+D GENES KO
#
KEGG Orthology (KO) - Dehalococcoides mccartyi DCMB5
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:dmd00010]
D dcmb_48 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D dcmb_518 glucose-6-phosphate/mannose-6-phosphate isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D dcmb_1205 putative hexose kinase, 1-phosphofructokinase family K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D dcmb_1087 fbp; fructose-1,6-bisphosphatase, type V, archaeal K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D dcmb_710 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D dcmb_598 gap; NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D dcmb_712 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D dcmb_711 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D dcmb_1521 cofactor-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D dcmb_601 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D dcmb_562 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D dcmb_693 porA; pyruvate ferredoxin oxidoreductase, subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D dcmb_694 porB; pyruvate ferredoxin oxidoreductase, subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D dcmb_691 porC; pyruvate ferredoxin oxidoreductase, subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D dcmb_692 porD; pyruvate ferredoxin oxidoreductase, subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D dcmb_1072 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00020 Citrate cycle (TCA cycle) [PATH:dmd00020]
D dcmb_1500 re-citrate synthase K05942 E2.3.3.3; citrate (Re)-synthase [EC:2.3.3.3]
D dcmb_461 icd; isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D dcmb_464 fumarate hydratase class I, large subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D dcmb_465 fumarate hydratase class I, small subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D dcmb_462 mdh; L-lactate dehydrogenase-like malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D dcmb_144 pycA; pyruvate carboxyl transferase subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D dcmb_143 pycB; pyruvate carboxyl transferase subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D dcmb_693 porA; pyruvate ferredoxin oxidoreductase, subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D dcmb_694 porB; pyruvate ferredoxin oxidoreductase, subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D dcmb_691 porC; pyruvate ferredoxin oxidoreductase, subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D dcmb_692 porD; pyruvate ferredoxin oxidoreductase, subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00030 Pentose phosphate pathway [PATH:dmd00030]
D dcmb_518 glucose-6-phosphate/mannose-6-phosphate isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D dcmb_646 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D dcmb_648 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D dcmb_1267 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D dcmb_647 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D dcmb_679 ribokinase family protein K00852 rbsK; ribokinase [EC:2.7.1.15]
D dcmb_447 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D dcmb_1087 fbp; fructose-1,6-bisphosphatase, type V, archaeal K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D dcmb_1205 putative hexose kinase, 1-phosphofructokinase family K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:dmd00040]
D dcmb_704 short-chain dehydrogenase/reductase family (SDR) protein K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D dcmb_646 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D dcmb_147 zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D dcmb_1527 class II aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:dmd00051]
D dcmb_518 glucose-6-phosphate/mannose-6-phosphate isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D dcmb_1071 nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D dcmb_208 nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D dcmb_1527 class II aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D dcmb_1222 mannosyl-3-phosphoglycerate synthase/mannosyl-3-phosphoglycerate phosphatase K05947 E2.4.1.217; mannosyl-3-phosphoglycerate synthase [EC:2.4.1.217]
D dcmb_1205 putative hexose kinase, 1-phosphofructokinase family K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D dcmb_147 zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D dcmb_1087 fbp; fructose-1,6-bisphosphatase, type V, archaeal K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D dcmb_710 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D dcmb_647 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:dmd00052]
D dcmb_207 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D dcmb_48 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D dcmb_1205 putative hexose kinase, 1-phosphofructokinase family K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D dcmb_1204 lacD; tagatose 1,6-diphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism [PATH:dmd00500]
D dcmb_48 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D dcmb_518 glucose-6-phosphate/mannose-6-phosphate isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:dmd00520]
D dcmb_540 glmS; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D dcmb_537 alpha-D-phosphohexomutase family protein K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D dcmb_538 glmU1; UDP-N-acetylglucosamine pyrophosphorylase/Glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D dcmb_48 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D dcmb_207 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D dcmb_518 glucose-6-phosphate/mannose-6-phosphate isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D dcmb_1071 nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D dcmb_208 nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
C 00620 Pyruvate metabolism [PATH:dmd00620]
D dcmb_1072 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D dcmb_693 porA; pyruvate ferredoxin oxidoreductase, subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D dcmb_694 porB; pyruvate ferredoxin oxidoreductase, subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D dcmb_691 porC; pyruvate ferredoxin oxidoreductase, subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D dcmb_692 porD; pyruvate ferredoxin oxidoreductase, subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D dcmb_964 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D dcmb_754 metallo-beta-lactamase domain-containing protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D dcmb_144 pycA; pyruvate carboxyl transferase subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D dcmb_143 pycB; pyruvate carboxyl transferase subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D dcmb_462 mdh; L-lactate dehydrogenase-like malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D dcmb_464 fumarate hydratase class I, large subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D dcmb_465 fumarate hydratase class I, small subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D dcmb_562 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D dcmb_792 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D dcmb_797 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:dmd00630]
D dcmb_1072 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D dcmb_462 mdh; L-lactate dehydrogenase-like malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D dcmb_1008 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_1392 putative glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_448 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D dcmb_191 formate dehydrogenase-like protein, catalytic subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D dcmb_137 hupX; [Ni/Fe] hydrogenase, group 1, additional subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D dcmb_645 putative cyclase K07130 kynB; arylformamidase [EC:3.5.1.9]
D dcmb_1100 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:dmd00640]
D dcmb_1072 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D dcmb_693 porA; pyruvate ferredoxin oxidoreductase, subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D dcmb_694 porB; pyruvate ferredoxin oxidoreductase, subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D dcmb_691 porC; pyruvate ferredoxin oxidoreductase, subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D dcmb_692 porD; pyruvate ferredoxin oxidoreductase, subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D dcmb_1463 mgsA2; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D dcmb_160 mgsA1; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
C 00650 Butanoate metabolism [PATH:dmd00650]
D dcmb_693 porA; pyruvate ferredoxin oxidoreductase, subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D dcmb_694 porB; pyruvate ferredoxin oxidoreductase, subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D dcmb_691 porC; pyruvate ferredoxin oxidoreductase, subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D dcmb_692 porD; pyruvate ferredoxin oxidoreductase, subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D dcmb_800 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D dcmb_799 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:dmd00660]
D dcmb_800 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D dcmb_799 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D dcmb_459 leuC1; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D dcmb_795 leuC2; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D dcmb_460 leuD1; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D dcmb_794 leuD2; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D dcmb_793 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:dmd00562]
D dcmb_914 ino1; myo-Inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D dcmb_710 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:dmd00190]
D dcmb_857 nuoA; NADH ubiquinone oxidoreductase chain A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D dcmb_858 nuoB; NADH ubiquinone oxidoreductase chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D dcmb_859 nuoC; NADH ubiquinone oxidoreductase chain C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D dcmb_860 nuoD; NADH ubiquinone oxidoreductase chain D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D dcmb_167 hymA; [FeFe] hydrogenase small subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D dcmb_457 HymA-like iron-sulfur cluster protein K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D dcmb_695 HymA-like protein K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D dcmb_830 energy converting NiFe hydrogenase electron-transferring subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D dcmb_168 hymB; [FeFe] hydrogenase NAD-binding subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D dcmb_696 HymB-like protein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D dcmb_831 energy converting NiFe hydrogenase NADH-binding subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D dcmb_169 hymC; [FeFe] hydrogenase catalytic subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D dcmb_861 nuoH; NADH ubiquinone oxidoreductase chain H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D dcmb_863 nuoJ; NADH ubiquinone oxidoreductase chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D dcmb_865 nuoL; NADH ubiquinone oxidoreductase chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D dcmb_866 nuoM; NADH ubiquinone oxidoreductase chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D dcmb_867 nuoN; NADH ubiquinone oxidoreductase chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D dcmb_864 nuoK; NADH ubiquinone oxidoreductase chain K K05576 ndhE; NAD(P)H-quinone oxidoreductase subunit 4L [EC:7.1.1.2]
D dcmb_862 nuoI; NADH ubiquinone oxidoreductase chain I K05580 ndhI; NAD(P)H-quinone oxidoreductase subunit I [EC:7.1.1.2]
D dcmb_697 iron-sulfur cluster containing dehydrogenase K05588 hoxU; bidirectional [NiFe] hydrogenase diaphorase subunit [EC:7.1.1.2]
D dcmb_832 putative energy converting NiFe hydrogenase electron transferring subunit K05588 hoxU; bidirectional [NiFe] hydrogenase diaphorase subunit [EC:7.1.1.2]
D dcmb_569 atpA; ATP synthase, subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D dcmb_571 atpD; ATP synthase, subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D dcmb_570 atpG; ATP synthase, subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D dcmb_568 atpH; ATP synthase, subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D dcmb_572 atpC; ATP synthase, subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D dcmb_565 atpB; ATP synthase, subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D dcmb_567 atpF; ATP synthase, subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D dcmb_566 atpE; ATP synthase, subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D dcmb_381 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:dmd00710]
D dcmb_712 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D dcmb_598 gap; NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D dcmb_648 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D dcmb_647 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D dcmb_710 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D dcmb_646 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D dcmb_1267 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D dcmb_462 mdh; L-lactate dehydrogenase-like malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:dmd00720]
D dcmb_693 porA; pyruvate ferredoxin oxidoreductase, subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D dcmb_694 porB; pyruvate ferredoxin oxidoreductase, subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D dcmb_691 porC; pyruvate ferredoxin oxidoreductase, subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D dcmb_692 porD; pyruvate ferredoxin oxidoreductase, subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D dcmb_562 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D dcmb_144 pycA; pyruvate carboxyl transferase subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D dcmb_143 pycB; pyruvate carboxyl transferase subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D dcmb_462 mdh; L-lactate dehydrogenase-like malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D dcmb_464 fumarate hydratase class I, large subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D dcmb_465 fumarate hydratase class I, small subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D dcmb_670 folD; methylenetetrahydrofolate dehydrogenase (NADP+)/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D dcmb_1018 putative oxidoreductase, electron transferring subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D dcmb_668 acsB; acetyl-CoA synthase, acetyl-CoA synthase subunit K14138 acsB; acetyl-CoA synthase [EC:2.3.1.169]
D dcmb_667 acsC; acetyl-CoA synthase, corrinoid iron-sulfur protein, large subunit K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245]
D dcmb_669 acsD; acetyl-CoA synthase, corrinoid iron-sulfur protein, small subunit K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245]
D dcmb_1072 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:dmd00680]
D dcmb_191 formate dehydrogenase-like protein, catalytic subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D dcmb_137 hupX; [Ni/Fe] hydrogenase, group 1, additional subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D dcmb_667 acsC; acetyl-CoA synthase, corrinoid iron-sulfur protein, large subunit K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245]
D dcmb_669 acsD; acetyl-CoA synthase, corrinoid iron-sulfur protein, small subunit K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245]
D dcmb_1018 putative oxidoreductase, electron transferring subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D dcmb_448 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D dcmb_601 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D dcmb_462 mdh; L-lactate dehydrogenase-like malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D dcmb_1087 fbp; fructose-1,6-bisphosphatase, type V, archaeal K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D dcmb_1205 putative hexose kinase, 1-phosphofructokinase family K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D dcmb_217 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain-containing protein K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1]
D dcmb_622 hydrogen maturation protease, FrhD type K00442 frhD; coenzyme F420 hydrogenase subunit delta
