+E Ribosome biogenesis KO
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Ribosome Biogenesis - Dokdonella koreensis
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D I596_496 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D I596_3532 Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C I596_497 GTP-binding protein Era K03595 era; GTPase
C I596_2362 Small GTP-binding protein domain K03595 era; GTPase
C I596_2325 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C I596_1333 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C I596_1357 Transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C I596_636 Transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB
C I596_2640 Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D I596_3408 Pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D I596_1597 Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D I596_465 Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D I596_3409 Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D I596_1800 16S rRNA (guanine(966)-N(2))-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D I596_2742 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D I596_3425 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D I596_546 rRNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D I596_645 rRNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D I596_1734 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D I596_2092 Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D I596_2009 Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D I596_55 Oxidoreductase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D I596_1590 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D I596_2584 Protein involved in catabolism of external DNA K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D I596_1425 23S rRNA (guanine-N-2-) -methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D I596_728 Ribosomal RNA large subunit methyltransferase M K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D I596_1381 Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D I596_502 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D I596_3211 Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D I596_1837 Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D I596_3058 Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D I596_2593 Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D I596_1173 Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D I596_3306 Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D I596_1090 tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C I596_2938 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C I596_686 Acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C I596_938 Ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C I596_1615 Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C I596_1547 Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C I596_403 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C I596_1670 50S ribosomal protein L3/Protein-N(5)-glutamine methyltransferase PrmB K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C I596_2347 Hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C I596_496 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C I596_2594 Ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
C I596_1716 Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C I596_800 Putative Holliday junction resolvase YggF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C I596_722 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C I596_1374 DNA/RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C I596_497 GTP-binding protein Era K03595 era; GTPase
C I596_2362 Small GTP-binding protein domain K03595 era; GTPase
C I596_3794 Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C I596_1386 GTP-binding protein EngA K03977 engA; GTPase
C I596_2325 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
C I596_1974 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C I596_458 tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C I596_2674 RelA/SpoT family (P)ppGpp synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C I596_1360 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C I596_1356 Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C I596_2010 Iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein
C I596_3286 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly K07042 ybeY; probable rRNA maturation factor
C I596_2093 Putative RNA-binding protein containing KH domain K07574 yhbY; RNA-binding protein
C I596_1719 DUF615 domain containing protein K09889 yjgA; ribosome-associated protein
C I596_1684 Ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C I596_2650 GTP-binding and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase
C I596_2285 Putative metal-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024