+D GENES KO
#
KEGG Orthology (KO) - Denitratisoma oestradiolicum
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:doe00010]
D DENOEST_3574 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DENOEST_3582 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DENOEST_3240 pfkA; ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D DENOEST_3241 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D DENOEST_0661 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DENOEST_3278 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DENOEST_0947 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DENOEST_1285 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_2543 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_3281 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_3280 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D DENOEST_0421 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DENOEST_2314 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DENOEST_3279 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DENOEST_1710 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D DENOEST_1402 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D DENOEST_1532 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DENOEST_1533 pdhB; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DENOEST_1535 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2139 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_1530 porA; Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D DENOEST_1529 porB; Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D DENOEST_1531 porC; Pyruvate synthase subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D DENOEST_3559 korA; 2-ketoglutarate: NADP oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D DENOEST_3560 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D DENOEST_1729 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DENOEST_2137 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DENOEST_1472 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DENOEST_2915 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D DENOEST_3164 pckG; Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:doe00020]
D DENOEST_0641 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D DENOEST_2142 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D DENOEST_2151 acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DENOEST_0600 idh; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D DENOEST_0602 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D DENOEST_2141 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D DENOEST_2140 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DENOEST_1535 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2139 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_3559 korA; 2-ketoglutarate: NADP oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D DENOEST_3560 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D DENOEST_1540 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DENOEST_1539 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DENOEST_2145 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DENOEST_2144 sdhB; succinate dehydrogenase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DENOEST_2147 Succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D DENOEST_2146 Succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D DENOEST_1470 Fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D DENOEST_2503 fumC; fumarate hydratase (fumarase C),aerobic Class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D DENOEST_2149 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DENOEST_1261 pyc; Pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D DENOEST_3164 pckG; Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D DENOEST_1532 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DENOEST_1533 pdhB; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DENOEST_1530 porA; Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D DENOEST_1529 porB; Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D DENOEST_1531 porC; Pyruvate synthase subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
C 00030 Pentose phosphate pathway [PATH:doe00030]
D DENOEST_3582 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DENOEST_0616 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D DENOEST_2723 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DENOEST_2724 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DENOEST_3282 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DENOEST_3290 rpiA; ribose 5-phosphate isomerase, constitutive K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D DENOEST_2915 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D DENOEST_3634 prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D DENOEST_0778 Quinoprotein glucose dehydrogenase K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D DENOEST_2692 conserved exported protein of unknown function K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D DENOEST_2539 conserved protein of unknown function K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
D DENOEST_3278 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DENOEST_0661 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DENOEST_3240 pfkA; ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D DENOEST_3241 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:doe00040]
D DENOEST_3043 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DENOEST_1009 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DENOEST_0616 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D DENOEST_3453 Alcohol dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D DENOEST_3073 ald; 5-(methylthio)ribulose-1-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:doe00051]
D DENOEST_3925 xanB; Mannose-6-phosphate isomerase / Mannose-1-phosphate guanylyl transferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D DENOEST_2915 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D DENOEST_3931 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D DENOEST_3073 ald; 5-(methylthio)ribulose-1-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D DENOEST_3240 pfkA; ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D DENOEST_3241 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D DENOEST_0661 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DENOEST_3453 Alcohol dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D DENOEST_3278 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DENOEST_0947 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DENOEST_3345 conserved protein of unknown function K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D DENOEST_3930 rmd; GDP-6-deoxy-D-mannose reductase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D DENOEST_0113 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:doe00052]
D DENOEST_1428 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DENOEST_1009 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DENOEST_2915 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D DENOEST_3574 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DENOEST_3240 pfkA; ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D DENOEST_3241 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00053 Ascorbate and aldarate metabolism [PATH:doe00053]
D DENOEST_3043 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DENOEST_0264 Uncharacterized 37.6 kDa protein in cld 5'region K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
C 00500 Starch and sucrose metabolism [PATH:doe00500]
D DENOEST_1009 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DENOEST_3340 rfbF; Glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D DENOEST_3578 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D DENOEST_3583 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D DENOEST_3577 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D DENOEST_0286 glgP; Glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D DENOEST_3581 conserved protein of unknown function K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D DENOEST_3580 Glycosyl hydrolase K22451 jgt; 4-alpha-glucanotransferase [EC:2.4.1.25]
D DENOEST_0837 otsB; trehalose-6-phosphate phosphatase, biosynthetic K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D DENOEST_2915 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D DENOEST_3574 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DENOEST_3582 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:doe00520]
D DENOEST_2188 nagZ; Beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D DENOEST_2619 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DENOEST_2329 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D DENOEST_2620 glmU; fused N-acetyl glucosamine-1-phosphate uridyltransferase; glucosamine-1-phosphate acetyl transferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D DENOEST_0349 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D DENOEST_2812 mupP; N-acetylmuramic acid 6-phosphate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D DENOEST_2846 amgK; N-acetylmuramate/N-acetylglucosamine kinase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D DENOEST_2847 murU; N-acetylmuramate alpha-1-phosphate uridylyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D DENOEST_0703 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DENOEST_3083 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DENOEST_1427 capL; Protein CapL K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D DENOEST_2063 yfbF; undecaprenyl phosphate-L-Ara4FN transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D DENOEST_2066 arnD; putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D DENOEST_3574 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DENOEST_2915 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D DENOEST_1009 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DENOEST_3043 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DENOEST_1428 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DENOEST_0264 Uncharacterized 37.6 kDa protein in cld 5'region K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D DENOEST_0113 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D DENOEST_3582 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DENOEST_3925 xanB; Mannose-6-phosphate isomerase / Mannose-1-phosphate guanylyl transferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D DENOEST_3931 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D DENOEST_3345 conserved protein of unknown function K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D DENOEST_3930 rmd; GDP-6-deoxy-D-mannose reductase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D DENOEST_1210 Aminotransferase (fragment) K13010 per; perosamine synthetase [EC:2.6.1.102]
D DENOEST_3340 rfbF; Glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D DENOEST_3341 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D DENOEST_2542 Aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D DENOEST_0336 ascD; CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D DENOEST_2982 Ferredoxin-NAD reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D DENOEST_3578 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:doe00620]
D DENOEST_1472 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DENOEST_1530 porA; Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D DENOEST_1529 porB; Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D DENOEST_1531 porC; Pyruvate synthase subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D DENOEST_3559 korA; 2-ketoglutarate: NADP oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D DENOEST_3560 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D DENOEST_1532 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DENOEST_1533 pdhB; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DENOEST_1535 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2139 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2137 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DENOEST_1729 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DENOEST_2276 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DENOEST_2275 Enoyl-CoA hydratase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DENOEST_3279 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DENOEST_2795 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DENOEST_3504 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DENOEST_3505 accC; biotin carboxylase (A subunit of acetyl-CoA carboxylase) K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DENOEST_0747 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DENOEST_3591 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D DENOEST_2441 FAD-linked oxidase K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4]
D DENOEST_0230 gloA; glyoxalase I, Ni-dependent K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D DENOEST_3525 VOC family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D DENOEST_1725 gloB; putative hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D DENOEST_3840 ycbL; putative metal-binding hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D DENOEST_0819 maeB; putative fused malic enzyme oxidoreductase; putative phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D DENOEST_3597 maeB; putative fused malic enzyme oxidoreductase; putative phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D DENOEST_1261 pyc; Pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D DENOEST_2149 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DENOEST_1470 Fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D DENOEST_2503 fumC; fumarate hydratase (fumarase C),aerobic Class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D DENOEST_0397 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D DENOEST_3164 pckG; Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D DENOEST_1710 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D DENOEST_1402 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D DENOEST_2502 mls; Malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1465 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:doe00630]
