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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Drosophila hydei</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        111605338 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        111593245 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        111600403 DNA-directed RNA polymerase II subunit RPB3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        111595203 DNA-directed RNA polymerase II subunit RPB11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        111599766 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        111602617 DNA-directed RNA polymerase II subunit RPB9	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        111603640 uncharacterized protein LOC111603640	K21987 POLR2M; DNA-directed RNA polymerase II subunit GRINL1A 
D      Pol I, II, III common subunits
E        111593196 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111604932 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        111600961 DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        111602582 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        111593682 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        111595925 transcription initiation factor IIA subunit 1 isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        111602822 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        111592594 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        111596080 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111596085 uncharacterized protein LOC111596085	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111594933 TBP-related factor	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111598403 uncharacterized protein LOC111598403	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111601895 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111597947 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111600833 transcription initiation factor TFIID subunit 1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        111598747 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        111597773 transcription initiation factor TFIID subunit 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        111601665 transcription initiation factor TFIID subunit 4 isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        111597485 uncharacterized protein LOC111597485	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        111597055 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        111596604 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        111605085 transcription initiation factor TFIID subunit 6 isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        111603555 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        111600673 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        111598852 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        111604030 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        111601713 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        111593329 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        111596067 transcription initiation factor TFIID subunit 10b	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        111603542 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        111594651 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        111592008 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        111600373 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        111592798 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        111595275 general transcription factor IIE subunit 2	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        111599576 general transcription factor IIF subunit 1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        111594009 general transcription factor IIF subunit 2-like isoform X1	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        111598565 general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        111600644 general transcription factor IIH subunit 1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        111592865 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        111599095 general transcription factor IIH subunit 3	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        111600271 general transcription factor IIH subunit 3-like	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        111594369 general transcription factor IIH subunit 4	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        111599771 general transcription and DNA repair factor IIH helicase subunit XPB	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        115483461 general transcription and DNA repair factor IIH helicase subunit XPB	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        111597091 general transcription and DNA repair factor IIH helicase subunit XPD isoform X1	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        111603752 general transcription factor IIH subunit 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        111597262 cyclin-dependent kinase 7	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        111604092 CDK-activating kinase assembly factor MAT1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        111597445 cyclin-H	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        111602723 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        111596985 mediator of RNA polymerase II transcription subunit 8	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        111592338 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        111601374 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        111593406 mediator of RNA polymerase II transcription subunit 18 isoform X1	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        111603317 mediator of RNA polymerase II transcription subunit 19	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        111602872 mediator of RNA polymerase II transcription subunit 20	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        111601870 mediator of RNA polymerase II transcription subunit 22	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        111604912 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        111605404 mediator of RNA polymerase II transcription subunit 29	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        111598759 mediator of RNA polymerase II transcription subunit 30	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        111600975 mediator of RNA polymerase II transcription subunit 1-like isoform X1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        111600992 mediator of RNA polymerase II transcription subunit 1 isoform X1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        111605652 mediator of RNA polymerase II transcription subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        111601347 mediator of RNA polymerase II transcription subunit 7	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        111605215 protein NCBP2AS2 homolog	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        111605207 mediator of RNA polymerase II transcription subunit 9	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        111600466 mediator of RNA polymerase II transcription subunit 10	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        111598597 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        111600861 mediator of RNA polymerase II transcription subunit 31 isoform X1	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        111601068 mediator of RNA polymerase II transcription subunit 14 isoform X1	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        111599075 mediator of RNA polymerase II transcription subunit 15 isoform X1	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        111593205 mediator of RNA polymerase II transcription subunit 16	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        111597540 cyclin-dependent kinase 8	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        111605449 cyclin-C	K15161 CCNC; cyclin-C 
E        115483097 LOW QUALITY PROTEIN: cyclin-C-like	K15161 CCNC; cyclin-C 
E        111604419 mediator of RNA polymerase II transcription subunit 12	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        111596021 mediator of RNA polymerase II transcription subunit 13 isoform X1	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        111595629 mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        111592824 mediator of RNA polymerase II transcription subunit 24	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        111597171 mediator of RNA polymerase II transcription subunit 25	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        111594136 mediator of RNA polymerase II transcription subunit 26	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        111594634 mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        111597326 histone acetyltransferase KAT2B-like	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        111595060 histone acetyltransferase KAT2A	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        111599996 transcription-associated protein 1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        111601780 transcription initiation protein SPT3 homolog	K11313 SUPT3H; transcription initiation protein SPT3 
