+F Repair protein KO #

  DNA Repair and Recombination Proteins - Desulfuromonas sp. DDH964

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DBW_1655 methylated DNA--protein cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DBW_3025 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DBW_0516 endonuclease III family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DBW_0010 endonuclease III-like DNA glycosidase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D DBW_1471 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DBW_2708 NUDIX hydrolase, MutT family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DBW_0908 NUDIX hydrolase, type 15 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DBW_1730 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DBW_1655 methylated DNA--protein cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DBW_3025 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DBW_1206 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E DBW_1614 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E DBW_0516 endonuclease III family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DBW_1258 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DBW_2127 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E DBW_0010 endonuclease III-like DNA glycosidase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DBW_1149 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E DBW_3496 endodeoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E DBW_1023 nfi; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E DBW_2169 single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E DBW_2811 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E DBW_0995 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E DBW_3644 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E DBW_0399 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E DBW_0956 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E DBW_3213 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DBW_0618 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DBW_0995 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E DBW_2811 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F DBW_1110 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F DBW_1111 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F DBW_1144 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F DBW_2307 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F DBW_3648 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DBW_1694 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E DBW_3260 DNA mismatch repair ATPase MutS-2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E DBW_2280 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E DBW_2429 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E DBW_2427 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E DBW_1530 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E DBW_0002 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DBW_1713 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E DBW_1652 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E DBW_1630 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E DBW_2993 3'-to-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DBW_0541 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E DBW_2811 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E DBW_3213 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DBW_0618 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DBW_0318 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein E DBW_0932 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DBW_0921 recombinase A K03553 recA; recombination protein RecA E DBW_2667 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DBW_2668 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DBW_2666 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E DBW_1085 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E DBW_0301 sbcC_1; Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E DBW_1268 sbcC_2; Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E DBW_0302 sbcD; Nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E DBW_1267 DNA repair exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E DBW_0921 recombinase A K03553 recA; recombination protein RecA E DBW_3375 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E DBW_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E DBW_1936 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DBW_3088 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DBW_2169 single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DBW_1017 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E DBW_0543 recombination protein RecR K06187 recR; recombination protein RecR E DBW_2653 DNA repair ATPase RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E DBW_0627 exonuclease K03554 rdgC; recombination associated protein RdgC E DBW_2667 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DBW_2668 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DBW_2666 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E DBW_1905 ATP-dependent DNA helicase PcrA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E DBW_1904 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E DBW_1335 CRISPR-associated exonuclease Cas4 and endodeoxyribonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E DBW_0301 sbcC_1; Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E DBW_1268 sbcC_2; Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E DBW_0302 sbcD; Nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E DBW_1267 DNA repair exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 E DBW_2237 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DBW_0005 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DBW_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F DBW_3200 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F DBW_2452 histone-like protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DBW_2169 single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DBW_1017 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F DBW_0543 recombination protein RecR K06187 recR; recombination protein RecR F DBW_2811 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F DBW_1846 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F DBW_1922 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta F DBW_2159 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F DBW_3000 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F DBW_3644 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F DBW_0399 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DBW_3386 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D DBW_3663 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D DBW_0921 recombinase A K03553 recA; recombination protein RecA D DBW_3387 LexA family transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D DBW_2653 DNA repair ATPase RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DBW_3385 DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D DBW_0318 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D DBW_0932 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D DBW_0919 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D DBW_3585 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D DBW_1471 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DBW_2708 NUDIX hydrolase, MutT family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DBW_0908 NUDIX hydrolase, type 15 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DBW_1730 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DBW_2074 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D DBW_1725 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024