+F Repair protein KO #

  DNA Repair and Recombination Proteins - Delftia lacustris

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D I6G47_06865 MGMT family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D I6G47_16775 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E I6G47_20795 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E I6G47_28600 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E I6G47_10055 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E I6G47_26575 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D I6G47_26820 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D I6G47_28260 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D I6G47_30525 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D I6G47_06865 MGMT family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D I6G47_13735 ada; bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D I6G47_16775 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D I6G47_05240 alkB; DNA oxidative demethylase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E I6G47_20795 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E I6G47_28905 DNA-deoxyinosine glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E I6G47_19755 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E I6G47_31845 TIGR03915 family putative DNA repair protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E I6G47_11670 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E I6G47_13730 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E I6G47_28600 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E I6G47_16820 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E I6G47_28590 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E I6G47_10055 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E I6G47_24015 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E I6G47_31050 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E I6G47_28860 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E I6G47_06120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E I6G47_29285 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E I6G47_20535 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E I6G47_23210 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E I6G47_25835 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E I6G47_04125 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E I6G47_09790 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C E I6G47_05305 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E I6G47_29255 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E I6G47_29285 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E I6G47_06120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F I6G47_24565 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F I6G47_24570 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F I6G47_19380 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F I6G47_14420 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F I6G47_09935 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E I6G47_12830 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E I6G47_30370 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E I6G47_06465 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E I6G47_06200 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E I6G47_13000 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E I6G47_06485 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E I6G47_21750 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E I6G47_06295 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E I6G47_21455 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E I6G47_06725 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E I6G47_04165 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E I6G47_22180 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E I6G47_25800 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E I6G47_31565 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E I6G47_06120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E I6G47_05305 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E I6G47_29255 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E I6G47_03460 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E I6G47_20545 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E I6G47_32440 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E I6G47_09515 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E I6G47_24630 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E I6G47_24625 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E I6G47_24635 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E I6G47_20255 recA; recombinase RecA K03553 recA; recombination protein RecA E I6G47_18410 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E I6G47_18405 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E I6G47_17255 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E I6G47_24850 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E I6G47_29880 priB; primosomal replication protein N K02686 priB; primosomal replication protein N E I6G47_06465 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E I6G47_20155 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E I6G47_20150 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E I6G47_20255 recA; recombinase RecA K03553 recA; recombination protein RecA E I6G47_23850 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E I6G47_19565 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E I6G47_21880 putative DNA binding domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E I6G47_28860 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E I6G47_29725 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E I6G47_31575 recR; recombination protein RecR K06187 recR; recombination protein RecR E I6G47_28630 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E I6G47_21830 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E I6G47_00745 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E I6G47_18410 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E I6G47_18405 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E I6G47_17255 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E I6G47_12630 cas1c; type I-C CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E I6G47_18485 cas1f; type I-F CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E I6G47_20155 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E I6G47_20150 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E I6G47_06390 DUF853 family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase E I6G47_08360 DEAD/DEAH box helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E I6G47_23285 Ku protein K10979 ku; DNA end-binding protein Ku E I6G47_02580 Ku protein K10979 ku; DNA end-binding protein Ku E I6G47_23295 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E I6G47_02585 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F I6G47_00645 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F I6G47_21755 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F I6G47_02565 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F I6G47_09780 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F I6G47_17385 MBL fold metallo-hydrolase K07455 recT; recombination protein RecT F I6G47_32450 recombinase RecT K07455 recT; recombination protein RecT F I6G47_28860 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F I6G47_29725 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F I6G47_31575 recR; recombination protein RecR K06187 recR; recombination protein RecR F I6G47_06120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F I6G47_16835 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F I6G47_01390 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F I6G47_00615 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F I6G47_06465 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F I6G47_22410 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F I6G47_20535 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F I6G47_23210 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F I6G47_25835 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F I6G47_04125 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B F I6G47_04500 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_05540 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_06615 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_09725 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_10920 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_13755 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_14740 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_15725 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_23175 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_32675 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_32980 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_33480 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_00730 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_00955 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_01075 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_01110 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F I6G47_02040 H-NS histone family protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D I6G47_29460 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D I6G47_09485 Y-family DNA polymerase K03502 umuC; DNA polymerase V D I6G47_09480 umuD; translesion error-prone DNA polymerase V autoproteolytic subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D I6G47_20255 recA; recombinase RecA K03553 recA; recombination protein RecA D I6G47_06240 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D I6G47_28630 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D I6G47_33530 imuA; translesion DNA synthesis-associated protein ImuA K14160 imuA; protein ImuA D I6G47_03050 imuA; translesion DNA synthesis-associated protein ImuA K14160 imuA; protein ImuA D I6G47_33535 DNA polymerase Y family protein K14161 imuB; protein ImuB D I6G47_03055 DNA polymerase Y family protein K14161 imuB; protein ImuB D I6G47_03060 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D I6G47_03460 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D I6G47_20545 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D I6G47_32440 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D I6G47_20260 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D I6G47_24795 UvrD-helicase domain-containing protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D I6G47_04645 UvrD-helicase domain-containing protein K03658 helD; DNA helicase IV [EC:5.6.2.4] D I6G47_06495 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D I6G47_21815 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D I6G47_08145 ligase-associated DNA damage response DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D I6G47_26820 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D I6G47_28260 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D I6G47_30525 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D I6G47_17145 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D I6G47_18990 ribonucleoside reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D I6G47_32425 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D I6G47_17150 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024