D DENOEST_0609 aceA; isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]
D DENOEST_1472 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DENOEST_2502 mls; Malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D DENOEST_2149 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DENOEST_0641 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D DENOEST_2142 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D DENOEST_2151 acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_0848 nodG; Nodulation protein G K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D DENOEST_1138 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D DENOEST_1139 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D DENOEST_1593 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D DENOEST_1594 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D DENOEST_3774 phaJ; (R)-specific enoyl-CoA hydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D DENOEST_1562 conserved protein of unknown function K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D DENOEST_3298 Acetyl-CoA carboxylase biotin carboxylase subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D DENOEST_3297 pccB; Propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D DENOEST_3295 yliK; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D DENOEST_0615 Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D DENOEST_2222 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D DENOEST_3782 Serine-pyruvate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D DENOEST_1171 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DENOEST_3564 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DENOEST_1509 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D DENOEST_1511 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DENOEST_1535 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2139 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_1510 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
D DENOEST_0657 glxR; 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D DENOEST_3168 purU; Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:doe00640]
D DENOEST_1472 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DENOEST_2527 prpE; propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D DENOEST_2276 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DENOEST_2275 Enoyl-CoA hydratase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DENOEST_1535 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2139 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_1530 porA; Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D DENOEST_1529 porB; Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D DENOEST_1531 porC; Pyruvate synthase subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D DENOEST_0759 mmgC; Acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D DENOEST_2528 yhfP; putative quinone oxidoreductase YhfP K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D DENOEST_1053 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3761 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3800 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_2795 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DENOEST_3504 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DENOEST_3505 accC; biotin carboxylase (A subunit of acetyl-CoA carboxylase) K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DENOEST_0747 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DENOEST_3298 Acetyl-CoA carboxylase biotin carboxylase subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D DENOEST_3297 pccB; Propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D DENOEST_1562 conserved protein of unknown function K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D DENOEST_3295 yliK; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D DENOEST_1539 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DENOEST_1540 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DENOEST_2151 acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
C 00650 Butanoate metabolism [PATH:doe00650]
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3159 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DENOEST_1053 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3761 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3800 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_0758 Crotonase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D DENOEST_0759 mmgC; Acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D DENOEST_3774 phaJ; (R)-specific enoyl-CoA hydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D DENOEST_1592 phaC; Poly(3-hydroxyalkanoate) polymerase subunit PhaC K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D DENOEST_2491 phaC; Poly(3-hydroxyalkanoate) polymerase subunit PhaC K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D DENOEST_0138 phaC; Poly(3-hydroxyalkanoate) polymerase subunit PhaC K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D DENOEST_0848 nodG; Nodulation protein G K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D DENOEST_1138 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D DENOEST_1139 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D DENOEST_1593 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D DENOEST_1594 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D DENOEST_1367 Glutaconate CoA-transferase subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12]
D DENOEST_2145 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DENOEST_2144 sdhB; succinate dehydrogenase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DENOEST_2147 Succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D DENOEST_2146 Succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D DENOEST_1088 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DENOEST_1530 porA; Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D DENOEST_1529 porB; Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D DENOEST_1531 porC; Pyruvate synthase subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D DENOEST_3559 korA; 2-ketoglutarate: NADP oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D DENOEST_3560 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D DENOEST_1600 mvaB; Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D DENOEST_2380 yngG; Hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D DENOEST_2423 Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D DENOEST_0843 atoD; acetoacetyl-CoA transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D DENOEST_1143 atoD; acetoacetyl-CoA transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D DENOEST_0844 atoA; acetoacetyl-CoA transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D DENOEST_1142 atoA; acetoacetyl-CoA transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D DENOEST_0757 acsA; Acetoacetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D DENOEST_1601 acsA; Acetoacetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D DENOEST_0640 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_0773 conserved protein of unknown function K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_1459 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_1460 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DENOEST_0772 (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
D DENOEST_2244 3-oxoacyl-[acyl-carrier protein] reductase K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
D DENOEST_2280 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
D DENOEST_2360 yxbG; Uncharacterized oxidoreductase YxbG K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
D DENOEST_2729 3-oxoacyl-[acyl-carrier protein] reductase K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
D DENOEST_3292 cpnA; Cyclopentanol dehydrogenase K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
D DENOEST_3450 fabG; 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
D DENOEST_3897 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:doe00660]
D DENOEST_0640 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_0773 conserved protein of unknown function K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_1459 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_1460 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DENOEST_1539 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DENOEST_1540 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DENOEST_0737 leuC; 3-isopropylmalate dehydratase (isomerase), subunit with LeuD K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_2415 leuC; 3-isopropylmalate dehydratase (isomerase), subunit with LeuD K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_2417 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_0738 leuD; 3-isopropylmalate isomerase (dehydratase), subunit with LeuC K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_2414 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_2416 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_0739 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:doe00562]
D DENOEST_1677 conserved exported protein of unknown function K21302 sapM; phosphatidylinositol-3-phosphatase [EC:3.1.3.64]
D DENOEST_1346 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DENOEST_0947 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:doe00190]
D DENOEST_0949 nuoA; NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D DENOEST_0950 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D DENOEST_0951 nuoC; NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D DENOEST_0952 nuoD; NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D DENOEST_0953 nqo; NADH-quinone oxidoreductase subunit 2 K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D DENOEST_0954 nuoF; NADH:ubiquinone oxidoreductase, chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D DENOEST_0955 NADH-quinone oxidoreductase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D DENOEST_0956 nuoH; NADH:ubiquinone oxidoreductase, membrane subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D DENOEST_0957 nuoI; NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D DENOEST_0958 nuoJ; NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D DENOEST_0959 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D DENOEST_0960 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D DENOEST_0961 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D DENOEST_0962 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D DENOEST_2145 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DENOEST_2144 sdhB; succinate dehydrogenase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DENOEST_2147 Succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D DENOEST_2146 Succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D DENOEST_1332 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D DENOEST_1333 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D DENOEST_1334 petC; Ammonia monooxygenase gamma subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D DENOEST_2986 ctaB; Protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141]
D DENOEST_3497 conserved membrane protein of unknown function K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D DENOEST_2981 putative cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D DENOEST_2987 Cytochrome C oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D DENOEST_3494 ctaD; Cytochrome c oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D DENOEST_2988 Cytochrome C oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D DENOEST_3495 Cytochrome c oxidase aa3, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D DENOEST_2990 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D DENOEST_2498 ccoN; Cbb3-type cytochrome c oxidase subunit CcoN1 K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D DENOEST_2497 K348 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D DENOEST_2496 protein of unknown function K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D DENOEST_0539 Cytochrome c class I K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D DENOEST_2495 ccoP; Cbb3-type cytochrome c oxidase subunit CcoP2 K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D DENOEST_0212 conserved exported protein of unknown function K08738 CYC; cytochrome c
D DENOEST_0224 Cytochrome c, class I K08738 CYC; cytochrome c
D DENOEST_0320 nirM; Cytochrome c-551 K08738 CYC; cytochrome c
D DENOEST_0384 Cytochrome c family protein K08738 CYC; cytochrome c
D DENOEST_0534 Class I cytochrome c K08738 CYC; cytochrome c
D DENOEST_1567 Cytochrome c, class I K08738 CYC; cytochrome c
D DENOEST_1987 nirM; Cytochrome c-551 K08738 CYC; cytochrome c
D DENOEST_1993 Cytochrome c K08738 CYC; cytochrome c
D DENOEST_3165 nirM; Cytochrome c-551 K08738 CYC; cytochrome c
D DENOEST_3834 atpA; membrane-bound ATP synthase, F1 sector, alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D DENOEST_3836 atpD; membrane-bound ATP synthase, F1 sector, beta-subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D DENOEST_3835 atpG; F1 sector of membrane-bound ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D DENOEST_3833 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D DENOEST_3837 atpC; F1 sector of membrane-bound ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D DENOEST_3830 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DENOEST_3832 atpF; F0 sector of membrane-bound ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D DENOEST_3831 atpE; F0 sector of membrane-bound ATP synthase, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D DENOEST_2666 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D DENOEST_1655 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:doe00710]