D dcmb_621 vhcA; NiFe-hydrogenase group 3, VhcA / MvhA large subunit K14126 mvhA; F420-non-reducing hydrogenase large subunit [EC:1.12.99.- 1.8.98.5]
D dcmb_620 vhcG; NiFe-hydrogenase group 3, VhcG / MvhG small subunit K14128 mvhG; F420-non-reducing hydrogenase small subunit [EC:1.12.99.- 1.8.98.5]
D dcmb_1072 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D dcmb_693 porA; pyruvate ferredoxin oxidoreductase, subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D dcmb_694 porB; pyruvate ferredoxin oxidoreductase, subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D dcmb_691 porC; pyruvate ferredoxin oxidoreductase, subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D dcmb_692 porD; pyruvate ferredoxin oxidoreductase, subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D dcmb_562 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D dcmb_711 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D dcmb_1521 cofactor-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D dcmb_607 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00910 Nitrogen metabolism [PATH:dmd00910]
D dcmb_1008 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_1392 putative glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_37 putative glutamate synthase, archeael type K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
C 00920 Sulfur metabolism [PATH:dmd00920]
D dcmb_1093 putative membrane protein K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2]
D dcmb_1476 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D dcmb_1020 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:dmd00061]
D dcmb_1138 acyl carrier protein K02078 acpP; acyl carrier protein
D dcmb_1135 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D dcmb_898 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D dcmb_1136 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D dcmb_1131 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D dcmb_880 faa; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D dcmb_970 lcfB; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D dcmb_880 faa; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D dcmb_970 lcfB; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:dmd00561]
D dcmb_552 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D dcmb_900 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D dcmb_8 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D dcmb_1497 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D dcmb_1255 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D dcmb_171 putative lysophospholipase K01054 MGLL; acylglycerol lipase [EC:3.1.1.23]
C 00564 Glycerophospholipid metabolism [PATH:dmd00564]
D dcmb_1256 gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D dcmb_900 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D dcmb_8 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D dcmb_1497 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D dcmb_1255 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D dcmb_386 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:dmd00230]
D dcmb_467 NUDIX hydrolase domain-containing protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D dcmb_447 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D dcmb_1273 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D dcmb_805 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D dcmb_680 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D dcmb_392 purQ; phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D dcmb_393 purS; Phosphoribosylformylglycinamidine synthase 2 K23270 purSL; phosphoribosylformylglycinamidine synthase subunit PurSL [EC:6.3.5.3]
D dcmb_1274 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D dcmb_806 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D dcmb_808 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D dcmb_807 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D dcmb_1276 purH; IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D dcmb_766 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D dcmb_761 hpt; hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D dcmb_717 phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D dcmb_398 IMP dehydrogenase family protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D dcmb_406 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D dcmb_1088 nucleoside-triphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D dcmb_803 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D dcmb_34 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D dcmb_629 nrd3; ribonucleoside-diphosphate reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D dcmb_249 nrd1; ribonucleoside-diphosphate reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D dcmb_358 nrd2; ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D dcmb_1128 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1]
D dcmb_561 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1]
D dcmb_5 relA; GTP pyrophosphokinase, (p)ppGpp synthetase I K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D dcmb_911 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D dcmb_760 adeC; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D dcmb_1495 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D dcmb_505 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D dcmb_1523 nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D dcmb_1501 HIT family protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
C 00240 Pyrimidine metabolism [PATH:dmd00240]
D dcmb_1065 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D dcmb_1064 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D dcmb_1062 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D dcmb_1063 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D dcmb_1231 dihydroorotate dehydrogenase 1B K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D dcmb_1066 pyrK; dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D dcmb_1057 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D dcmb_12 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D dcmb_389 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D dcmb_406 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D dcmb_1523 nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D dcmb_1005 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D dcmb_1268 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D dcmb_766 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D dcmb_1061 pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D dcmb_1495 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D dcmb_629 nrd3; ribonucleoside-diphosphate reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D dcmb_249 nrd1; ribonucleoside-diphosphate reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D dcmb_358 nrd2; ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D dcmb_425 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D dcmb_747 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D dcmb_427 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D dcmb_786 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D dcmb_1343 thyX; thymidylate synthase thyX K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:dmd00250]
D dcmb_1241 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D dcmb_155 arcB; ornithine cyclodeaminase K19244 ala; alanine dehydrogenase [EC:1.4.1.1]
D dcmb_1119 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D dcmb_1120 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D dcmb_911 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D dcmb_807 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D dcmb_1062 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D dcmb_37 putative glutamate synthase, archeael type K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D dcmb_1008 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_1392 putative glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_1065 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D dcmb_1064 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D dcmb_392 purQ; phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D dcmb_540 glmS; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D dcmb_1273 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:dmd00260]
D dcmb_1519 metL; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D dcmb_907 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D dcmb_1069 metM; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D dcmb_1068 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D dcmb_175 threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D dcmb_448 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D dcmb_711 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D dcmb_1521 cofactor-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D dcmb_607 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D dcmb_1337 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D dcmb_1336 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D dcmb_971 pyridoxal-phosphate dependent TrpB-like protein K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:dmd00270]
D dcmb_1476 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D dcmb_1020 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D dcmb_521 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D dcmb_526 mtaP; 5'-methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D dcmb_527 mtnA; methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D dcmb_727 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87]
D dcmb_260 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D dcmb_522 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D dcmb_1519 metL; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D dcmb_907 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D dcmb_1069 metM; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D dcmb_855 DUF39 domain-containing protein K23975 E2.8.1.16; L-aspartate semialdehyde sulfurtransferase [EC:2.8.1.16]
D dcmb_854 (NIL) domain-containing ferredoxin K23976 K23976; L-aspartate semialdehyde sulfurtransferase ferredoxin
D dcmb_9 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D dcmb_462 mdh; L-lactate dehydrogenase-like malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D dcmb_607 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00280 Valine, leucine and isoleucine degradation [PATH:dmd00280]
D dcmb_9 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:dmd00290]
D dcmb_459 leuC1; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D dcmb_795 leuC2; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D dcmb_460 leuD1; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D dcmb_794 leuD2; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D dcmb_793 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D dcmb_800 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D dcmb_799 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D dcmb_798 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D dcmb_801 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D dcmb_9 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D dcmb_792 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D dcmb_797 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:dmd00300]
D dcmb_1069 metM; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D dcmb_1519 metL; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D dcmb_907 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D dcmb_908 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D dcmb_906 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D dcmb_1117 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D dcmb_708 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D dcmb_707 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D dcmb_543 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00310 Lysine degradation
D dcmb_223 beta-lysine acetyltransferase/lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D dcmb_634 lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
C 00220 Arginine biosynthesis [PATH:dmd00220]
D dcmb_1253 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D dcmb_1119 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D dcmb_1120 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D dcmb_392 purQ; phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D dcmb_1008 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_1392 putative glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_1065 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D dcmb_1064 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D dcmb_468 acetyltransferase, GNAT family K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D dcmb_1115 argJ; glutamate N-acetyltransferase / N-acetylglutamate synthase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D dcmb_1116 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D dcmb_1512 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D dcmb_1117 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:dmd00330]
D dcmb_196 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D dcmb_1141 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D dcmb_1147 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00340 Histidine metabolism [PATH:dmd00340]
D dcmb_812 hisG; ATP phosphoribosyltransferase catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D dcmb_1188 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D dcmb_1190 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D dcmb_1017 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D dcmb_895 hisF1; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D dcmb_1014 hisF2; imidazole glycerol phosphate synthase, cyclase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D dcmb_809 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D dcmb_810 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D dcmb_658 cobD; L-threonine 3-O-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D dcmb_811 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism
D dcmb_810 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D dcmb_658 cobD; L-threonine 3-O-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00360 Phenylalanine metabolism [PATH:dmd00360]
D dcmb_951 paaK; phenylacetate-coenzyme A ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D dcmb_871 thioesterase family protein K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D dcmb_810 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D dcmb_658 cobD; L-threonine 3-O-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:dmd00380]
D dcmb_645 putative cyclase K07130 kynB; arylformamidase [EC:3.5.1.9]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:dmd00400]
D dcmb_479 aroF1; 3-deoxy-D-arabino heptulosonate 7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D dcmb_1335 aroF2; 3-deoxy-D-arabino heptulosonate 7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D dcmb_478 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D dcmb_412 dehydroquinate synthase family protein K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D dcmb_477 aroD; 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D dcmb_475 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D dcmb_474 aroA; 5-enolpyruvylshikimate-3-phosphate synthase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D dcmb_473 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D dcmb_1330 trpE; anthranilate synthase, aminase subunit K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D dcmb_1331 trpG; anthranilate synthase, amidotransferase subunit K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D dcmb_1332 trpD2; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D dcmb_148 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D dcmb_1334 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D dcmb_1333 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D dcmb_1337 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D dcmb_1336 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D dcmb_971 pyridoxal-phosphate dependent TrpB-like protein K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D dcmb_472 pheA; bifunctional P-protein, chorismate mutase/prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D dcmb_471 putative arogenate/prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D dcmb_1445 pdt; prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D dcmb_810 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D dcmb_658 cobD; L-threonine 3-O-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:dmd00410]
