+E Transcription factors KO #

  Transcription Factors - Desulfoferula mesophila

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family C DeoR family C LacI family D FAK_16070 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D FAK_23440 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D FAK_10220 phosphonate metabolism transcriptional regulator PhnF K03710 K03710; GntR family transcriptional regulator D FAK_22020 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D FAK_29900 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D FAK_39580 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D FAK_06620 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D FAK_15040 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D FAK_17370 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D FAK_32750 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D FAK_38130 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D FAK_06290 hypothetical protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D FAK_08140 TetR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D FAK_38050 tetR; transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein C Lrp/AsnC family D FAK_29950 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA C LuxR family C MarR family C MerR family D FAK_01910 hypothetical protein K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR C Fur family D FAK_32200 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D FAK_21200 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D FAK_38210 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family D FAK_15890 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D FAK_18550 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D FAK_29630 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D FAK_31670 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D FAK_26670 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D FAK_27700 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D FAK_39670 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D FAK_26050 fnr; Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D FAK_40870 Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D FAK_14080 AsnC family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D FAK_27090 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor C XRE family C PadR family C Other families D FAK_36760 hypothetical protein K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D FAK_14550 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D FAK_19080 hypothetical protein K09720 nrpRI; HTH-type transcriptional regulator, global nitrogen regulator NrpRI D FAK_08330 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D FAK_06030 hyfR; hydrogenase K12146 hyfR; hydrogenase-4 transcriptional activator D FAK_22150 hydrogenase K12146 hyfR; hydrogenase-4 transcriptional activator D FAK_05340 hypothetical protein K15836 fhlA; formate hydrogenlyase transcriptional activator D FAK_09120 nifA-2; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein D FAK_09880 nifA-2; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein D FAK_11050 nifA; sigma-54-dependent Fis family transcriptional regulator K02584 nifA; Nif-specific regulatory protein D FAK_12680 ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D FAK_16250 hypothetical protein K02019 modE; molybdate transport system regulatory protein D FAK_01230 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D FAK_32090 transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D FAK_00980 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D FAK_26370 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D FAK_34930 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D FAK_19780 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D FAK_07740 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator D FAK_20450 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D FAK_29150 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D FAK_35740 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D FAK_25610 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D FAK_34320 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0