+F Repair protein KO #

  DNA Repair and Recombination Proteins - Dialister hominis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Dia5BBH33_15100 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Dia5BBH33_12880 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Dia5BBH33_03470 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Dia5BBH33_12070 DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E Dia5BBH33_11250 ntH; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Dia5BBH33_03460 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Dia5BBH33_18930 mutT; DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Dia5BBH33_07410 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Dia5BBH33_15100 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Dia5BBH33_16410 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Dia5BBH33_21490 DNA-3-methyladenine glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Dia5BBH33_12880 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Dia5BBH33_03470 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Dia5BBH33_11250 ntH; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Dia5BBH33_05010 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Dia5BBH33_15280 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E Dia5BBH33_08040 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Dia5BBH33_10970 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E Dia5BBH33_05270 uvrA_1; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E Dia5BBH33_07320 uvrA_2; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E Dia5BBH33_07310 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E Dia5BBH33_07330 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E Dia5BBH33_00900 pcrA_1; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Dia5BBH33_10980 pcrA_2; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Dia5BBH33_10970 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Dia5BBH33_04270 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Dia5BBH33_04280 hypothetical protein K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Dia5BBH33_14710 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Dia5BBH33_09230 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Dia5BBH33_11080 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Dia5BBH33_11660 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E Dia5BBH33_09600 mutSB; endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E Dia5BBH33_11650 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E Dia5BBH33_06030 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Dia5BBH33_05900 polC_1; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E Dia5BBH33_19880 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Dia5BBH33_05880 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Dia5BBH33_07220 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Dia5BBH33_09050 polC_2; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Dia5BBH33_15090 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Dia5BBH33_20670 polC_3; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Dia5BBH33_06420 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Dia5BBH33_10970 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Dia5BBH33_00900 pcrA_1; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Dia5BBH33_10980 pcrA_2; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Dia5BBH33_05580 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E Dia5BBH33_08900 ssb3; single-stranded DNA-binding protein 3 K03111 ssb; single-strand DNA-binding protein E Dia5BBH33_16580 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Dia5BBH33_10540 recD2; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Dia5BBH33_08170 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E Dia5BBH33_06090 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Dia5BBH33_06100 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Dia5BBH33_06080 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Dia5BBH33_09200 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Dia5BBH33_15260 sbcC; nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E Dia5BBH33_15270 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Dia5BBH33_08170 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E Dia5BBH33_08230 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Dia5BBH33_19860 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E Dia5BBH33_13810 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Dia5BBH33_08040 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Dia5BBH33_02510 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E Dia5BBH33_06400 recR; recombination protein RecR K06187 recR; recombination protein RecR E Dia5BBH33_07990 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Dia5BBH33_06090 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Dia5BBH33_06100 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Dia5BBH33_06080 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E Dia5BBH33_14540 addA; ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E Dia5BBH33_14530 addB; ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E Dia5BBH33_02260 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E Dia5BBH33_15260 sbcC; nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E Dia5BBH33_15270 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Dia5BBH33_04030 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Dia5BBH33_15900 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Dia5BBH33_07190 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Dia5BBH33_07290 hupA; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Dia5BBH33_08040 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Dia5BBH33_02510 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F Dia5BBH33_06400 recR; recombination protein RecR K06187 recR; recombination protein RecR F Dia5BBH33_10970 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Dia5BBH33_00440 DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Dia5BBH33_05270 uvrA_1; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F Dia5BBH33_07320 uvrA_2; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F Dia5BBH33_07310 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Dia5BBH33_00140 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Dia5BBH33_11910 DNA methylase K03502 umuC; DNA polymerase V C Other SOS response factors D Dia5BBH33_08170 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D Dia5BBH33_03560 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D Dia5BBH33_08490 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D Dia5BBH33_07990 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Dia5BBH33_05580 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Dia5BBH33_08900 ssb3; single-stranded DNA-binding protein 3 K03111 ssb; single-strand DNA-binding protein D Dia5BBH33_08180 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D Dia5BBH33_03460 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Dia5BBH33_18930 mutT; DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Dia5BBH33_07410 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Dia5BBH33_04050 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D Dia5BBH33_02980 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024