D dcmb_769 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D dcmb_771 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism
D dcmb_155 arcB; ornithine cyclodeaminase K19244 ala; alanine dehydrogenase [EC:1.4.1.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:dmd00450]
D dcmb_551 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D dcmb_401 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D dcmb_448 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:dmd00470]
D dcmb_635 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D dcmb_392 purQ; phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D dcmb_708 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D dcmb_543 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:dmd00480]
D dcmb_1310 hypothetical protein K00682 GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]
D dcmb_967 pepA; cytosol aminopeptidase PepA K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:dmd00540]
D dcmb_210 sugar isomerase superfamily protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D dcmb_209 GHMP kinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:dmd00541]
D dcmb_207 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D dcmb_539 glmU2; UDP-N-acetylglucosamine pyrophosphorylase/Glucosamine-1-phosphate N-acetyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D dcmb_538 glmU1; UDP-N-acetylglucosamine pyrophosphorylase/Glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:dmd00550]
D dcmb_635 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D dcmb_387 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:dmd00543]
D dcmb_216 putative polysaccharide pyruvyl transferase domain-containing protein K16710 wcaK; colanic acid/amylovoran biosynthesis protein WcaK/AmsJ
D dcmb_1476 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:dmd00730]
D dcmb_743 thiamin biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D dcmb_253 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D dcmb_713 dxs; 1-deoxy-D-xylulose 5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D dcmb_751 thiE; thiamin-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D dcmb_409 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D dcmb_505 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:dmd00740]
D dcmb_1052 ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D dcmb_1054 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D dcmb_1051 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D dcmb_1053 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D dcmb_610 ribC; riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D dcmb_467 NUDIX hydrolase domain-containing protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:dmd00750]
D dcmb_1068 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D dcmb_394 pdxS; pyridoxal biosynthesis lyase PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D dcmb_606 pdxT; glutamine amidotransferase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:dmd00760]
D dcmb_1241 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D dcmb_1478 nadA; quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D dcmb_1240 nadC; quinolinate phosphoribosyltransferase (decarboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D dcmb_1277 putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D dcmb_766 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D dcmb_3 nadD; putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D dcmb_1523 nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D dcmb_1007 nadE; glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D dcmb_1150 competence/damage-inducible protein CinA C-terminal domain-containing protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D dcmb_469 putative inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:dmd00770]
D dcmb_800 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D dcmb_799 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D dcmb_798 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D dcmb_801 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D dcmb_770 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D dcmb_771 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D dcmb_440 coaX; type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D dcmb_441 coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D dcmb_1523 nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D dcmb_193 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D dcmb_1182 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D dcmb_456 acpS; holo-[acyl-carrier protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D dcmb_9 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D dcmb_769 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:dmd00780]
D dcmb_898 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D dcmb_1136 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D dcmb_1131 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D dcmb_816 biotin--acetyl-CoA carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:dmd00790]
D dcmb_1067 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D dcmb_1490 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D dcmb_1489 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D dcmb_15 folC; dihydrofolate synthase/folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D dcmb_1052 ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D dcmb_1491 6-pyruvoyl tetrahydrobiopterin synthase-like protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D dcmb_124 nucleotide binding domain protein/MobA protein K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:dmd00670]
D dcmb_670 folD; methylenetetrahydrofolate dehydrogenase (NADP+)/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D dcmb_448 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D dcmb_680 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D dcmb_1276 purH; IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D dcmb_1528 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D dcmb_786 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D dcmb_1343 thyX; thymidylate synthase thyX K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D dcmb_1100 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:dmd00860]
D dcmb_1224 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D dcmb_245 tetrapyrrole methylase superfamily protein K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289]
D dcmb_150 cbiA; cobyrinic acid A,C-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D dcmb_1086 cobA3; cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D dcmb_250 cobA1; cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D dcmb_1024 cobA2; cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D dcmb_870 cobQ; cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D dcmb_1023 cbiB2; cobalamin biosynthesis protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D dcmb_657 cbiB1; adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D dcmb_251 adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D dcmb_656 cbiZ; adenosylcobinamide amidohydrolase, CbiZ K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90]
D dcmb_1046 cbiZ; adenosylcobinamide amidohydrolase, CbiZ K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90]
D dcmb_662 cobU; cobinamide kinase/adenosylcobinamide phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D dcmb_660 cobS; cobalamin synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D dcmb_659 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D dcmb_661 cobC; alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D dcmb_889 ferritin-like superfamily protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:dmd00130]
D dcmb_410 SAM-dependent methyltransferase, UbiE/COQ5 family K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D dcmb_411 SAM-dependent methyltransferase, UbiE/COQ5 family K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D dcmb_413 UbiA prenyltransferase family K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:dmd00900]
D dcmb_713 dxs; 1-deoxy-D-xylulose 5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D dcmb_385 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D dcmb_57 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D dcmb_417 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D dcmb_58 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D dcmb_383 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D dcmb_1203 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D dcmb_402 polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D dcmb_387 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D dcmb_648 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D dcmb_539 glmU2; UDP-N-acetylglucosamine pyrophosphorylase/Glucosamine-1-phosphate N-acetyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:dmd00332]
D dcmb_1141 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D dcmb_1147 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:dmd00261]
D dcmb_1519 metL; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D dcmb_907 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D dcmb_908 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D dcmb_906 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:dmd00521]
D dcmb_48 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D dcmb_914 ino1; myo-Inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D dcmb_539 glmU2; UDP-N-acetylglucosamine pyrophosphorylase/Glucosamine-1-phosphate N-acetyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D dcmb_48 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis
D dcmb_539 glmU2; UDP-N-acetylglucosamine pyrophosphorylase/Glucosamine-1-phosphate N-acetyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
C 00401 Novobiocin biosynthesis [PATH:dmd00401]
D dcmb_471 putative arogenate/prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D dcmb_810 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D dcmb_658 cobD; L-threonine 3-O-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D dcmb_1330 trpE; anthranilate synthase, aminase subunit K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D dcmb_1331 trpG; anthranilate synthase, amidotransferase subunit K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D dcmb_1135 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D dcmb_1136 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D dcmb_1131 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D dcmb_1138 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D dcmb_521 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
C 00627 Aminobenzoate degradation
D dcmb_964 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:dmd00633]
D dcmb_136 hupS; [Ni/Fe] hydrogenase, group 1, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D dcmb_1018 putative oxidoreductase, electron transferring subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D dcmb_693 porA; pyruvate ferredoxin oxidoreductase, subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D dcmb_694 porB; pyruvate ferredoxin oxidoreductase, subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D dcmb_691 porC; pyruvate ferredoxin oxidoreductase, subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D dcmb_692 porD; pyruvate ferredoxin oxidoreductase, subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:dmd03020]
D dcmb_611 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D dcmb_612 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D dcmb_512 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:dmd03010]
D dcmb_391 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D dcmb_490 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D dcmb_511 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D dcmb_501 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D dcmb_983 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D dcmb_481 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D dcmb_498 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D dcmb_516 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D dcmb_483 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D dcmb_510 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D dcmb_480 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D dcmb_509 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D dcmb_497 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D dcmb_904 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D dcmb_575 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D dcmb_493 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D dcmb_981 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D dcmb_488 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D dcmb_1525 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D dcmb_362 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D dcmb_927 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D dcmb_487 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D dcmb_484 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D dcmb_485 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D dcmb_496 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D dcmb_499 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D dcmb_925 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D dcmb_550 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D dcmb_926 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D dcmb_928 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D dcmb_515 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D dcmb_494 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D dcmb_503 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D dcmb_491 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D dcmb_513 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D dcmb_500 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D dcmb_351 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D dcmb_718 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D dcmb_1184 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D dcmb_489 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D dcmb_486 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D dcmb_495 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D dcmb_1311 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D dcmb_1185 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D dcmb_1121 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D dcmb_492 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D dcmb_502 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D dcmb_1186 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D dcmb_1134 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D dcmb_931 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D dcmb_980 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D dcmb_719 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D dcmb_508 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D dcmb_955 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D dcmb_53 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D dcmb_54 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:dmd00970]
D dcmb_60 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D dcmb_337 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D dcmb_1449 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D dcmb_690 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D dcmb_892 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D dcmb_1327 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D dcmb_715 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D dcmb_1471 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D dcmb_777 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D dcmb_984 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D dcmb_1300 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D dcmb_960 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D dcmb_776 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D dcmb_1511 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D dcmb_959 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D dcmb_1299 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D dcmb_820 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D dcmb_701 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D dcmb_893 tRNA-His K14226 tRNA-His; tRNA His