D DENOEST_3280 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D DENOEST_1285 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_2543 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_3281 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_3278 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DENOEST_0661 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DENOEST_2723 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DENOEST_2724 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DENOEST_3282 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DENOEST_3290 rpiA; ribose 5-phosphate isomerase, constitutive K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D DENOEST_0947 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DENOEST_0616 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D DENOEST_0397 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D DENOEST_1710 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D DENOEST_0819 maeB; putative fused malic enzyme oxidoreductase; putative phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D DENOEST_3597 maeB; putative fused malic enzyme oxidoreductase; putative phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D DENOEST_2149 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:doe00720]
D DENOEST_1530 porA; Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D DENOEST_1529 porB; Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D DENOEST_1531 porC; Pyruvate synthase subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D DENOEST_1402 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D DENOEST_1710 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D DENOEST_0397 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D DENOEST_1261 pyc; Pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D DENOEST_2149 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DENOEST_1470 Fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D DENOEST_2503 fumC; fumarate hydratase (fumarase C),aerobic Class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D DENOEST_2145 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DENOEST_2144 sdhB; succinate dehydrogenase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DENOEST_2147 Succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D DENOEST_2146 Succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D DENOEST_1540 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DENOEST_1539 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3559 korA; 2-ketoglutarate: NADP oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D DENOEST_3560 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D DENOEST_0600 idh; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D DENOEST_0602 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D DENOEST_2151 acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DENOEST_2795 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DENOEST_3504 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DENOEST_3505 accC; biotin carboxylase (A subunit of acetyl-CoA carboxylase) K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DENOEST_0747 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DENOEST_2465 D-arabinose 1-dehydrogenase, Zn-dependent alcohol dehydrogenase family K15020 K15020; acryloyl-coenzyme A reductase [EC:1.3.1.84]
D DENOEST_1562 conserved protein of unknown function K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D DENOEST_3295 yliK; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D DENOEST_1111 folD; Methylenetetrahydrofolate dehydrogenase / Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D DENOEST_1187 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D DENOEST_3412 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D DENOEST_2275 Enoyl-CoA hydratase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DENOEST_2276 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DENOEST_1472 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:doe00680]
D DENOEST_1729 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DENOEST_1171 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DENOEST_3564 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DENOEST_3782 Serine-pyruvate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D DENOEST_2314 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DENOEST_0397 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D DENOEST_2149 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DENOEST_3278 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DENOEST_0661 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DENOEST_3240 pfkA; ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D DENOEST_3241 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D DENOEST_1262 conserved protein of unknown function K00320 mer; 5,10-methylenetetrahydromethanopterin reductase [EC:1.5.98.2]
D DENOEST_2276 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DENOEST_2275 Enoyl-CoA hydratase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DENOEST_1472 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DENOEST_1530 porA; Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D DENOEST_1529 porB; Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D DENOEST_1531 porC; Pyruvate synthase subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D DENOEST_1402 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D DENOEST_0421 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DENOEST_2806 Phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DENOEST_2807 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DENOEST_3167 thrH; Phosphoserine phosphatase ThrH K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D DENOEST_1155 conserved protein of unknown function K16176 mtmB; methylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.248]
D DENOEST_1170 Methylamine---corrinoid protein Co-methyltransferase K16176 mtmB; methylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.248]
D DENOEST_1156 conserved protein of unknown function K16179 mtbC; dimethylamine corrinoid protein
D DENOEST_1169 conserved protein of unknown function K16179 mtbC; dimethylamine corrinoid protein
D DENOEST_1265 fbiC; FO synthase K11779 fbiC; FO synthase [EC:2.5.1.147 4.3.1.32]
D DENOEST_3709 fbiC; FO synthase K11779 fbiC; FO synthase [EC:2.5.1.147 4.3.1.32]
D DENOEST_1244 2-phospho-L-lactate guanylyltransferase (modular protein) K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105]
D DENOEST_3710 cofC; 2-phospho-L-lactate guanylyltransferase K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105]
D DENOEST_3711 cofD; 2-phospho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
D DENOEST_3712 cofE; Coenzyme F420:L-glutamate ligase K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
C 00910 Nitrogen metabolism [PATH:doe00910]
D DENOEST_0796 Antiporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D DENOEST_0797 Nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D DENOEST_0862 nasA; Nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D DENOEST_0859 Twin-arginine translocation pathway signal K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D DENOEST_0860 nasE; putative nitrate transport system permease K15577 nrtB; nitrate/nitrite transport system permease protein
D DENOEST_0861 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D DENOEST_0795 narG; nitrate reductase 1, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_0794 narY; nitrate reductase 2 (NRZ), beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_1980 clrB; Chlorate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_0792 narV; nitrate reductase 2 (NRZ), gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_3466 napA; nitrate reductase, periplasmic, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D DENOEST_3469 Periplasmic nitrate reductase, electron transfer subunit K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D DENOEST_2470 nasA; Nitrate reductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D DENOEST_0865 nasD; Nitrite reductase [NAD(P)H] K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4]
D DENOEST_0866 nasE; Assimilatory nitrite reductase [NAD(P)H] small subunit K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4]
D DENOEST_2955 nirS; Nitrite reductase K15864 nirS; nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
D DENOEST_3035 nirS; Nitrite reductase K15864 nirS; nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
D DENOEST_3261 norB; Nitric oxide reductase subunit B K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D DENOEST_3260 norC; Nitric oxide reductase subunit C K02305 norC; nitric oxide reductase subunit C
D DENOEST_3738 nosZ; Nitrous-oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D DENOEST_2490 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D DENOEST_1505 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D DENOEST_2622 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D DENOEST_2621 gltD; Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D DENOEST_3841 can; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D DENOEST_0613 conserved exported protein of unknown function K01674 cah; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:doe00920]
D DENOEST_3757 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DENOEST_3864 exported protein of unknown function K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DENOEST_3755 cysT; sulfate transport protein (ABC superfamily, membrane) K02046 cysU; sulfate/thiosulfate transport system permease protein
D DENOEST_3754 cysW; sulfate transport protein (ABC superfamily, membrane) K02047 cysW; sulfate/thiosulfate transport system permease protein
D DENOEST_3753 sulfate permease A protein, chromate resistance (ABC superfamily, atp_bind) (fragment) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DENOEST_2561 nodQ; Sulfate adenylyltransferase subunit 1 / Adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D DENOEST_2560 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DENOEST_2559 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D DENOEST_0686 cysH; Thioredoxin-dependent 5'-adenylylsulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D DENOEST_1352 Molybdopterin oxidoreductase K21307 soeA; sulfite dehydrogenase (quinone) subunit SoeA [EC:1.8.5.6]
D DENOEST_1248 conserved membrane protein of unknown function K21309 soeC; sulfite dehydrogenase (quinone) subunit SoeC
D DENOEST_1251 conserved membrane protein of unknown function K21309 soeC; sulfite dehydrogenase (quinone) subunit SoeC
D DENOEST_0688 Sulfite reductase K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D DENOEST_0292 exported protein of unknown function K17230 fccA; cytochrome subunit of sulfide dehydrogenase
D DENOEST_1541 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DENOEST_3346 conserved protein of unknown function K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DENOEST_2615 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DENOEST_3189 metXS; Homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D DENOEST_2184 mdeA; L-methionine gamma-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D DENOEST_0752 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D DENOEST_1979 Anaerobic dehydrogenase typically selenocysteine-containing K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D DENOEST_2397 dmdC; 3-methylmercaptopropionyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D DENOEST_3245 dmdC; 3-methylmercaptopropionyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D DENOEST_0611 dmdD; Methylthioacryloyl-CoA hydratase K20036 dmdD; (methylthio)acryloyl-CoA hydratase [EC:4.2.1.155]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:doe00061]
D DENOEST_2795 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DENOEST_3504 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DENOEST_3505 accC; biotin carboxylase (A subunit of acetyl-CoA carboxylase) K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DENOEST_0747 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DENOEST_2212 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D DENOEST_2214 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DENOEST_0841 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DENOEST_1145 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DENOEST_2215 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DENOEST_2211 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DENOEST_1173 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_1373 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2213 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2279 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2893 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2933 Short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3037 Short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3049 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3898 3-oxoacyl-ACP reductase (fragment) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_0903 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DENOEST_1669 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DENOEST_0733 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DENOEST_1389 putative O-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:doe00071]
