+E Ribosome biogenesis KO
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Ribosome Biogenesis - Desulfomicrobium orale
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D AXF15_05650 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C AXF15_06135 GTPase Era K03595 era; GTPase
C AXF15_06730 GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C AXF15_10825 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C AXF15_11815 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C AXF15_08350 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C AXF15_06395 hypothetical protein K03625 nusB; transcription antitermination protein NusB
C AXF15_01085 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D AXF15_11655 hypothetical protein K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D AXF15_04855 hypothetical protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D AXF15_08440 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D AXF15_07940 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D AXF15_03900 hypothetical protein K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D AXF15_00150 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D AXF15_02400 ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D AXF15_06500 tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D AXF15_06190 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D AXF15_11435 50S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D AXF15_12805 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D AXF15_03700 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D AXF15_04155 RNA methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D AXF15_05060 23S rRNA (adenine(2503)-C2)-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D AXF15_00175 hypothetical protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D AXF15_10770 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AXF15_11725 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AXF15_12220 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D AXF15_03905 hypothetical protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D AXF15_12015 hypothetical protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D AXF15_08470 hypothetical protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C AXF15_07970 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C AXF15_06005 ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C AXF15_06620 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C AXF15_10660 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C AXF15_10665 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C AXF15_03760 hypothetical protein K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C AXF15_05650 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C AXF15_04295 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
C AXF15_09020 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C AXF15_06665 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C AXF15_06135 GTPase Era K03595 era; GTPase
C AXF15_09070 ribosome biogenesis GTPase Der K03977 engA; GTPase
C AXF15_06730 GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C AXF15_10555 ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A
C AXF15_00850 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C AXF15_09760 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C AXF15_12155 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C AXF15_08330 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C AXF15_08355 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C AXF15_11905 ribosome-associated protein IOJAP K09710 ybeB; ribosome-associated protein
C AXF15_09595 metalloprotease K07042 ybeY; probable rRNA maturation factor
C AXF15_10560 hypothetical protein K09889 yjgA; ribosome-associated protein
C AXF15_04630 ribose ABC transporter permease K05808 hpf; ribosome hibernation promoting factor
C AXF15_12870 ychF; GTP-binding protein K06942 ychF; ribosome-binding ATPase
C AXF15_06330 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024