D dcmb_954 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D dcmb_775 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D dcmb_1298 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D dcmb_1302 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D dcmb_724 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D dcmb_1326 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D dcmb_841 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D dcmb_785 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D dcmb_434 tRNA-Met K14230 tRNA-Met; tRNA Met
D dcmb_703 tRNA-Met K14230 tRNA-Met; tRNA Met
D dcmb_1173 tRNA-Met K14230 tRNA-Met; tRNA Met
D dcmb_774 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D dcmb_729 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D dcmb_698 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D dcmb_1522 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D dcmb_581 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D dcmb_687 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D dcmb_688 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D dcmb_1246 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D dcmb_935 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D dcmb_396 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D dcmb_933 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D dcmb_1297 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D dcmb_934 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D dcmb_1328 tRNA-Val K14237 tRNA-Val; tRNA Val
D dcmb_177 tRNA-Val K14237 tRNA-Val; tRNA Val
D dcmb_1047 tRNA-Val K14237 tRNA-Val; tRNA Val
D dcmb_1224 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D dcmb_1194 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D dcmb_1448 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D dcmb_1193 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D dcmb_49 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D dcmb_676 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D dcmb_756 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D dcmb_721 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D dcmb_584 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D dcmb_59 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D dcmb_401 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D dcmb_1528 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D dcmb_442 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D dcmb_197 leuS; leucine-tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D dcmb_974 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D dcmb_585 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D dcmb_1129 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D dcmb_382 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D dcmb_813 hisZ; ATP phosphoribosyltransferase regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D dcmb_6 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D dcmb_379 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D dcmb_380 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D dcmb_609 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D dcmb_1202 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:dmd03060]
D dcmb_504 secY; preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D dcmb_930 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D dcmb_1447 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D dcmb_347 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D dcmb_346 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D dcmb_1242 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D dcmb_976 cytochrome oxidase biogenesis (Oxa1) family protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D dcmb_446 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D dcmb_332 arsA; arsenite-activated ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D dcmb_1486 tatB; putative sec-independent protein translocase protein TatB K03116 tatA; sec-independent protein translocase protein TatA
D dcmb_1487 sec-independent protein translocase TatA/TatE K03116 tatA; sec-independent protein translocase protein TatA
D dcmb_1488 tatA; sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D dcmb_1485 tatC; sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D dcmb_1056 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D dcmb_1233 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:dmd04122]
D dcmb_253 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D dcmb_748 mnmA; tRNA-specific 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
C 03050 Proteasome
C 03018 RNA degradation [PATH:dmd03018]
D dcmb_601 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D dcmb_905 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D dcmb_187 ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D dcmb_1266 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D dcmb_1494 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D dcmb_450 beta-lactamase domain-containing protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D dcmb_1258 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D dcmb_1287 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D dcmb_348 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:dmd03030]
D dcmb_1321 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D dcmb_592 dnaX; DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D dcmb_544 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D dcmb_46 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D dcmb_1089 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D dcmb_312 Beta clamp domain protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D dcmb_549 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D dcmb_560 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D dcmb_982 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D dcmb_375 hypothetical protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D dcmb_749 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D dcmb_1249 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D dcmb_604 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:dmd03410]
D dcmb_869 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D dcmb_1247 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D dcmb_449 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D dcmb_404 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D dcmb_1249 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D dcmb_899 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D dcmb_604 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:dmd03420]
D dcmb_1140 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D dcmb_555 uvrA; UvrABC system, subunit A K03701 uvrA; excinuclease ABC subunit A
D dcmb_452 uvrB; UvrABC system, subunit B K03702 uvrB; excinuclease ABC subunit B
D dcmb_1079 uvrC; UvrABC system, subunit C K03703 uvrC; excinuclease ABC subunit C
D dcmb_1060 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D dcmb_1249 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D dcmb_604 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:dmd03430]
D dcmb_1082 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D dcmb_1059 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D dcmb_1060 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D dcmb_899 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D dcmb_982 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D dcmb_1321 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D dcmb_1089 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D dcmb_312 Beta clamp domain protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D dcmb_592 dnaX; DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D dcmb_46 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D dcmb_544 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D dcmb_604 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:dmd03440]
D dcmb_899 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D dcmb_982 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D dcmb_587 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D dcmb_590 recR; recombination protein RecR K06187 recR; recombination protein RecR
D dcmb_1492 RecA protein K03553 recA; recombination protein RecA
D dcmb_1249 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D dcmb_453 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D dcmb_277 ATP-dependent DNA helicase-like protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D dcmb_613 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D dcmb_454 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D dcmb_1127 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D dcmb_1321 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D dcmb_1089 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D dcmb_312 Beta clamp domain protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D dcmb_592 dnaX; DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D dcmb_46 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D dcmb_544 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D dcmb_350 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:dmd02010]
D dcmb_161 pstS; phosphate transport system permease protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D dcmb_162 pstC; phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D dcmb_163 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D dcmb_164 pstB; phosphate transport system permease protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D dcmb_876 hydrophobic amino acid uptake transporter (HAAT) family, periplasmic substrate binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D dcmb_877 hydrophobic amino acid uptake transporter (HAAT) family, periplasmic substrate binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D dcmb_879 hydrophobic amino acid uptake transporter (HAAT) family, permease K01997 livH; branched-chain amino acid transport system permease protein
D dcmb_878 hydrophobic amino acid uptake transporter (HAAT) family, permease K01998 livM; branched-chain amino acid transport system permease protein
D dcmb_872 branched-chain amino acid transport ATP-binding protein LivG K01995 livG; branched-chain amino acid transport system ATP-binding protein
D dcmb_875 hydrophobic amino acid uptake transporter (HAAT) family, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D dcmb_580 PepT Family, periplasmic binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D dcmb_998 PepT transporter family, periplasmic substrate binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D dcmb_997 PepT transporter family, permease K15581 oppB; oligopeptide transport system permease protein
D dcmb_996 PepT transporter family, permease K15582 oppC; oligopeptide transport system permease protein
D dcmb_995 PepT transporter family, ATPase K15583 oppD; oligopeptide transport system ATP-binding protein
D dcmb_994 PepT transporter family, ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
D dcmb_637 Mg2++ transporter, periplasmic substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D dcmb_639 Mg2++ transporter, permease K09816 znuB; zinc transport system permease protein
D dcmb_638 Mg2++ transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D dcmb_1048 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D dcmb_423 lipooligosaccharide exporter permease K09694 nodJ; lipooligosaccharide transport system permease protein
D dcmb_422 lipooligosaccharide exporter ATP-binding protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D dcmb_1037 putative multidrug exporter K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D dcmb_1038 putative multidrug exporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:dmd03070]
D dcmb_1211 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D dcmb_347 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D dcmb_346 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D dcmb_930 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D dcmb_1447 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D dcmb_504 secY; preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D dcmb_1242 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D dcmb_976 cytochrome oxidase biogenesis (Oxa1) family protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D dcmb_446 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D dcmb_1486 tatB; putative sec-independent protein translocase protein TatB K03116 tatA; sec-independent protein translocase protein TatA
D dcmb_1487 sec-independent protein translocase TatA/TatE K03116 tatA; sec-independent protein translocase protein TatA
D dcmb_1488 tatA; sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D dcmb_1485 tatC; sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:dmd02020]
D dcmb_159 phoR; phosphate regulon sensor protein PhoR (SphS) K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D dcmb_1011 signal transduction response regulator, OmpR family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D dcmb_85 rdhD; signal transduction response regulator, OmpR family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D dcmb_152 CheY-type receiver domain-containing protein K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D dcmb_161 pstS; phosphate transport system permease protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D dcmb_1144 serine protease, DegP/HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_973 serine protease, DegP-HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_972 serine protease, DegP-HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_1145 serine protease, DegP/HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_79 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_93 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1368 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1371 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1386 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1424 signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_180 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_94 rdhC; PAS/PAC sensor signal transduction histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D dcmb_233 rdhC; PAS/PAC sensor signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D dcmb_1378 rdhD; signal transduction response regulator, OmpR family K07668 vicR; two-component system, OmpR family, response regulator VicR
D dcmb_1 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D dcmb_664 signal transduction histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D dcmb_443 PAS/PAC sensor signal transduction histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D dcmb_1210 signal transduction response regulator, LuxR family K07692 degU; two-component system, NarL family, response regulator DegU
D dcmb_444 signal transduction response regulator, LuxR family K11618 liaR; two-component system, NarL family, response regulator LiaR
D dcmb_1009 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D dcmb_1008 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_1392 putative glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_1220 general secretion protein G K02650 pilA; type IV pilus assembly protein PilA
D dcmb_157 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA
D dcmb_136 hupS; [Ni/Fe] hydrogenase, group 1, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D dcmb_258 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:dmd02024]
D dcmb_1330 trpE; anthranilate synthase, aminase subunit K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D dcmb_1331 trpG; anthranilate synthase, amidotransferase subunit K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D dcmb_79 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_93 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1368 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1371 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1386 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1424 signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_180 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_876 hydrophobic amino acid uptake transporter (HAAT) family, periplasmic substrate binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D dcmb_877 hydrophobic amino acid uptake transporter (HAAT) family, periplasmic substrate binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D dcmb_879 hydrophobic amino acid uptake transporter (HAAT) family, permease K01997 livH; branched-chain amino acid transport system permease protein