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1053 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3761 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3800 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_0759 mmgC; Acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D DENOEST_2575 Acyl-CoA dehydrogenase-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D DENOEST_3764 fadE; acyl coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D DENOEST_1277 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D DENOEST_0733 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DENOEST_1389 putative O-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DENOEST_0186 rubB; Rubredoxin-NAD(+) reductase K05297 rubB; rubredoxin---NAD+ reductase [EC:1.18.1.1]
D DENOEST_1729 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DENOEST_2137 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:doe00074]
D DENOEST_2189 acpS; holo-[acyl-carrier-protein] synthase 1 K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D DENOEST_2212 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D DENOEST_2214 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:doe00121]
D DENOEST_3894 Acid--CoA ligase K15868 baiB; bile acid-coenzyme A ligase [EC:6.2.1.7]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:doe00561]
D DENOEST_2216 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D DENOEST_3484 plsY; 1-acyl glycerol-3-phosphate synthetase component K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DENOEST_0237 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D DENOEST_3510 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D DENOEST_1571 dgkA; Diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D DENOEST_1572 Glycosyl transferase family 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
C 00564 Glycerophospholipid metabolism [PATH:doe00564]
D DENOEST_0427 gpsA; glycerol-3-phosphate dehydrogenase (NAD+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D DENOEST_3484 plsY; 1-acyl glycerol-3-phosphate synthetase component K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DENOEST_0237 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D DENOEST_3510 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D DENOEST_1571 dgkA; Diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D DENOEST_0897 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D DENOEST_1463 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D DENOEST_1462 psd; Phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D DENOEST_1719 pgsA; phosphatidylglycerophosphate synthetase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D DENOEST_3794 pgpA; Phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D DENOEST_3879 ybhO; cardiolipin synthase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
D DENOEST_3016 Arylsulfatase K01130 atsA; arylsulfatase [EC:3.1.6.1]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:doe01040]
D DENOEST_0997 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D DENOEST_0693 Acyl-CoA thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:doe00230]
D DENOEST_0963 Zn-finger containing NTP pyrophosphohydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D DENOEST_2915 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D DENOEST_3634 prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D DENOEST_0751 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D DENOEST_2857 purD; phosphoribosylamine--glycine ligase (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase) K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D DENOEST_1497 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D DENOEST_0125 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D DENOEST_1581 purL; phosphoribosylformyl-glycineamide synthetase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D DENOEST_1487 purM; phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D DENOEST_1109 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D DENOEST_1110 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D DENOEST_0591 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D DENOEST_2886 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D DENOEST_2856 purH; bifunctional protein [Includes: phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DENOEST_1306 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D DENOEST_0718 ppnP; Pyrimidine/purine nucleoside phosphorylase K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D DENOEST_1642 yfiH; conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D DENOEST_1010 Phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D DENOEST_2026 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D DENOEST_2793 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DENOEST_3463 yggV; dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D DENOEST_1223 conserved protein of unknown function K00087 ygeS; xanthine dehydrogenase molybdenum-binding subunit [EC:1.17.1.4]
D DENOEST_2025 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D DENOEST_3473 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D DENOEST_2277 Vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DENOEST_2623 Deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1]
D DENOEST_P0102 Metal dependent phosphohydrolase K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D DENOEST_3475 spoT; bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D DENOEST_2322 ppx; Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D DENOEST_1645 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D DENOEST_0218 conserved membrane protein of unknown function K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D DENOEST_0387 Adenylate/guanylate cyclase domain-containing protein (fragment) K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D DENOEST_1411 Adenylate/guanylate cyclase with Chase sensor K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D DENOEST_1711 conserved protein of unknown function K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D DENOEST_3359 Adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D DENOEST_3783 Adenylate/guanylate cyclase domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D DENOEST_3929 Adenylate cyclase class-3/4/guanylyl cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D DENOEST_2778 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D DENOEST_1165 Adenosine kinase K00856 ADK; adenosine kinase [EC:2.7.1.20]
D DENOEST_3508 PfkB domain-containing protein K00856 ADK; adenosine kinase [EC:2.7.1.20]
D DENOEST_3239 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D DENOEST_0260 apaH; Bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D DENOEST_2561 nodQ; Sulfate adenylyltransferase subunit 1 / Adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D DENOEST_2560 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:doe00240]
D DENOEST_2336 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D DENOEST_2337 carA; carbamoyl-phosphate synthase, small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D DENOEST_0245 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D DENOEST_0246 pyrC; Dihydroorotase-like protein K01465 URA4; dihydroorotase [EC:3.5.2.3]
D DENOEST_3098 pyrC; dihydro-orotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D DENOEST_1663 pyrD; dihydro-orotate oxidase, FMN-linked K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D DENOEST_0578 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D DENOEST_0678 pyrF; Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D DENOEST_0894 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D DENOEST_2793 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DENOEST_3199 yhdE; putative septum formation protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D DENOEST_0470 conserved protein of unknown function K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D DENOEST_2317 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D DENOEST_1306 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D DENOEST_0718 ppnP; Pyrimidine/purine nucleoside phosphorylase K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D DENOEST_3588 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D DENOEST_2277 Vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DENOEST_P0102 Metal dependent phosphohydrolase K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D DENOEST_1734 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D DENOEST_1023 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D DENOEST_3573 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D DENOEST_0403 putative enzyme K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:doe00250]
D DENOEST_2204 nadB; L-aspartate oxidase (quinolinate synthetase B) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D DENOEST_1420 Asparagine synthase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D DENOEST_3215 Asparagine synthase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D DENOEST_2058 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DENOEST_3782 Serine-pyruvate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D DENOEST_0672 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D DENOEST_0716 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DENOEST_3067 argH; argininosuccinate lyase (Arginosuccinase) (ASAL) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DENOEST_2778 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D DENOEST_2886 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D DENOEST_0245 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D DENOEST_1088 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DENOEST_2622 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D DENOEST_2621 gltD; Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D DENOEST_1505 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D DENOEST_1024 conserved protein of unknown function K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DENOEST_2336 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D DENOEST_2337 carA; carbamoyl-phosphate synthase, small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D DENOEST_2619 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DENOEST_0751 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:doe00260]
D DENOEST_2505 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DENOEST_0740 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DENOEST_2057 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D DENOEST_3167 thrH; Phosphoserine phosphatase ThrH K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D DENOEST_1391 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D DENOEST_1171 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DENOEST_3564 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DENOEST_3782 Serine-pyruvate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D DENOEST_0421 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DENOEST_2806 Phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DENOEST_2807 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DENOEST_2406 Amine oxidase [flavin-containing] A K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D DENOEST_1509 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D DENOEST_1511 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DENOEST_1535 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2139 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_1510 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
D DENOEST_1463 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D DENOEST_3814 GMC oxidoreductase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D DENOEST_0220 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D DENOEST_0746 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D DENOEST_0745 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D DENOEST_3907 trpB; Tryptophan synthase beta chain 2 K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:doe00270]
D DENOEST_1541 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DENOEST_3346 conserved protein of unknown function K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DENOEST_2615 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DENOEST_0197 Aspartate aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DENOEST_1172 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DENOEST_3243 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DENOEST_1184 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D DENOEST_3406 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D DENOEST_0939 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D DENOEST_1473 conserved protein of unknown function K00797 speE; spermidine synthase [EC:2.5.1.16]
D DENOEST_1642 yfiH; conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D DENOEST_2809 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D DENOEST_1015 S-methyl-5'-thioinosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D DENOEST_3074 mtnA; Methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D DENOEST_1656 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D DENOEST_P0083 conserved protein of unknown function K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_P0179 conserved protein of unknown function K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_P0180 C-5 cytosine-specific DNA methylase (fragment) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_1185 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D DENOEST_3410 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D DENOEST_2505 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DENOEST_0740 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DENOEST_2057 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D DENOEST_3189 metXS; Homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D DENOEST_2184 mdeA; L-methionine gamma-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D DENOEST_2530 metY; homocysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D DENOEST_0752 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D DENOEST_2911 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DENOEST_0117 gshA; Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D DENOEST_2149 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DENOEST_3046 cysM; cysteine synthase B (O-acetylserine sulfhydrolase B) K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D DENOEST_2806 Phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DENOEST_2807 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:doe00280]
