+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Dietzia sp. JS16-p6b

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D CT688_09240 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D CT688_05285 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C CT688_05800 GTPase Era K03595 era; GTPase C CT688_05575 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C CT688_08970 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C CT688_08425 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C CT688_12245 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D CT688_11180 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D CT688_08345 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D CT688_09260 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D CT688_05780 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D CT688_17185 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CT688_06425 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D CT688_11210 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D CT688_07325 16S/23S rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D CT688_09860 methyltransferase type 11 K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D CT688_02975 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D CT688_09050 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D CT688_07325 16S/23S rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D CT688_14735 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CT688_07380 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D CT688_06545 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CT688_16390 23S ribosomal RNA methyltransferase Erm K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184] B ribosomal protein modification factors C CT688_04115 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C CT688_11270 RimJ/RimL family protein N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C CT688_09160 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM B rRNA processing factors C CT688_09240 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C CT688_05560 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12] C CT688_08475 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C CT688_09740 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C CT688_05800 GTPase Era K03595 era; GTPase C CT688_04640 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C CT688_07390 ribosome biogenesis GTPase Der K03977 engA; GTPase C CT688_05575 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C CT688_08780 hflX; GTPase HflX K03665 hflX; GTPase B Other maturation factors C CT688_09655 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C CT688_08515 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C CT688_08955 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C CT688_08975 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP C CT688_01210 RNA-binding protein K14761 rlbA; ribosome-associated protein C CT688_05685 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein C CT688_05790 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor C CT688_10135 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C CT688_09245 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024