E        111595410 transcriptional adapter 2A isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        111605433 transcriptional adapter 2B isoform X1	K15127 TADA2B; transcriptional adapter 2-beta 
E        111602399 transcriptional adapter 3-B	K11315 TADA3; transcriptional adapter 3 
E        111603764 transcriptional adapter 1	K11317 TADA1; transcriptional adapter 1 
E        111598747 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        111601665 transcription initiation factor TFIID subunit 4 isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        111597485 uncharacterized protein LOC111597485	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        111597055 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        111596604 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        111605085 transcription initiation factor TFIID subunit 6 isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        111603555 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        111600673 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        111598852 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        111593329 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        111596067 transcription initiation factor TFIID subunit 10b	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        111603542 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        111592008 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        111593525 SAGA-associated factor 11 homolog	K11363 SGF11; SAGA-associated factor 11 
E        111593728 SAGA-associated factor 29	K11364 SGF29; SAGA-associated factor 29 
E        115483464 SAGA-associated factor 29	K11364 SGF29; SAGA-associated factor 29 
E        111596718 uncharacterized protein LOC111596718	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        111603903 chromodomain-helicase-DNA-binding protein 1 isoform X1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        111602428 enhancer of yellow 2 transcription factor	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        111595714 enhancer of yellow 2b transcription factor-like	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        111603602 enhancer of yellow 2b transcription factor	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        111603312 ubiquitin carboxyl-terminal hydrolase nonstop	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        111598684 splicing factor 3B subunit 3 isoform X1	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        111595342 LOW QUALITY PROTEIN: ATP-dependent helicase brm	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        111603608 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        111601428 SWI/SNF complex subunit SMARCC1 isoform X2	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        111602858 brahma-associated protein of 60 kDa	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        111603107 basic proline-rich protein	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        111597353 actin-5C	K05692 ACTB_G1; actin beta/gamma 1 
E        111603208 actin-42A	K05692 ACTB_G1; actin beta/gamma 1 
E        111600576 actin-like protein 6B	K11652 ACTL6B; actin-like protein 6B 
E        111598607 trithorax group protein osa isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        111592153 AT-rich interactive domain-containing protein 2	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        111601781 protein polybromo-1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        111603608 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        111601944 RNA polymerase II transcriptional coactivator	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
C    Other transcription-related factors
D      Transcription elongation factors
E        111599007 transcription elongation factor S-II	K03145 TFIIS; transcription elongation factor S-II 
E        115483323 transcription elongation factor S-II	K03145 TFIIS; transcription elongation factor S-II 
E        111593555 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        111600151 transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
E        111598101 transcription elongation factor SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        111604968 transcription termination factor 2	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        111603432 transcription termination factor 2-like	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        111597926 uncharacterized protein LOC111597926 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        111597997 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        111596746 cleavage and polyadenylation specificity factor 73	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        111599159 cleavage and polyadenylation specificity factor subunit 4	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        111601270 serine/threonine-protein phosphatase alpha-3 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111601414 serine/threonine-protein phosphatase alpha-2 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111604510 serine/threonine-protein phosphatase alpha-2 isoform-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111604024 serine/threonine-protein phosphatase alpha-3 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111601219 serine/threonine-protein phosphatase alpha-3 isoform-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111601220 serine/threonine-protein phosphatase alpha-2 isoform-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111593360 serine/threonine-protein phosphatase alpha-1 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111596996 serine/threonine-protein phosphatase alpha-2 isoform-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111600652 serine/threonine-protein phosphatase PP-Y	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111602062 serine/threonine-protein phosphatase beta isoform isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111603031 symplekin	K06100 SYMPK; symplekin 
E        111593468 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        111600864 5'-3' exoribonuclease 2 homolog	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        111601261 protein cutoff-like	K14845 RAI1; RAT1-interacting protein 
E        111603497 protein cutoff	K14845 RAI1; RAT1-interacting protein 
E        111598671 regulation of nuclear pre-mRNA domain-containing protein 1B	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        111595576 protein no-on-transient A-like	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        111594076 protein no-on-transient A	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        111597089 SR-related and CTD-associated factor 4 isoform X1	K13191 RBM16; RNA-binding protein 16 
E        111601693 uncharacterized protein LOC111601693	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        111601811 putative peptidyl-prolyl cis-trans isomerase dodo	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        111596314 uncharacterized protein LOC111596314 isoform X1	K15174 PAF1; RNA polymerase II-associated factor 1 
E        111604877 RNA polymerase II-associated factor 1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        111595470 bromodomain-containing protein 4	K15175 CDC73; parafibromin 
E        111604838 parafibromin	K15175 CDC73; parafibromin 
E        111594398 RNA polymerase-associated protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        111595385 RNA polymerase-associated protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        111604820 another transcription unit protein	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        111601448 another transcription unit protein	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        111601621 RNA polymerase-associated protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        111595255 RNA polymerase-associated protein Rtf1	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        111603904 RNA polymerase-associated protein Rtf1-like	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        111602670 negative elongation factor A	K15179 WHSC2; negative elongation factor A 
E        111594508 negative elongation factor B	K15180 COBRA1; negative elongation factor B 
E        111593990 negative elongation factor B	K15180 COBRA1; negative elongation factor B 
E        111594072 negative elongation factor D	K15181 TH1L; negative elongation factor C/D 