D DENOEST_2911 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DENOEST_1535 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2139 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_0759 mmgC; Acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D DENOEST_2575 Acyl-CoA dehydrogenase-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D DENOEST_1596 mmgC; Acyl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D DENOEST_1053 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3761 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3800 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3298 Acetyl-CoA carboxylase biotin carboxylase subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D DENOEST_3297 pccB; Propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D DENOEST_1562 conserved protein of unknown function K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D DENOEST_3295 yliK; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D DENOEST_1599 accA; Biotin carboxylase / Biotin carboxyl carrier protein K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D DENOEST_1597 Methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D DENOEST_1598 Enoyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D DENOEST_1600 mvaB; Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D DENOEST_2380 yngG; Hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D DENOEST_2423 Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D DENOEST_0843 atoD; acetoacetyl-CoA transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D DENOEST_1143 atoD; acetoacetyl-CoA transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D DENOEST_0844 atoA; acetoacetyl-CoA transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D DENOEST_1142 atoA; acetoacetyl-CoA transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D DENOEST_0757 acsA; Acetoacetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D DENOEST_1601 acsA; Acetoacetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:doe00290]
D DENOEST_0220 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D DENOEST_0737 leuC; 3-isopropylmalate dehydratase (isomerase), subunit with LeuD K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_2415 leuC; 3-isopropylmalate dehydratase (isomerase), subunit with LeuD K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_2417 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_0738 leuD; 3-isopropylmalate isomerase (dehydratase), subunit with LeuC K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_2414 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_2416 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DENOEST_0739 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D DENOEST_0640 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_0773 conserved protein of unknown function K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_1459 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_1460 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DENOEST_1461 ilvC; acetohydroxy acid isomeroreductase and 2-dehydropantoate 2-reductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D DENOEST_0314 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D DENOEST_2911 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DENOEST_2058 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DENOEST_1465 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:doe00300]
D DENOEST_2057 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D DENOEST_2505 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DENOEST_0740 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DENOEST_1315 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DENOEST_2338 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D DENOEST_2301 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D DENOEST_0714 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D DENOEST_2300 Succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D DENOEST_2303 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D DENOEST_3534 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D DENOEST_2634 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D DENOEST_3090 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DENOEST_3089 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:doe00310]
D DENOEST_0464 Aldehyde dehydrogenase K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D DENOEST_2140 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DENOEST_1535 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2139 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_1277 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D DENOEST_1053 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3761 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3800 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1088 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DENOEST_1089 CoA transferase K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-]
D DENOEST_0851 conserved protein of unknown function K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247]
D DENOEST_1136 conserved protein of unknown function K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247]
D DENOEST_3305 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00220 Arginine biosynthesis [PATH:doe00220]
D DENOEST_0715 argF; Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D DENOEST_0716 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DENOEST_3067 argH; argininosuccinate lyase (Arginosuccinase) (ASAL) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DENOEST_2336 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D DENOEST_2337 carA; carbamoyl-phosphate synthase, small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D DENOEST_1505 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D DENOEST_2058 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DENOEST_3288 argA; Amino-acid acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D DENOEST_0625 argJ; Glutamate N-acetyltransferase / Amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D DENOEST_3445 argB; Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D DENOEST_0345 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D DENOEST_0714 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D DENOEST_1264 conserved protein of unknown function K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:doe00330]
D DENOEST_2383 5-oxoprolinase K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D DENOEST_2439 5-oxoprolinase K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D DENOEST_2382 5-oxoprolinase (fragment) K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]
D DENOEST_2438 5-oxoprolinase K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]
D DENOEST_3587 Lysine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D DENOEST_0939 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D DENOEST_1473 conserved protein of unknown function K00797 speE; spermidine synthase [EC:2.5.1.16]
D DENOEST_2406 Amine oxidase [flavin-containing] A K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D DENOEST_2176 conserved protein of unknown function K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DENOEST_1025 conserved protein of unknown function K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D DENOEST_0251 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D DENOEST_1024 conserved protein of unknown function K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DENOEST_0471 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D DENOEST_3609 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D DENOEST_3305 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:doe00340]
D DENOEST_0704 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D DENOEST_2779 hisZ; ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D DENOEST_2606 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D DENOEST_2607 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D DENOEST_2605 hisF; imidazole glycerol phosphate synthase, catalytic subunit with HisH K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D DENOEST_2608 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D DENOEST_2609 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_2804 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_0705 hisD; bifunctional histidinal dehydrogenase and histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D DENOEST_2406 Amine oxidase [flavin-containing] A K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:doe00350]
D DENOEST_2609 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_2804 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_1656 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D DENOEST_2406 Amine oxidase [flavin-containing] A K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D DENOEST_1729 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DENOEST_2137 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DENOEST_1088 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DENOEST_1231 xylB; Aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
C 00360 Phenylalanine metabolism [PATH:doe00360]
D DENOEST_2406 Amine oxidase [flavin-containing] A K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D DENOEST_2645 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D DENOEST_2958 putative 1,2-epoxyphenylacetyl-CoA isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D DENOEST_3666 putative 1,2-epoxyphenylacetyl-CoA isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D DENOEST_3159 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DENOEST_1290 4Fe-4S ferredoxin K18362 padC; phenylacetyl-CoA:acceptor oxidoreductase 27-kDa subunit
D DENOEST_1289 Phenylacetyl-CoA:acceptor oxidoreductase K18363 padD; phenylacetyl-CoA:acceptor oxidoreductase 26-kDa subunit
D DENOEST_2609 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_2804 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_1656 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D DENOEST_1231 xylB; Aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D DENOEST_3305 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DENOEST_3811 catalase/hydroperoxidase HPI(I) (fragment) K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D DENOEST_2176 conserved protein of unknown function K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DENOEST_3808 Ferredoxin K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
C 00380 Tryptophan metabolism [PATH:doe00380]
D DENOEST_2140 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DENOEST_1535 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2139 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_1277 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D DENOEST_1053 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3761 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3800 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2406 Amine oxidase [flavin-containing] A K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D DENOEST_2176 conserved protein of unknown function K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DENOEST_3811 catalase/hydroperoxidase HPI(I) (fragment) K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:doe00400]
D DENOEST_2840 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DENOEST_2624 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D DENOEST_3503 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D DENOEST_0285 aroE; Shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D DENOEST_2625 aroK; shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71]
D DENOEST_3038 cmk; 3-phosphoshikimate 1-carboxyvinyltransferase / Cytidylate kinase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D DENOEST_0734 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D DENOEST_0614 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D DENOEST_3069 trpG; bifunctional protein:[Includes: para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase); anthranilate synthase component II] K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D DENOEST_3070 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D DENOEST_0744 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D DENOEST_3071 trpC; Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D DENOEST_0746 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D DENOEST_0745 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D DENOEST_3907 trpB; Tryptophan synthase beta chain 2 K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D DENOEST_2805 pheA; Chorismate mutase / Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D DENOEST_2803 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D DENOEST_2609 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_2804 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_1656 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:doe00410]
D DENOEST_0798 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D DENOEST_0799 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D DENOEST_1053 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3761 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3800 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_0759 mmgC; Acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
C 00430 Taurine and hypotaurine metabolism [PATH:doe00430]