D dcmb_878 hydrophobic amino acid uptake transporter (HAAT) family, permease K01998 livM; branched-chain amino acid transport system permease protein
D dcmb_872 branched-chain amino acid transport ATP-binding protein LivG K01995 livG; branched-chain amino acid transport system ATP-binding protein
D dcmb_875 hydrophobic amino acid uptake transporter (HAAT) family, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D dcmb_880 faa; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D dcmb_970 lcfB; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D dcmb_258 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D dcmb_1054 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D dcmb_580 PepT Family, periplasmic binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D dcmb_998 PepT transporter family, periplasmic substrate binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D dcmb_997 PepT transporter family, permease K15581 oppB; oligopeptide transport system permease protein
D dcmb_996 PepT transporter family, permease K15582 oppC; oligopeptide transport system permease protein
D dcmb_995 PepT transporter family, ATPase K15583 oppD; oligopeptide transport system ATP-binding protein
D dcmb_994 PepT transporter family, ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
D dcmb_1348 appA; 5-6 amino acyl oligopeptide transporter AppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D dcmb_1347 appB; 5-6 amino acyl oligopeptide transporter AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D dcmb_1346 appC; 5-6 amino acyl oligopeptide transporter AppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D dcmb_1345 appD; 5-6 amino acyl oligopeptide transporter AppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D dcmb_1344 appF; 5-6 amino acyl oligopeptide transporter AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D dcmb_1204 lacD; tagatose 1,6-diphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D dcmb_976 cytochrome oxidase biogenesis (Oxa1) family protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D dcmb_930 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D dcmb_1447 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D dcmb_504 secY; preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D dcmb_1242 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D dcmb_446 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D dcmb_1210 signal transduction response regulator, LuxR family K07692 degU; two-component system, NarL family, response regulator DegU
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D dcmb_559 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D dcmb_601 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance
D dcmb_580 PepT Family, periplasmic binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D dcmb_998 PepT transporter family, periplasmic substrate binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D dcmb_997 PepT transporter family, permease K15581 oppB; oligopeptide transport system permease protein
D dcmb_996 PepT transporter family, permease K15582 oppC; oligopeptide transport system permease protein
D dcmb_995 PepT transporter family, ATPase K15583 oppD; oligopeptide transport system ATP-binding protein
D dcmb_994 PepT transporter family, ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
C 01502 Vancomycin resistance [PATH:dmd01502]
D dcmb_635 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
C 01503 Cationic antimicrobial peptide (CAMP) resistance
D dcmb_1144 serine protease, DegP/HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_973 serine protease, DegP-HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_972 serine protease, DegP-HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_1145 serine protease, DegP/HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:dmd01000]
C 01001 Protein kinases [BR:dmd01001]
D dcmb_159 phoR; phosphate regulon sensor protein PhoR (SphS) K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D dcmb_94 rdhC; PAS/PAC sensor signal transduction histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D dcmb_233 rdhC; PAS/PAC sensor signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D dcmb_664 signal transduction histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D dcmb_443 PAS/PAC sensor signal transduction histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D dcmb_149 PAS/PAC sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D dcmb_1152 PAS domain signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:dmd01009]
D dcmb_522 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
C 01002 Peptidases and inhibitors [BR:dmd01002]
D dcmb_1233 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D dcmb_1221 comC; type IV prepilin leader peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D dcmb_134 hupD; hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D dcmb_803 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D dcmb_1273 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D dcmb_540 glmS; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D dcmb_142 ThiJ/PfpI family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D dcmb_741 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D dcmb_967 pepA; cytosol aminopeptidase PepA K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D dcmb_506 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D dcmb_683 aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D dcmb_845 aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-]
D dcmb_403 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D dcmb_1417 ATPase central domain-containing protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D dcmb_1475 peptidase, M48 family K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D dcmb_384 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D dcmb_1028 putative membrane protein K24131 prsW; protease PrsW [EC:3.4.-.-]
D dcmb_1144 serine protease, DegP/HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_973 serine protease, DegP-HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_972 serine protease, DegP-HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_1145 serine protease, DegP/HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_293 peptidase S8 and S53, subtilisin, kexin, sedolisin K17734 aprX; serine protease AprX [EC:3.4.21.-]
D dcmb_678 clpP; ATP-dependent Clp protease, proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D dcmb_325 conserved hypothetical protein TIGR02653 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D dcmb_1526 lexA; SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D dcmb_1056 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D dcmb_171 putative lysophospholipase K01054 MGLL; acylglycerol lipase [EC:3.1.1.23]
D dcmb_378 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D dcmb_535 PmbA/TldD family protein K03592 pmbA; PmbA protein
C 01003 Glycosyltransferases [BR:dmd01003]
D dcmb_206 glycosyltransferase, family 2 K22844 aglG; glucosyl-dolichyl phosphate glucuronosyltransferase [EC:2.4.1.356]
D dcmb_913 glycosyltransferase, group 1 protein K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D dcmb_1222 mannosyl-3-phosphoglycerate synthase/mannosyl-3-phosphoglycerate phosphatase K05947 E2.4.1.217; mannosyl-3-phosphoglycerate synthase [EC:2.4.1.217]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:dmd01005]
D dcmb_210 sugar isomerase superfamily protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:dmd01011]
D dcmb_635 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
C 01004 Lipid biosynthesis proteins [BR:dmd01004]
D dcmb_1135 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D dcmb_898 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D dcmb_1136 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D dcmb_1131 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D dcmb_1072 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D dcmb_880 faa; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D dcmb_970 lcfB; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D dcmb_552 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D dcmb_900 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D dcmb_8 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D dcmb_1497 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D dcmb_1255 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:dmd01006]
D dcmb_402 polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D dcmb_387 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D dcmb_709 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D dcmb_413 UbiA prenyltransferase family K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
C 01007 Amino acid related enzymes [BR:dmd01007]
D dcmb_1224 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D dcmb_609 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D dcmb_1202 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D dcmb_59 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D dcmb_1129 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D dcmb_401 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D dcmb_974 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D dcmb_442 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D dcmb_197 leuS; leucine-tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D dcmb_585 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D dcmb_676 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D dcmb_813 hisZ; ATP phosphoribosyltransferase regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D dcmb_6 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D dcmb_756 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D dcmb_584 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D dcmb_382 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D dcmb_721 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D dcmb_49 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D dcmb_379 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D dcmb_380 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D dcmb_707 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D dcmb_1201 aspC; aspartate aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-]
D dcmb_810 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D dcmb_658 cobD; L-threonine 3-O-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D dcmb_1117 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D dcmb_9 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:dmd00194]
D dcmb_395 Rieske Fe-S cluster domain-containing protein K02636 petC; cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
D dcmb_572 atpC; ATP synthase, subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D dcmb_571 atpD; ATP synthase, subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D dcmb_570 atpG; ATP synthase, subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D dcmb_569 atpA; ATP synthase, subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D dcmb_568 atpH; ATP synthase, subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D dcmb_567 atpF; ATP synthase, subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D dcmb_566 atpE; ATP synthase, subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D dcmb_565 atpB; ATP synthase, subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D dcmb_564 hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:dmd03000]
D dcmb_260 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D dcmb_1295 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D dcmb_1466 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D dcmb_1305 DNA binding protein, excisionase family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D dcmb_1431 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D dcmb_1270 transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D dcmb_1033 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D dcmb_636 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D dcmb_19 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D dcmb_1359 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D dcmb_258 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D dcmb_1481 Rrf2-like protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D dcmb_939 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D dcmb_336 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D dcmb_1108 transcriptional regulator, ArsR family K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
D dcmb_773 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D dcmb_816 biotin--acetyl-CoA carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D dcmb_270 HTH domain-containing protein, XRE family K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D dcmb_305 HTH domain-containing protein, XRE family K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D dcmb_896 hypothetical protein K09720 nrpRI; HTH-type transcriptional regulator, global nitrogen regulator NrpRI
D dcmb_1197 HTH domain-containing protein, XRE family K07729 K07729; putative transcriptional regulator
D dcmb_557 HTH domain-containing protein, XRE family K07729 K07729; putative transcriptional regulator
D dcmb_271 HTH domain-containing protein, XRE family K07729 K07729; putative transcriptional regulator
D dcmb_1353 winged helix-turn-helix transcription repressor K07730 K07730; putative transcriptional regulator
D dcmb_1483 CprC-like protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D dcmb_1484 CprC-like protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D dcmb_242 CprC-like protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D dcmb_1397 ParB-like nuclease domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D dcmb_1260 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D dcmb_1061 pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D dcmb_1232 putative transcriptional regulator, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D dcmb_357 nrdR; ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D dcmb_353 mraZ; MraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:dmd03021]
D dcmb_512 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D dcmb_611 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D dcmb_612 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D dcmb_559 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D dcmb_920 nusA; transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D dcmb_1137 nusB; transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB
D dcmb_929 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D dcmb_1232 putative transcriptional regulator, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D dcmb_738 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D dcmb_1266 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:dmd03019]
D dcmb_962 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D dcmb_450 beta-lactamase domain-containing protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D dcmb_1494 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D dcmb_187 ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D dcmb_601 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D dcmb_905 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D dcmb_1266 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D dcmb_1258 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D dcmb_1287 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D dcmb_348 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
C 03041 Spliceosome
C 03011 Ribosome [BR:dmd03011]
