+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Megalodesulfovibrio gigas

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D DGI_0117 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C DGI_0880 era; putative GTP-binding protein Era K03595 era; GTPase C DGI_0366 putative GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C DGI_1517 putative prokaryotic dksA/traR C4-type zinc finger family protein K06204 dksA; RNA polymerase-binding transcription factor C DGI_3001 putative TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor C DGI_2855 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C DGI_1563 putative transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA C DGI_1904 putative NusB antitermination factor K03625 nusB; transcription antitermination protein NusB C DGI_1769 putative NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D DGI_2515 putative dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D DGI_0853 putative Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D DGI_0042 putative N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D DGI_2297 putative RNA methyltransferase family protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D DGI_2315 putative Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D DGI_0353 putative Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D DGI_3115 putative Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D DGI_0701 putative hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D DGI_0891 putative TrmH family RNA methyltransferase, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D DGI_2701 putative ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D DGI_2310 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D DGI_0584 putative ribosomal RNA methyltransferase RrmJ/FtsJ K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D DGI_1510 putative 23S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D DGI_0701 putative hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D DGI_1523 putative RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D DGI_0048 putative rRNA pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D DGI_1032 putative pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D DGI_0839 putative pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D DGI_2898 putative dephospho-CoA kinase / ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C DGI_0333 putative ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C DGI_3121 putative 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C DGI_0666 putative MiaB-like tRNA modifying protein YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C DGI_1680 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C DGI_2729 putative ribosomal L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C DGI_0117 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C DGI_2879 putative ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] C DGI_1345 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases B GTPases C DGI_0880 era; putative GTP-binding protein Era K03595 era; GTPase C DGI_1740 putative GTP-binding protein EngA K03977 engA; GTPase C DGI_0366 putative GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C DGI_0511 putative GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C DGI_2309 putative SUA5/yciO/yrdC domain-containing protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C DGI_2687 putative (p)ppGpp synthetase I SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C DGI_1557 putative ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C DGI_1564 hypothetical protein K09748 rimP; ribosome maturation factor RimP C DGI_3491 putative iojap family protein K09710 ybeB; ribosome-associated protein C DGI_2719 hypothetical protein K07042 ybeY; probable rRNA maturation factor C DGI_2417 putative sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor C DGI_0231 putative GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C DGI_1920 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024