E        111605175 negative elongation factor E	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        111604426 RNA polymerase II elongation factor Ell	K15183 ELL; RNA polymerase II elongation factor ELL 
E        111596995 ell-associated factor Eaf	K15186 EAF; ELL-associated factor 
E        111602996 protein AF-9	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        111601054 cyclin-T	K15188 CCNT; cyclin T 
E        111593920 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        111604426 RNA polymerase II elongation factor Ell	K15183 ELL; RNA polymerase II elongation factor ELL 
D      Brd4/P-TEFb complex
E        111601054 cyclin-T	K15188 CCNT; cyclin T 
E        111593920 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        111595685 protein HEXIM	K15189 HEXIM1_2; protein HEXIM1/2 
E        111601302 probable RNA methyltransferase CG1239	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        111604361 probable RNA methyltransferase bin3	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        111594049 la-related protein 7	K15191 LARP7; La-related protein 7 
E        111601054 cyclin-T	K15188 CCNT; cyclin T 
E        111593920 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
D      Others
E        111601525 TATA-binding protein-associated factor 172	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        111598942 protein Dr1	K21751 DR1; down-regulator of transcription 1 
E        111599705 dr1-associated corepressor homolog	K21752 DRAP1; Dr1-associated corepressor 
E        111596721 protein SPT2 homolog isoform X1	K15193 SPTY2D1; protein SPT2 
E        111593171 AF4/FMR2 family member 4	K15194 AFF2; AF4/FMR2 family member 2 
E        111604081 RNA polymerase II subunit A C-terminal domain phosphatase	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        111598091 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        111595369 IWS1-like protein	K17498 SPN1; transcription factor SPN1 
E        111595518 uncharacterized protein LOC111595518	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        111598728 RNA polymerase II-associated protein 1	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        111603606 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        111600619 LOW QUALITY PROTEIN: RNA polymerase II-associated protein 3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        115483359 RNA polymerase II-associated protein 3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        111592071 cyclin-K	K23326 CCNK; cyclin K 
E        111595108 GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        111603581 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        111601900 GPN-loop GTPase 1	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        111598170 DNA-directed RNA polymerase III subunit RPC1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        111595452 DNA-directed RNA polymerase III subunit RPC2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        111601871 DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        111600217 probable DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        111605517 DNA-directed RNA polymerase III subunit RPC3	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        111599271 DNA-directed RNA polymerase III subunit RPC4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        111597502 DNA-directed RNA polymerase III subunit RPC5	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        111598358 probable DNA-directed RNA polymerase III subunit RPC6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        111594879 DNA-directed RNA polymerase III subunit RPC7	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        111592771 DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        111598301 DNA-directed RNA polymerase III subunit RPC9	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        111602149 DNA-directed RNA polymerase III subunit RPC10	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        111593196 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111604932 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        111600961 DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        111602582 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        111593682 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        111593041 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        111596080 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111596085 uncharacterized protein LOC111596085	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111594933 TBP-related factor	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111598403 uncharacterized protein LOC111598403	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111601895 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111597947 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111601537 transcription factor IIIB 90 kDa subunit	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        111592552 transcription factor TFIIIB component B'' homolog	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        111594710 general transcription factor 3C polypeptide 1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        111597228 uncharacterized protein LOC111597228 isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        111599755 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        111602922 uncharacterized protein LOC111602922 isoform X1	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        111600349 general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        111600795 uncharacterized protein LOC111600795	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        111600349 general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        111599755 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        111602948 uncharacterized protein LOC111602948	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        111600792 snRNA-activating protein complex subunit 3	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
E        111595862 protein nubbin	K09364 POU2F; POU domain transcription factor, class 2 
E        111595808 POU domain protein 2 isoform X2	K09364 POU2F; POU domain transcription factor, class 2 
D      Others
E        111594639 repressor of RNA polymerase III transcription MAF1 homolog	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        111602583 DNA-directed RNA polymerase I subunit RPA1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        111599179 DNA-directed RNA polymerase I subunit RPA2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        111601871 DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        111600217 probable DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        111605445 uncharacterized protein LOC111605445	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        115483347 uncharacterized protein LOC115483347	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        111605022 DNA-directed RNA polymerase I subunit RPA43	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        111598222 DNA-directed RNA polymerase I subunit RPA12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        111593196 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111604932 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        111600961 DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        111602582 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        111593682 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        111596080 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111596085 uncharacterized protein LOC111596085	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111594933 TBP-related factor	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111598403 uncharacterized protein LOC111598403	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111601895 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111597947 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        111603543 TATA box-binding protein-associated factor RNA polymerase I subunit B	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        111592054 RNA polymerase I-specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        111604783 upstream activation factor subunit spp27	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        111593555 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        111600151 transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        111592724 chromatin-remodeling complex ATPase chain Iswi	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        111592733 chromatin-remodeling complex ATPase chain Iswi-like	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
E        111594920 nucleolar protein dao-5 isoform X1	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        111592594 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        111592798 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
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#Last updated: April 9, 2024