+E Ribosome biogenesis KO
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Ribosome Biogenesis - Megalodesulfovibrio gigas
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D DGI_0117 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C DGI_0880 era; putative GTP-binding protein Era K03595 era; GTPase
C DGI_0366 putative GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C DGI_1517 putative prokaryotic dksA/traR C4-type zinc finger family protein K06204 dksA; RNA polymerase-binding transcription factor
C DGI_3001 putative TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C DGI_2855 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C DGI_1563 putative transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C DGI_1904 putative NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
C DGI_1769 putative NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D DGI_2515 putative dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D DGI_0853 putative Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D DGI_0042 putative N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D DGI_2297 putative RNA methyltransferase family protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D DGI_2315 putative Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DGI_0353 putative Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D DGI_3115 putative Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D DGI_0701 putative hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D DGI_0891 putative TrmH family RNA methyltransferase, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D DGI_2701 putative ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D DGI_2310 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D DGI_0584 putative ribosomal RNA methyltransferase RrmJ/FtsJ K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D DGI_1510 putative 23S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D DGI_0701 putative hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D DGI_1523 putative RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D DGI_0048 putative rRNA pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D DGI_1032 putative pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D DGI_0839 putative pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D DGI_2898 putative dephospho-CoA kinase / ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C DGI_0333 putative ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C DGI_3121 putative 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C DGI_0666 putative MiaB-like tRNA modifying protein YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C DGI_1680 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C DGI_2729 putative ribosomal L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C DGI_0117 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C DGI_2879 putative ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
C DGI_1345 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C DGI_0880 era; putative GTP-binding protein Era K03595 era; GTPase
C DGI_1740 putative GTP-binding protein EngA K03977 engA; GTPase
C DGI_0366 putative GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C DGI_0511 putative GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C DGI_2309 putative SUA5/yciO/yrdC domain-containing protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C DGI_2687 putative (p)ppGpp synthetase I SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C DGI_1557 putative ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C DGI_1564 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C DGI_3491 putative iojap family protein K09710 ybeB; ribosome-associated protein
C DGI_2719 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C DGI_2417 putative sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
C DGI_0231 putative GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C DGI_1920 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024