D dcmb_391 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D dcmb_490 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D dcmb_511 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D dcmb_501 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D dcmb_983 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D dcmb_481 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D dcmb_498 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D dcmb_516 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D dcmb_483 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D dcmb_510 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D dcmb_480 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D dcmb_509 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D dcmb_497 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D dcmb_904 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D dcmb_575 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D dcmb_493 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D dcmb_981 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D dcmb_488 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D dcmb_1525 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D dcmb_362 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D dcmb_927 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D dcmb_487 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D dcmb_484 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D dcmb_485 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D dcmb_496 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D dcmb_499 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D dcmb_550 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D dcmb_926 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D dcmb_928 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D dcmb_925 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D dcmb_515 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D dcmb_494 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D dcmb_503 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D dcmb_491 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D dcmb_513 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D dcmb_500 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D dcmb_351 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D dcmb_718 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D dcmb_1184 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D dcmb_489 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D dcmb_486 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D dcmb_495 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D dcmb_1185 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D dcmb_1121 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D dcmb_492 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D dcmb_502 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D dcmb_1186 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D dcmb_1134 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D dcmb_931 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D dcmb_980 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D dcmb_719 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D dcmb_508 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D dcmb_1311 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D dcmb_54 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D dcmb_955 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D dcmb_53 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:dmd03009]
D dcmb_962 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D dcmb_2 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D dcmb_1232 putative transcriptional regulator, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D dcmb_920 nusA; transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D dcmb_1137 nusB; transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB
D dcmb_929 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D dcmb_416 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D dcmb_192 putative ribosomal RNA small subunit methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D dcmb_744 gidB; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D dcmb_354 mraW; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D dcmb_399 tetrapyrrole methylase superfamily protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D dcmb_1002 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D dcmb_758 rsuA; pseudouridine synthase, RsuA family K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D dcmb_1234 ribosomal large subunit pseudouridine synthase, RluD subfamily K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D dcmb_615 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D dcmb_573 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D dcmb_50 holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D dcmb_1254 GTP-binding protein EngA K03977 engA; GTPase
D dcmb_705 GTP-binding protein HflX K03665 hflX; GTPase
D dcmb_802 YrdC/Sua5 family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D dcmb_5 relA; GTP pyrophosphokinase, (p)ppGpp synthetase I K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D dcmb_917 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D dcmb_405 Iojap protein K09710 ybeB; ribosome-associated protein
D dcmb_1229 hypothetical protein K07042 ybeY; probable rRNA maturation factor
D dcmb_1316 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D dcmb_44 GTP-binding and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase
D dcmb_1133 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:dmd03016]
D dcmb_421 polynucleotide adenylyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D dcmb_790 putative RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D dcmb_789 putative archease K24956 ZBTB8OS; protein archease
D dcmb_1224 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D dcmb_382 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D dcmb_974 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D dcmb_197 leuS; leucine-tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D dcmb_401 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D dcmb_1129 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D dcmb_585 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D dcmb_676 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D dcmb_49 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D dcmb_756 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D dcmb_721 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D dcmb_584 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D dcmb_59 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D dcmb_442 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D dcmb_813 hisZ; ATP phosphoribosyltransferase regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D dcmb_6 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D dcmb_379 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D dcmb_380 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D dcmb_609 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D dcmb_1202 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D dcmb_18 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D dcmb_466 HIT domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D dcmb_618 SAM-dependent methyltransferase K15444 TRM9; tRNA (uracil-5-)-methyltransferase TRM9 [EC:2.1.1.229]
D dcmb_514 truA; pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D dcmb_916 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D dcmb_253 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D dcmb_619 histone acetyltransferase, ELP3 family K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
D dcmb_802 YrdC/Sua5 family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D dcmb_709 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D dcmb_979 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D dcmb_1148 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D dcmb_1313 2'-5'-RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D dcmb_1243 miaB; (dimethylallyl)adenosine tRNA methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D dcmb_897 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D dcmb_352 trmD; tRNA (guanine37-N1) -methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D dcmb_748 mnmA; tRNA-specific 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D dcmb_765 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D dcmb_1491 6-pyruvoyl tetrahydrobiopterin synthase-like protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D dcmb_1339 rdhA; reductive dehalogenase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D dcmb_1341 rdhA; reductive dehalogenase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D dcmb_113 rdhA; reductive dehalogenase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D dcmb_120 rdhA; reductive dehalogenase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D dcmb_235 rdhA; reductive dehalogenase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D dcmb_614 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D dcmb_51 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D dcmb_1280 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D dcmb_1285 putative glycoprotease Gcp K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D dcmb_408 P-loop containing protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D dcmb_905 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:dmd03012]
D dcmb_918 translation initiation factor 2 K02519 infB; translation initiation factor IF-2
D dcmb_720 infC; translation initiation factor 3 K02520 infC; translation initiation factor IF-3
D dcmb_226 putative ABC transporter, ATPase domain protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D dcmb_390 translation elongation factor Ts K02357 tsf; elongation factor Ts
D dcmb_932 translation elongation factor Tu K02358 tuf; elongation factor Tu
D dcmb_482 fusA1; elongation factor G K02355 fusA; elongation factor G
D dcmb_1075 fusA2; translation elongation factor G K02355 fusA; elongation factor G
D dcmb_1073 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D dcmb_388 ribosome recycling factor K02838 frr; ribosome recycling factor
D dcmb_1074 modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D dcmb_603 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D dcmb_507 infA; translation initiation factor 1 K02518 infA; translation initiation factor IF-1
D dcmb_837 translation elongation factor P K02356 efp; elongation factor P
D dcmb_682 translation elongation factor P K02356 efp; elongation factor P
D dcmb_836 lysyl-tRNA synthetase-related protein K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D dcmb_577 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:dmd03110]
D dcmb_55 clpC; ATP-dependent Clp protease, ATP-binding subunit ClpC K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D dcmb_1271 ATP-dependent Clp protease, ATP-binding subunit ClpC K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D dcmb_1258 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D dcmb_1287 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D dcmb_1257 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D dcmb_1269 DnaJ-class molecular chaperone CbpA K03686 dnaJ; molecular chaperone DnaJ
D dcmb_1259 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D dcmb_888 heat shock protein, Hsp20 family K13993 HSP20; HSP20 family protein
D dcmb_1286 co-chaperonin GroES K04078 groES; chaperonin GroES
D dcmb_1144 serine protease, DegP/HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_973 serine protease, DegP-HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_972 serine protease, DegP-HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_1145 serine protease, DegP/HtrA family K04771 degP; serine protease Do [EC:3.4.21.107]
D dcmb_403 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D dcmb_1417 ATPase central domain-containing protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D dcmb_565 atpB; ATP synthase, subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D dcmb_1289 hypA; [NiFe] hydrogenase maturation protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D dcmb_1290 hypB; [NiFe] hydrogenase maturation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D dcmb_663 thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:dmd04131]
D dcmb_406 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D dcmb_332 arsA; arsenite-activated ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D dcmb_598 gap; NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:dmd03032]
D dcmb_375 hypothetical protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D dcmb_260 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D dcmb_1 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D dcmb_549 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D dcmb_547 dnaI; helicase loader DnaI K02315 dnaC; DNA replication protein DnaC
D dcmb_560 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D dcmb_982 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D dcmb_1321 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D dcmb_1089 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D dcmb_312 Beta clamp domain protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D dcmb_46 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D dcmb_544 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D dcmb_592 dnaX; DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D dcmb_749 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D dcmb_1249 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D dcmb_604 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D dcmb_1516 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D dcmb_4 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D dcmb_685 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:dmd03036]
D dcmb_260 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D dcmb_962 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D dcmb_1 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D dcmb_642 ftsA2; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D dcmb_355 ftsA1; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D dcmb_451 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D dcmb_641 ftsZ2; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D dcmb_356 ftsZ1; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D dcmb_1397 ParB-like nuclease domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D dcmb_744 gidB; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D dcmb_1078 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD
D dcmb_301 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D dcmb_103 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D dcmb_129 mrp family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
C 03400 DNA repair and recombination proteins [BR:dmd03400]
D dcmb_1317 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D dcmb_869 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D dcmb_1149 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D dcmb_427 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D dcmb_449 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D dcmb_1247 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D dcmb_404 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D dcmb_576 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D dcmb_899 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D dcmb_604 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D dcmb_1249 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D dcmb_555 uvrA; UvrABC system, subunit A K03701 uvrA; excinuclease ABC subunit A
D dcmb_452 uvrB; UvrABC system, subunit B K03702 uvrB; excinuclease ABC subunit B
D dcmb_1079 uvrC; UvrABC system, subunit C K03703 uvrC; excinuclease ABC subunit C
D dcmb_1060 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D dcmb_611 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D dcmb_612 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D dcmb_512 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D dcmb_1140 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D dcmb_1082 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D dcmb_1059 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D dcmb_1321 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D dcmb_1089 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D dcmb_312 Beta clamp domain protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D dcmb_46 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D dcmb_544 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D dcmb_592 dnaX; DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D dcmb_982 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D dcmb_1492 RecA protein K03553 recA; recombination protein RecA
D dcmb_453 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D dcmb_277 ATP-dependent DNA helicase-like protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D dcmb_613 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D dcmb_454 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D dcmb_350 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D dcmb_558 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
D dcmb_757 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D dcmb_56 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D dcmb_1127 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D dcmb_587 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D dcmb_590 recR; recombination protein RecR K06187 recR; recombination protein RecR