D DENOEST_0672 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D DENOEST_2275 Enoyl-CoA hydratase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DENOEST_2276 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:doe00450]
D DENOEST_2184 mdeA; L-methionine gamma-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D DENOEST_0197 Aspartate aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DENOEST_1172 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DENOEST_3243 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DENOEST_2119 csd; putative cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D DENOEST_3805 sufS; selenocysteine lyase, PLP-dependent K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D DENOEST_2661 trxB; thioredoxin reductase 1 K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D DENOEST_2561 nodQ; Sulfate adenylyltransferase subunit 1 / Adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D DENOEST_2560 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DENOEST_0995 selD; Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D DENOEST_2901 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D DENOEST_3590 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D DENOEST_1171 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DENOEST_3564 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:doe00470]
D DENOEST_2923 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D DENOEST_3305 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DENOEST_3082 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DENOEST_1468 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D DENOEST_3087 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DENOEST_3534 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D DENOEST_2634 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:doe00480]
D DENOEST_0831 putative glutamate--cysteine ligase 2-1 K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D DENOEST_0117 gshA; Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D DENOEST_1452 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DENOEST_3571 conserved protein of unknown function K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DENOEST_1475 pepN; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D DENOEST_1304 gst; glutathionine S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DENOEST_2888 yibF; Uncharacterized GST-like protein YibF K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DENOEST_0600 idh; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D DENOEST_0602 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D DENOEST_2357 gpx; Hydroperoxy fatty acid reductase gpx1 K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D DENOEST_0939 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D DENOEST_1473 conserved protein of unknown function K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
D DENOEST_3347 protein of unknown function K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D DENOEST_3858 conserved protein of unknown function K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:doe00540]
D DENOEST_0904 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D DENOEST_3078 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D DENOEST_0902 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D DENOEST_2355 lpxH; UDP-2,3-diacylglucosamine pyrophosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D DENOEST_0905 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D DENOEST_3236 lpxK; lipid A 4'kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D DENOEST_2755 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D DENOEST_2316 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D DENOEST_2756 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D DENOEST_3238 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D DENOEST_0267 waaA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D DENOEST_3536 Lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D DENOEST_3537 Lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D DENOEST_3102 yraO; DnaA initiator-associating factor for replication initiation K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D DENOEST_3044 rfaE; D-beta-D-heptose 7-phosphate kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D DENOEST_0238 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D DENOEST_3104 D-beta-D-heptose 1-phosphate adenylyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D DENOEST_3045 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D DENOEST_0266 rfaC; Lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D DENOEST_2913 rfaF; ADP-heptose--LPS heptosyltransferase 2 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D DENOEST_3222 Heptosyltransferase-3 K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D DENOEST_3221 conserved protein of unknown function K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:doe00541]
D DENOEST_1009 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DENOEST_1428 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DENOEST_3043 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DENOEST_0264 Uncharacterized 37.6 kDa protein in cld 5'region K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D DENOEST_0711 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DENOEST_0710 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D DENOEST_0712 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DENOEST_3343 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DENOEST_0713 rmlD; dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D DENOEST_3340 rfbF; Glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D DENOEST_3341 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D DENOEST_2542 Aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D DENOEST_0336 ascD; CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D DENOEST_2982 Ferredoxin-NAD reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D DENOEST_3925 xanB; Mannose-6-phosphate isomerase / Mannose-1-phosphate guanylyl transferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D DENOEST_3931 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D DENOEST_3345 conserved protein of unknown function K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D DENOEST_3930 rmd; GDP-6-deoxy-D-mannose reductase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D DENOEST_1210 Aminotransferase (fragment) K13010 per; perosamine synthetase [EC:2.6.1.102]
D DENOEST_2620 glmU; fused N-acetyl glucosamine-1-phosphate uridyltransferase; glucosamine-1-phosphate acetyl transferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D DENOEST_1427 capL; Protein CapL K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:doe00550]
D DENOEST_0703 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DENOEST_3083 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DENOEST_3084 murC; UDP-N-acetylmuramate:L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D DENOEST_3087 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DENOEST_3090 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DENOEST_3082 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DENOEST_3089 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D DENOEST_0896 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D DENOEST_0281 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D DENOEST_3088 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DENOEST_3085 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D DENOEST_0564 mtgA; Biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DENOEST_2631 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DENOEST_0569 mrdA; transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D DENOEST_3091 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DENOEST_3304 dacC; D-alanyl-D-alanine carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DENOEST_0406 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:doe00552]
D DENOEST_0281 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D DENOEST_1572 Glycosyl transferase family 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:doe00543]
D DENOEST_1541 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DENOEST_3346 conserved protein of unknown function K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:doe00730]
D DENOEST_0612 thiC; hydroxymethylpyrimidine moiety synthesis in thiamin biosynthesis K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D DENOEST_0506 Bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D DENOEST_1543 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DENOEST_1544 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DENOEST_0971 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D DENOEST_3437 thiG; thiamine biosynthesis protein, thiazole moiety K03149 thiG; thiazole synthase [EC:2.8.1.10]
D DENOEST_0507 thiE; Thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D DENOEST_3796 thiL; thiamin-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D DENOEST_0724 rsgA; Small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D DENOEST_3239 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:doe00740]
D DENOEST_3799 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D DENOEST_3562 ribD; fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino) uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D DENOEST_3798 ribE; riboflavin synthase beta chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D DENOEST_0118 ribE; Riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D DENOEST_0869 ribF; bifunctional riboflavin kinase and FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D DENOEST_2358 Acid phosphatase K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D DENOEST_2511 bluB; 5,6-dimethylbenzimidazole synthase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79]
D DENOEST_0963 Zn-finger containing NTP pyrophosphohydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D DENOEST_0127 ubiX; Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:doe00750]
D DENOEST_2807 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DENOEST_2842 pdxA; 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D DENOEST_2190 pdxJ; Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D DENOEST_1391 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:doe00760]
D DENOEST_2204 nadB; L-aspartate oxidase (quinolinate synthetase B) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D DENOEST_3917 nadA; Quinolinate synthase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D DENOEST_2368 nadC; quinolinate phosphoribosyltransferase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D DENOEST_1306 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D DENOEST_3202 nadD; putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D DENOEST_2664 nadE; Glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D DENOEST_3793 ygaD; conserved hypothetical protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D DENOEST_2342 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D DENOEST_2831 pntA; pyridine nucleotide transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D DENOEST_2830 pntB; pyridine nucleotide transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D DENOEST_2379 Hydrolase, isochorismatase family protein K13995 nicF; maleamate amidohydrolase [EC:3.5.1.107]
D DENOEST_2426 Isochorismatase K13995 nicF; maleamate amidohydrolase [EC:3.5.1.107]
D DENOEST_1088 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:doe00770]
D DENOEST_0640 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_0773 conserved protein of unknown function K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_1459 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DENOEST_1460 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DENOEST_1461 ilvC; acetohydroxy acid isomeroreductase and 2-dehydropantoate 2-reductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D DENOEST_0314 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D DENOEST_0800 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D DENOEST_1213 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D DENOEST_1214 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D DENOEST_0799 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D DENOEST_3908 coaX; Type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D DENOEST_1022 dfp; fused 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D DENOEST_3640 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D DENOEST_3905 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D DENOEST_2189 acpS; holo-[acyl-carrier-protein] synthase 1 K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D DENOEST_2306 conserved protein of unknown function K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D DENOEST_2911 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DENOEST_0798 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:doe00780]
D DENOEST_0448 bioC; Malonyl-[acyl-carrier protein] O-methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D DENOEST_2250 bioC; Malonyl-[acyl-carrier protein] O-methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D DENOEST_2211 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DENOEST_1173 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_1373 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2213 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2279 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2893 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2933 Short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3037 Short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3049 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3898 3-oxoacyl-ACP reductase (fragment) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_0903 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DENOEST_1669 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DENOEST_2251 bioH; Pimeloyl-[acyl-carrier protein] methyl ester esterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D DENOEST_2252 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D DENOEST_2254 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D DENOEST_2245 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D DENOEST_0447 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D DENOEST_3909 birA; putative biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:doe00785]