D dcmb_989 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D dcmb_100 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D dcmb_1405 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D dcmb_1516 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D dcmb_4 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D dcmb_685 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D dcmb_10 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D dcmb_1526 lexA; SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D dcmb_1493 regulatory protein RecX K03565 recX; regulatory protein
D dcmb_629 nrd3; ribonucleoside-diphosphate reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D dcmb_249 nrd1; ribonucleoside-diphosphate reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D dcmb_358 nrd2; ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:dmd03029]
D dcmb_918 translation initiation factor 2 K02519 infB; translation initiation factor IF-2
D dcmb_720 infC; translation initiation factor 3 K02520 infC; translation initiation factor IF-3
D dcmb_390 translation elongation factor Ts K02357 tsf; elongation factor Ts
D dcmb_932 translation elongation factor Tu K02358 tuf; elongation factor Tu
D dcmb_482 fusA1; elongation factor G K02355 fusA; elongation factor G
D dcmb_1075 fusA2; translation elongation factor G K02355 fusA; elongation factor G
D dcmb_609 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D dcmb_197 leuS; leucine-tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D dcmb_676 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D dcmb_756 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D dcmb_1129 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D dcmb_1194 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D dcmb_1448 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D dcmb_1193 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D dcmb_982 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D dcmb_1258 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D dcmb_1259 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D dcmb_1287 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D dcmb_1286 co-chaperonin GroES K04078 groES; chaperonin GroES
D dcmb_1257 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D dcmb_1269 DnaJ-class molecular chaperone CbpA K03686 dnaJ; molecular chaperone DnaJ
D dcmb_253 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D dcmb_129 mrp family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D dcmb_976 cytochrome oxidase biogenesis (Oxa1) family protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:dmd02000]
D dcmb_1037 putative multidrug exporter K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D dcmb_1038 putative multidrug exporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D dcmb_161 pstS; phosphate transport system permease protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D dcmb_162 pstC; phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D dcmb_163 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D dcmb_164 pstB; phosphate transport system permease protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D dcmb_876 hydrophobic amino acid uptake transporter (HAAT) family, periplasmic substrate binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D dcmb_877 hydrophobic amino acid uptake transporter (HAAT) family, periplasmic substrate binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D dcmb_879 hydrophobic amino acid uptake transporter (HAAT) family, permease K01997 livH; branched-chain amino acid transport system permease protein
D dcmb_878 hydrophobic amino acid uptake transporter (HAAT) family, permease K01998 livM; branched-chain amino acid transport system permease protein
D dcmb_872 branched-chain amino acid transport ATP-binding protein LivG K01995 livG; branched-chain amino acid transport system ATP-binding protein
D dcmb_875 hydrophobic amino acid uptake transporter (HAAT) family, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D dcmb_431 polar amino acid uptake transporter (PAAT) family, substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D dcmb_430 polar amino acid uptake transporter (PAAT) family, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D dcmb_429 polar amino acid uptake transporter (PAAT) family, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D dcmb_580 PepT Family, periplasmic binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D dcmb_998 PepT transporter family, periplasmic substrate binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D dcmb_997 PepT transporter family, permease K15581 oppB; oligopeptide transport system permease protein
D dcmb_996 PepT transporter family, permease K15582 oppC; oligopeptide transport system permease protein
D dcmb_995 PepT transporter family, ATPase K15583 oppD; oligopeptide transport system ATP-binding protein
D dcmb_994 PepT transporter family, ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
D dcmb_1348 appA; 5-6 amino acyl oligopeptide transporter AppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D dcmb_1347 appB; 5-6 amino acyl oligopeptide transporter AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D dcmb_1346 appC; 5-6 amino acyl oligopeptide transporter AppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D dcmb_1345 appD; 5-6 amino acyl oligopeptide transporter AppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D dcmb_1344 appF; 5-6 amino acyl oligopeptide transporter AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D dcmb_255 corrinoid binding protein/precorrin methyltransferase K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D dcmb_784 putative ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D dcmb_653 btuF; corrinoid ABC transporter, corrinoid-binding component BtuF K25034 btuF; cobalamin transport system substrate-binding protein
D dcmb_654 btuC; corrinoid ABC transporter, permease component BtuC K25027 btuC; cobalamin transport system permease protein
D dcmb_655 btuD; corrinoid ABC transporter, ATPase component BtuD K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D dcmb_637 Mg2++ transporter, periplasmic substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D dcmb_639 Mg2++ transporter, permease K09816 znuB; zinc transport system permease protein
D dcmb_638 Mg2++ transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D dcmb_1048 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D dcmb_423 lipooligosaccharide exporter permease K09694 nodJ; lipooligosaccharide transport system permease protein
D dcmb_422 lipooligosaccharide exporter ATP-binding protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D dcmb_1506 BerB-like protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D dcmb_1199 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D dcmb_819 Gld family protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D dcmb_138 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D dcmb_528 putative ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D dcmb_781 permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D dcmb_139 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D dcmb_764 permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D dcmb_1505 BerA-like protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D dcmb_780 ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D dcmb_818 Gld family protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D dcmb_1198 lipooligosaccharide exporter, ATP-binding subunit K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D dcmb_140 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D dcmb_529 putative ABC transporter ATP binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D dcmb_763 ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D dcmb_823 macB; macrolide exporter family protein MacB K02004 ABC.CD.P; putative ABC transport system permease protein
D dcmb_824 macA; macrolide exporter family protein MacA K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D dcmb_782 cysteine desulfurase activator ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D dcmb_420 putative potassium channel protein K10716 kch; voltage-gated potassium channel
D dcmb_1010 amt; ammonium transporter K03320 amt; ammonium transporter, Amt family
D dcmb_1245 large-conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D dcmb_1465 small conductance mechanosensitive ion channel (MscS) family protein K22044 ybiO; moderate conductance mechanosensitive channel
D dcmb_589 divalent metal ion transporter K03284 corA; magnesium transporter
D dcmb_435 divalent metal ion transporter K03284 corA; magnesium transporter
D dcmb_1352 putative crcB protein K06199 crcB; fluoride exporter
D dcmb_1284 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D dcmb_31 cation diffusion facilitator (CDF) family protein K16264 czcD; cobalt-zinc-cadmium efflux system protein
D dcmb_1513 putative potassium exporter K26735 KEA4_5_6; K+:H+ antiporter
D dcmb_689 Na+:H+ antiporter K26730 napA; Na+:H+ antiporter
D dcmb_28 trkH; potassium transporter membrane subunit TrkH K03498 trkH; trk/ktr system potassium uptake protein
D dcmb_25 TrkA-N domain-containing protein K03499 trkA; trk/ktr system potassium uptake protein
D dcmb_26 TrkA-N domain-containing protein K03499 trkA; trk/ktr system potassium uptake protein
D dcmb_29 trkA; peripheral membrane component TrkA of potassium transporter, nucleotide binding component K03499 trkA; trk/ktr system potassium uptake protein
D dcmb_332 arsA; arsenite-activated ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D dcmb_843 arsB; arsenical resistance efflux pump K03893 arsB; arsenical pump membrane protein
D dcmb_1102 arsenical-resistance protein ACR3 K03325 ACR3; arsenite transporter
D dcmb_334 arsenite resistance protein K03325 ACR3; arsenite transporter
D dcmb_436 putative membrane protein K09125 yhhQ; queuosine precursor transporter
D dcmb_1307 membrane protein, MarC family K05595 marC; multiple antibiotic resistance protein
D dcmb_1019 YebN family protein K23242 mntP; manganese efflux pump family protein
D dcmb_723 hypothetical protein K03646 tolA; colicin import membrane protein
D dcmb_734 hppA1; membrane-bound proton-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D dcmb_753 hppA2; membrane-bound proton-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D dcmb_625 cytochrome C biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D dcmb_1358 feoA domain-containing protein K04758 feoA; ferrous iron transport protein A
D dcmb_1357 feoB; ferrous iron transport protein K04759 feoB; ferrous iron transport protein B
D dcmb_796 Mg2+ transporter-C (MgtC) family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:dmd02044]
D dcmb_1211 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D dcmb_1221 comC; type IV prepilin leader peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D dcmb_1220 general secretion protein G K02650 pilA; type IV pilus assembly protein PilA
D dcmb_157 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA
D dcmb_1212 type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC
D dcmb_1218 Tfp pilus assembly protein, ATPase K02662 pilM; type IV pilus assembly protein PilM
D dcmb_856 ATPase, PilT family K02669 pilT; twitching motility protein PilT
D dcmb_1114 ATPase, PilT family K02669 pilT; twitching motility protein PilT
D dcmb_1219 twitching mobility protein K02669 pilT; twitching motility protein PilT
D dcmb_24 putative competence protein ComEA K02237 comEA; competence protein ComEA
D dcmb_425 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D dcmb_23 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D dcmb_446 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D dcmb_347 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D dcmb_930 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D dcmb_346 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D dcmb_1447 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D dcmb_504 secY; preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D dcmb_1242 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D dcmb_976 cytochrome oxidase biogenesis (Oxa1) family protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D dcmb_1486 tatB; putative sec-independent protein translocase protein TatB K03116 tatA; sec-independent protein translocase protein TatA
D dcmb_1487 sec-independent protein translocase TatA/TatE K03116 tatA; sec-independent protein translocase protein TatA
D dcmb_1488 tatA; sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D dcmb_1485 tatC; sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:dmd02042]
D dcmb_1284 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D dcmb_225 Hly-III-like protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:dmd02022]
D dcmb_159 phoR; phosphate regulon sensor protein PhoR (SphS) K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D dcmb_1011 signal transduction response regulator, OmpR family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D dcmb_85 rdhD; signal transduction response regulator, OmpR family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D dcmb_152 CheY-type receiver domain-containing protein K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D dcmb_79 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_93 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1368 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1371 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1386 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_1424 signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_180 rdhD; signal transduction response regulator, OmpR family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D dcmb_94 rdhC; PAS/PAC sensor signal transduction histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D dcmb_233 rdhC; PAS/PAC sensor signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D dcmb_1378 rdhD; signal transduction response regulator, OmpR family K07668 vicR; two-component system, OmpR family, response regulator VicR
D dcmb_232 rdhD; signal transduction response regulator, OmpR family K02483 K02483; two-component system, OmpR family, response regulator
D dcmb_664 signal transduction histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D dcmb_443 PAS/PAC sensor signal transduction histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D dcmb_1210 signal transduction response regulator, LuxR family K07692 degU; two-component system, NarL family, response regulator DegU
D dcmb_444 signal transduction response regulator, LuxR family K11618 liaR; two-component system, NarL family, response regulator LiaR
D dcmb_149 PAS/PAC sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D dcmb_1152 PAS domain signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:dmd02035]
D dcmb_856 ATPase, PilT family K02669 pilT; twitching motility protein PilT
D dcmb_1114 ATPase, PilT family K02669 pilT; twitching motility protein PilT
D dcmb_1219 twitching mobility protein K02669 pilT; twitching motility protein PilT
D dcmb_1220 general secretion protein G K02650 pilA; type IV pilus assembly protein PilA
D dcmb_157 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA
D dcmb_1212 type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC
D dcmb_1221 comC; type IV prepilin leader peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D dcmb_1218 Tfp pilus assembly protein, ATPase K02662 pilM; type IV pilus assembly protein PilM
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:dmd04812]
D dcmb_1170 hypothetical protein K06990 MEMO1; MEMO1 family protein
D dcmb_641 ftsZ2; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D dcmb_356 ftsZ1; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D dcmb_642 ftsA2; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D dcmb_355 ftsA1; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D dcmb_597 Tubulin/FtsZ GTPase K22222 cetZ; tubulin-like protein CetZ
D dcmb_988 tubulin/FtsZ family protein K22222 cetZ; tubulin-like protein CetZ
D dcmb_1397 ParB-like nuclease domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:dmd04147]
D dcmb_601 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D dcmb_598 gap; NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D dcmb_712 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D dcmb_1469 peroxiredoxin-like protein K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D dcmb_1287 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D dcmb_1258 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D dcmb_398 IMP dehydrogenase family protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D dcmb_932 translation elongation factor Tu K02358 tuf; elongation factor Tu