D DENOEST_3307 lipB; lipoyl-protein ligase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D DENOEST_1203 lipA; lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D DENOEST_3308 lipA; lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D DENOEST_1535 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2139 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_1532 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DENOEST_1533 pdhB; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DENOEST_2141 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D DENOEST_2140 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DENOEST_1509 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D DENOEST_1511 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DENOEST_1510 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:doe00790]
D DENOEST_0818 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D DENOEST_0970 folE2; GTP cyclohydrolase FolE2 2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D DENOEST_0308 nudB; dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D DENOEST_3483 Dienelactone hydrolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D DENOEST_0802 folK; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D DENOEST_2330 folP; 7,8-dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D DENOEST_3586 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D DENOEST_0748 folC; bifunctional folylpolyglutamate synthase and dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D DENOEST_3799 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D DENOEST_0665 Aminobenzoate synthetase K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D DENOEST_1479 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D DENOEST_3283 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D DENOEST_3780 Pteridine reductase K03793 PTR1; pteridine reductase [EC:1.5.1.33]
D DENOEST_3433 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D DENOEST_3434 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D DENOEST_1004 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D DENOEST_1078 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D DENOEST_1996 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D DENOEST_1432 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D DENOEST_0986 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D DENOEST_3570 mogA; molybdochelatase MogA, involved in Moco biosynthesis K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D DENOEST_0455 moeA; Molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D DENOEST_1236 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D DENOEST_2120 conserved protein of unknown function K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D DENOEST_1077 mobA; Molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:doe00670]
D DENOEST_3586 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D DENOEST_1111 folD; Methylenetetrahydrofolate dehydrogenase / Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D DENOEST_1171 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DENOEST_3564 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DENOEST_1497 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D DENOEST_2856 purH; bifunctional protein [Includes: phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DENOEST_3702 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D DENOEST_1511 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DENOEST_1172 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DENOEST_3243 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DENOEST_3573 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D DENOEST_3168 purU; Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D DENOEST_1187 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D DENOEST_3412 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D DENOEST_0195 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:doe00860]
D DENOEST_0634 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DENOEST_0456 hemA; glutamyl tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D DENOEST_0508 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D DENOEST_3447 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D DENOEST_2863 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D DENOEST_2862 Uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D DENOEST_3624 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D DENOEST_2859 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D DENOEST_0787 hemN; Oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D DENOEST_0338 conserved membrane protein of unknown function K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D DENOEST_2344 hemH; Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D DENOEST_2861 conserved protein of unknown function K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D DENOEST_0964 L516 K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D DENOEST_2948 nirH; Protein NirH K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D DENOEST_2949 nirG; Protein NirG K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D DENOEST_2950 nirD; Protein NirD K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D DENOEST_2946 Cytochrome C oxidase Cbb3 K24867 nirN; dihydro-heme d1 dehydrogenase
D DENOEST_2986 ctaB; Protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141]
D DENOEST_2990 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D DENOEST_0853 conserved protein of unknown function K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D DENOEST_1191 cobB; Hydrogenobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D DENOEST_2512 cobB; Hydrogenobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D DENOEST_2837 cobO; Cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D DENOEST_1192 cobO; Cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D DENOEST_2513 cobO; Cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D DENOEST_1202 cobQ; Cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D DENOEST_3183 cobQ; Cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D DENOEST_0722 cobD; Cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D DENOEST_1162 cobD; Cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D DENOEST_2509 cobD; Cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D DENOEST_1160 cobC; Threonine-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC
D DENOEST_2510 cobC; Threonine-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC
D DENOEST_0584 cobP; Bifunctional adenosylcobalamin biosynthesis protein CobP K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D DENOEST_0585 cobS; Adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D DENOEST_0654 cobT; Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D DENOEST_1161 cobT; Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D DENOEST_0586 Phosphoglycerate/bisphosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D DENOEST_2474 bfr; bacterioferritin, iron storage and detoxification protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:doe00130]
D DENOEST_0366 ubiC; putative chorismate pyruvate-lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D DENOEST_0367 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D DENOEST_0382 protein of unknown function K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D DENOEST_0390 ubiD; 3-octaprenyl-4-hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D DENOEST_0127 ubiX; Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D DENOEST_3616 Ubiquinone biosynthesis protein UbiH K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D DENOEST_2811 ubiG; 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D DENOEST_2849 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase oxidoreductase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D DENOEST_3884 ubiE; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D DENOEST_0290 coq; 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D DENOEST_3419 Prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:doe00900]
D DENOEST_0971 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D DENOEST_0898 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D DENOEST_0812 ispD; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D DENOEST_3635 ispE; 4-diphosphocytidyl-2-C-methylerythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D DENOEST_0813 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D DENOEST_2789 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D DENOEST_0873 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_0127 ubiX; Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D DENOEST_0972 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D DENOEST_2618 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D DENOEST_0896 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D DENOEST_0725 Peptidase M48 K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:doe00906]
D DENOEST_1302 Phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation [PATH:doe00903]
D DENOEST_2764 putative acetyl esterase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
C 00907 Pinene, camphor and geraniol degradation [PATH:doe00907]
D DENOEST_1053 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3761 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3800 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_0410 Short-chain dehydrogenase/reductase SDR K13775 atuG; citronellol/citronellal dehydrogenase
D DENOEST_1600 mvaB; Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D DENOEST_2380 yngG; Hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D DENOEST_2423 Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D DENOEST_2723 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DENOEST_2724 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DENOEST_3282 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:doe00523]
D DENOEST_0711 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DENOEST_0710 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D DENOEST_0712 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DENOEST_3343 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DENOEST_0713 rmlD; dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D DENOEST_0710 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:doe00332]
D DENOEST_0471 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D DENOEST_3609 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:doe00261]
D DENOEST_2561 nodQ; Sulfate adenylyltransferase subunit 1 / Adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D DENOEST_2560 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DENOEST_2505 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DENOEST_0740 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DENOEST_1315 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DENOEST_2338 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:doe00521]
D DENOEST_3574 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DENOEST_2915 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D DENOEST_1346 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DENOEST_0711 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DENOEST_0710 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D DENOEST_0712 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DENOEST_3343 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DENOEST_0713 rmlD; dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D DENOEST_3574 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:doe00525]
D DENOEST_0711 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DENOEST_0710 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:doe00401]
D DENOEST_2803 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D DENOEST_2609 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_2804 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_1656 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D DENOEST_0614 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D DENOEST_3069 trpG; bifunctional protein:[Includes: para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase); anthranilate synthase component II] K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D DENOEST_2214 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DENOEST_1173 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_1373 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2213 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2279 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2893 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2933 Short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3037 Short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3049 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3898 3-oxoacyl-ACP reductase (fragment) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_1669 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D DENOEST_2212 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:doe00999]
D DENOEST_1184 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D DENOEST_3406 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D DENOEST_0285 aroE; Shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:doe00362]