D dcmb_466 HIT domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D dcmb_880 faa; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D dcmb_970 lcfB; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D dcmb_522 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D dcmb_505 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D dcmb_1120 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D dcmb_1119 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D dcmb_1008 glnA; glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_1392 putative glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D dcmb_607 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D dcmb_1276 purH; IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D dcmb_710 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:dmd02048]
D dcmb_100 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D dcmb_1405 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D dcmb_101 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
D dcmb_1404 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
D dcmb_1411 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D dcmb_95 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D dcmb_99 CRISPR-associated RecB family exonuclease Cas4b K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D dcmb_97 CRISPR-associated protein, Csd1 family K19117 csd1; CRISPR-associated protein Csd1
D dcmb_98 CRISPR-associated protein Cas7 K19118 csd2; CRISPR-associated protein Csd2
D dcmb_96 CRISPR-associated protein Cas5 K19119 cas5d; CRISPR-associated protein Cas5d
D dcmb_1410 CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA
D dcmb_1409 CRISPR-associated protein, Cse2 family K19046 casB; CRISPR system Cascade subunit CasB
D dcmb_1408 CRISPR-associated protein Cas7 K19124 casC; CRISPR system Cascade subunit CasC
D dcmb_1407 CRISPR-associated protein Cas5 K19125 casD; CRISPR system Cascade subunit CasD
D dcmb_1406 CRISPR-associated protein Cas6e K19126 casE; CRISPR system Cascade subunit CasE
D dcmb_260 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D dcmb_73 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5]
D dcmb_72 type III restriction-modification protein, methylation subunit K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D dcmb_102 hypothetical protein K18843 hicB; antitoxin HicB
D dcmb_641 ftsZ2; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D dcmb_356 ftsZ1; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D dcmb_1224 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D dcmb_253 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:dmd01504]
D dcmb_1305 DNA binding protein, excisionase family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D dcmb_1431 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:dmd03100]
D dcmb_60 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D dcmb_337 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D dcmb_1449 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D dcmb_690 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D dcmb_892 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D dcmb_1327 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D dcmb_715 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D dcmb_1471 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D dcmb_777 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D dcmb_984 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D dcmb_1300 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D dcmb_960 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D dcmb_776 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D dcmb_1511 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D dcmb_959 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D dcmb_1299 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D dcmb_820 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D dcmb_701 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D dcmb_893 tRNA-His K14226 tRNA-His; tRNA His
D dcmb_954 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D dcmb_775 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D dcmb_1298 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D dcmb_1302 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D dcmb_724 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D dcmb_1326 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D dcmb_841 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D dcmb_785 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D dcmb_434 tRNA-Met K14230 tRNA-Met; tRNA Met
D dcmb_703 tRNA-Met K14230 tRNA-Met; tRNA Met
D dcmb_1173 tRNA-Met K14230 tRNA-Met; tRNA Met
D dcmb_774 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D dcmb_729 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D dcmb_698 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D dcmb_1522 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D dcmb_581 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D dcmb_687 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D dcmb_688 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D dcmb_1246 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D dcmb_935 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D dcmb_396 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D dcmb_933 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D dcmb_1297 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D dcmb_934 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D dcmb_1328 tRNA-Val K14237 tRNA-Val; tRNA Val
D dcmb_177 tRNA-Val K14237 tRNA-Val; tRNA Val
D dcmb_1047 tRNA-Val K14237 tRNA-Val; tRNA Val
D dcmb_955 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D dcmb_53 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D dcmb_54 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D dcmb_881 iorA; indolepyruvate oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D dcmb_882 iorB; indolepyruvate oxidoreductase, beta subunit K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D dcmb_1103 msrA; peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D dcmb_1104 msrB; peptide methionine sulfoxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D dcmb_36 ferredoxin-NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D dcmb_335 protein-tyrosine-phosphatase family, putative arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D dcmb_166 protein-tyrosine-phosphatase family protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D dcmb_1171 radical SAM domain-containing protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D dcmb_1379 radical SAM domain-containing protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D dcmb_1380 radical SAM domain-containing protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D dcmb_628 radical SAM domain-containing protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D dcmb_111 radical SAM domain-containing protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D dcmb_112 radical SAM domain-containing protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D dcmb_244 radical SAM domain-containing protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D dcmb_1227 radical SAM domain-containing protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D dcmb_1462 ehrA; Ech-hydrogenase-related complex putative proton pumping subunit K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D dcmb_1460 ehrC; Ech-hydrogenase-related complex membrane subunit K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D dcmb_1459 ehrD; Ech-hydrogenase-related complex putative proton pumping subunit K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D dcmb_1080 acetyltransferase, GNAT family K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D dcmb_937 glycosyltransferase, group 1 protein K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D dcmb_214 glycosyltransferase, family 1 K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D dcmb_901 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D dcmb_1482 thiamin biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D dcmb_1122 DAK2 domain-containing protein K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D dcmb_1496 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D dcmb_868 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D dcmb_728 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D dcmb_1026 glycosyltransferase-polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D dcmb_219 putative deacetylase K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-]
D dcmb_1446 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3]
D dcmb_439 putative carbohydrate kinase, yjeF family K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D dcmb_885 NifU-domain-containing protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D dcmb_1355 putative flavodoxin K03839 fldA; flavodoxin I
D dcmb_827 echA; Energy converting NiFe hydrogenase Na+/H+ pump subunit EchA K14086 echA; ech hydrogenase subunit A
D dcmb_828 echB; Energy converting NiFe hydrogenase membrane subunit EchB K14087 echB; ech hydrogenase subunit B
D dcmb_829 echC; Energy converting NiFe hydrogenase electron transferring subunit EchC K14088 echC; ech hydrogenase subunit C
D dcmb_834 echE; Energy converting NiFe hydrogenase catalytic subunit EchE K14090 echE; ech hydrogenase subunit E
D dcmb_835 echF; Energy converting NiFe hydrogenase electron transferring subunit EchF K14091 echF; ech hydrogenase subunit F
C 99983 Lipid metabolism
D dcmb_1123 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D dcmb_1124 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D dcmb_433 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D dcmb_726 alanine racemase domain-containing protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
D dcmb_1031 acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D dcmb_35 hypothetical protein K09777 remA; extracellular matrix regulatory protein A
C 99974 Translation
D dcmb_999 metallo-beta-lactamase family protein, RNA-specific K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D dcmb_677 tig; cell division trigger factor K03545 tig; trigger factor
D dcmb_189 FdhE-like protein K02380 fdhE; FdhE protein
D dcmb_1360 smpB; ssrA-binding protein K03664 smpB; SsrA-binding protein
D dcmb_1292 hypC; [NiFe] hydrogenase maturation protein HypC K04653 hypC; hydrogenase expression/formation protein HypC
D dcmb_1293 hypD; [NiFe] hydrogenase maturation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D dcmb_1294 hypE; [NiFe] hydrogenase maturation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D dcmb_1480 AIR synthase domain-containing protein K04655 hypE; hydrogenase expression/formation protein HypE
D dcmb_1291 hypF; [NiFe] hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D dcmb_201 putative dithiol glutaredoxin K06191 nrdH; glutaredoxin-like protein NrdH
D dcmb_921 Mg chelatase-like protein K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D dcmb_259 hypothetical protein K07454 K07454; putative restriction endonuclease
D dcmb_1319 hypothetical protein, DUF2466 K03630 radC; DNA repair protein RadC
D dcmb_579 hypothetical protein, DUF2466 K03630 radC; DNA repair protein RadC
D dcmb_1498 DNA repair protein, HhH-GPD family K07457 K07457; endonuclease III related protein
D dcmb_750 hypothetical protein K07460 yraN; putative endonuclease
D dcmb_626 hypothetical protein K07465 K07465; putative RecB family exonuclease
D dcmb_686 Rossmann fold DNA uptake nucleotide-binding protein K04096 smf; DNA processing protein
D dcmb_548 dnaD; DNA replication protein, subunit DnaD K02086 dnaD; DNA replication protein
D dcmb_752 translin family protein K07477 K07477; translin
D dcmb_1167 AAA family ATPase K07478 ycaJ; putative ATPase
C 99979 Viral proteins
C 99998 Others
D dcmb_591 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D dcmb_33 putative phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
C 99978 Cell growth
D dcmb_671 acsF; acetyl-CoA synthase accessory protein AcsF K07321 cooC; CO dehydrogenase maturation factor
D dcmb_975 single-stranded nucleic acid binding protein K06346 jag; spoIIIJ-associated protein
D dcmb_1076 putative membrane protein K06384 spoIIM; stage II sporulation protein M
D dcmb_61 site-specific recombinase, resolvase family K06400 spoIVCA; site-specific DNA recombinase
D dcmb_78 recombinase zinc beta ribbon domain-containing protein K06400 spoIVCA; site-specific DNA recombinase
D dcmb_268 site-specific recombinase, resolvase family K06400 spoIVCA; site-specific DNA recombinase
C 99993 Cell motility
D dcmb_1106 TfoX domain-containing protein K07343 tfoX; DNA transformation protein and related proteins
C 99995 Signaling proteins
D dcmb_1157 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D dcmb_1175 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
C 99994 Others
D dcmb_165 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D dcmb_1477 divalent cation tolerance protein cutA K03926 cutA; periplasmic divalent cation tolerance protein
D dcmb_1109 putative peptide exporter K26996 sdpI; immunity protein, SdpI family
B
B 09194 Poorly characterized
C 99996 General function prediction only
D dcmb_195 colicin V production family protein K03558 cvpA; membrane protein required for colicin V production
D dcmb_902 ATP-dependent RNA helicase, DEAD-DEAH box family K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D dcmb_839 putative membrane protein, MMPL family K06994 K06994; putative drug exporter of the RND superfamily
D dcmb_338 putative patatin-like phospholipase K07001 K07001; NTE family protein
D dcmb_542 HAD superfamily hydrolase, subfamily IA K07025 K07025; putative hydrolase of the HAD superfamily
D dcmb_783 putative cysteine desulfurase activator SufB K09014 sufB; Fe-S cluster assembly protein SufB
D dcmb_759 phosphoribosyl transferase domain-containing protein K07100 K07100; putative phosphoribosyl transferase
D dcmb_846 phosphoribosyl transferase domain-containing protein K07100 K07100; putative phosphoribosyl transferase
D dcmb_1474 LemA family protein K03744 lemA; LemA protein
D dcmb_1027 putative membrane protein K03975 dedA; membrane-associated protein
D dcmb_886 hypothetical protein K08982 K08982; putative membrane protein
C 99997 Function unknown
D dcmb_221 HTH domain-containing protein, XRE family K06933 K06933; uncharacterized protein
D dcmb_1508 hypothetical protein K06934 K06934; uncharacterized protein
D dcmb_632 hypothetical protein K06940 K06940; uncharacterized protein
D dcmb_574 KH domain-containing protein K06960 K06960; uncharacterized protein
D dcmb_1524 putative metal-dependent peptidase K06973 K06973; uncharacterized protein
D dcmb_256 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein K07006 K07006; uncharacterized protein
D dcmb_523 hypothetical protein K07028 K07028; uncharacterized protein
D dcmb_1312 amidohydrolase 2 K07045 K07045; uncharacterized protein
D dcmb_940 putative TrkA-C domain-containing protein K07089 K07089; uncharacterized protein
D dcmb_617 putative membrane protein K07089 K07089; uncharacterized protein
D dcmb_850 hypothetical protein K07159 K07159; uncharacterized protein
D dcmb_534 hypothetical protein K07159 K07159; uncharacterized protein
D dcmb_374 putative zinc ribbon domain-containing protein K07164 K07164; uncharacterized protein
D dcmb_978 hypothetical protein K08998 K08998; uncharacterized protein
D dcmb_563 hypothetical protein K08999 K08999; uncharacterized protein
D dcmb_361 transamidase GatB domain-containing protein K09117 K09117; uncharacterized protein
D dcmb_438 hypothetical protein K09122 K09122; uncharacterized protein
D dcmb_1151 hypothetical protein K09131 K09131; uncharacterized protein
D dcmb_853 hypothetical protein K09740 K09740; uncharacterized protein
D dcmb_903 hypothetical protein K09764 K09764; uncharacterized protein
D dcmb_1055 hypothetical protein K09807 K09807; uncharacterized protein
D dcmb_1165 hypothetical protein K09946 K09946; uncharacterized protein
D dcmb_310 hypothetical protein K09968 K09968; uncharacterized protein
D dcmb_1473 hypothetical protein K09981 K09981; uncharacterized protein
D dcmb_1263 exonuclease K07502 yprB; uncharacterized protein
D dcmb_32 phosphate transport regulator K07220 K07220; uncharacterized protein
D dcmb_919 hypothetical protein K07742 ylxR; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 15, 2024