D DENOEST_3600 pcaD; 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D DENOEST_3602 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D DENOEST_1549 fdx; [2Fe-2S] ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D DENOEST_1589 2-hydroxycyclohexane-1-carbonyl-CoA dehydrogenase K07535 badH; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-]
D DENOEST_2240 conserved protein of unknown function K07535 badH; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-]
D DENOEST_2556 putative oxidoreductase K07535 badH; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-]
D DENOEST_2730 conserved protein of unknown function K07535 badH; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-]
D DENOEST_1053 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3761 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3800 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_1277 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D DENOEST_3159 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:doe00627]
D DENOEST_2176 conserved protein of unknown function K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DENOEST_3591 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D DENOEST_0127 ubiX; Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D DENOEST_3914 glnA; glutamine synthetase K20712 glnA; 3-(hydroxyamino)phenol mutase [EC:5.4.4.3]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:doe00625]
D DENOEST_2870 dhmA; Haloalkane dehalogenase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
D DENOEST_2137 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DENOEST_1729 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:doe00361]
D DENOEST_2870 dhmA; Haloalkane dehalogenase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
C 00623 Toluene degradation [PATH:doe00623]
D DENOEST_2960 putative Succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsF K07544 bbsF; benzylsuccinate CoA-transferase BbsF subunit [EC:2.8.3.15]
D DENOEST_1231 xylB; Aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
C 00622 Xylene degradation [PATH:doe00622]
D DENOEST_1231 xylB; Aryl-alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
C 00633 Nitrotoluene degradation [PATH:doe00633]
D DENOEST_2281 nemA; N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D DENOEST_3881 nemA; N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D DENOEST_1530 porA; Pyruvate synthase subunit PorA K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D DENOEST_1529 porB; Pyruvate synthase subunit PorB K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D DENOEST_1531 porC; Pyruvate synthase subunit PorC K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:doe00643]
D DENOEST_2176 conserved protein of unknown function K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DENOEST_1367 Glutaconate CoA-transferase subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:doe00930]
D DENOEST_2764 putative acetyl esterase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
D DENOEST_1053 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3761 fadJ; Fatty acid oxidation complex subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DENOEST_3800 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:doe00626]
D DENOEST_2137 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DENOEST_1729 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation [PATH:doe00984]
D DENOEST_0776 3-ketosteroid-delta1-dehydrogenase (modular protein) K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
D DENOEST_1147 3-oxosteroid 1-dehydrogenase K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
D DENOEST_1377 3-oxosteroid 1-dehydrogenase K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
D DENOEST_3667 3-oxosteroid 1-dehydrogenase K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
D DENOEST_3674 FAD-binding dehydrogenase K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
D DENOEST_3105 conserved exported protein of unknown function K16048 hsaB; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase reductase component [EC:1.5.1.-]
D DENOEST_1378 fadD; 3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase K18687 fadD3; HIP---CoA ligase [EC:6.2.1.41]
D DENOEST_3109 3-beta-hydroxysteroid dehydrogenase K05296 E1.1.1.51; 3(or 17)beta-hydroxysteroid dehydrogenase [EC:1.1.1.51]
D DENOEST_3547 cpnA; Cyclopentanol dehydrogenase K05296 E1.1.1.51; 3(or 17)beta-hydroxysteroid dehydrogenase [EC:1.1.1.51]
D DENOEST_1376 ksi; Steroid Delta-isomerase K01822 E5.3.3.1; steroid Delta-isomerase [EC:5.3.3.1]
D DENOEST_2468 Ketosteroid isomerase-related protein K01822 E5.3.3.1; steroid Delta-isomerase [EC:5.3.3.1]
D DENOEST_3713 Ketosteroid isomerase K01822 E5.3.3.1; steroid Delta-isomerase [EC:5.3.3.1]
D DENOEST_3316 Succinate dehydrogenase/fumarate reductase flavoprotein subunit K16051 tesI; 3-oxo-5alpha-steroid 4-dehydrogenase [EC:1.3.99.5]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:doe03020]
D DENOEST_3144 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DENOEST_3143 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DENOEST_3112 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DENOEST_3474 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:doe03010]
D DENOEST_3039 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D DENOEST_0892 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D DENOEST_3131 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D DENOEST_3113 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D DENOEST_3120 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D DENOEST_0475 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D DENOEST_3141 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D DENOEST_3123 rpsH; 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D DENOEST_0344 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D DENOEST_3138 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D DENOEST_3114 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D DENOEST_3142 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D DENOEST_3115 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D DENOEST_3124 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D DENOEST_1525 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D DENOEST_2526 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D DENOEST_3128 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D DENOEST_0477 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D DENOEST_3133 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D DENOEST_2613 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D DENOEST_3488 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D DENOEST_3147 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D DENOEST_3134 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D DENOEST_3137 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D DENOEST_3136 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D DENOEST_3125 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D DENOEST_3122 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D DENOEST_3145 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D DENOEST_0478 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D DENOEST_3146 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D DENOEST_3148 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D DENOEST_0343 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D DENOEST_3127 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D DENOEST_3118 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D DENOEST_3130 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D DENOEST_3111 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D DENOEST_3121 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D DENOEST_2523 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D DENOEST_2994 rplT; 50S ribosomal protein L20, also posttranslational autoregulator K02887 RP-L20; large subunit ribosomal protein L20
D DENOEST_0474 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D DENOEST_3132 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D DENOEST_3135 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D DENOEST_3126 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D DENOEST_3633 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D DENOEST_0473 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D DENOEST_1019 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D DENOEST_3129 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D DENOEST_3119 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D DENOEST_0728 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D DENOEST_2217 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D DENOEST_1018 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D DENOEST_3821 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D DENOEST_2993 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D DENOEST_RRNA6 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:doe00970]
D DENOEST_TRNA33 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA12 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA35 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA38 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA14 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA20 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DENOEST_TRNA44 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DENOEST_TRNA11 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DENOEST_TRNA50 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DENOEST_TRNA42 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DENOEST_TRNA6 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DENOEST_TRNA9 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D DENOEST_TRNA28 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DENOEST_TRNA13 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DENOEST_TRNA15 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DENOEST_TRNA8 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DENOEST_TRNA23 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DENOEST_TRNA30 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DENOEST_TRNA43 tRNA-His K14226 tRNA-His; tRNA His
D DENOEST_TRNA1 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DENOEST_TRNA34 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DENOEST_TRNA37 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DENOEST_TRNA36 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DENOEST_TRNA48 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DENOEST_TRNA4 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DENOEST_TRNA46 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DENOEST_TRNA7 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DENOEST_TRNA25 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DENOEST_TRNA26 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DENOEST_TRNA19 tRNA-Met K14230 tRNA-Met; tRNA Met
D DENOEST_TRNA24 tRNA-Met K14230 tRNA-Met; tRNA Met
D DENOEST_TRNA27 tRNA-Met K14230 tRNA-Met; tRNA Met
D DENOEST_TRNA40 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D DENOEST_TRNA49 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DENOEST_TRNA18 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DENOEST_TRNA22 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DENOEST_TRNA17 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DENOEST_TRNA45 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DENOEST_TRNA41 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DENOEST_TRNA47 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DENOEST_TRNA3 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DENOEST_TRNA5 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DENOEST_TRNA31 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DENOEST_TRNA32 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D DENOEST_TRNA29 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D DENOEST_TRNA39 tRNA-Val K14237 tRNA-Val; tRNA Val
D DENOEST_TRNA16 tRNA-Val K14237 tRNA-Val; tRNA Val
D DENOEST_TRNA10 tRNA-Val K14237 tRNA-Val; tRNA Val
D DENOEST_TRNA21 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D DENOEST_0634 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DENOEST_0575 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D DENOEST_0576 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D DENOEST_0574 gatC; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D DENOEST_0679 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D DENOEST_2919 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DENOEST_0303 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DENOEST_0241 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DENOEST_0239 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DENOEST_2991 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DENOEST_1106 serS; seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DENOEST_2901 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D DENOEST_2350 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DENOEST_3590 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DENOEST_3702 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D DENOEST_1448 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DENOEST_3605 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DENOEST_0870 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DENOEST_0637 lysU; lysine tRNA synthetase, inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D DENOEST_0153 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DENOEST_0295 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DENOEST_2788 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DENOEST_2995 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DENOEST_2996 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DENOEST_0351 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DENOEST_1516 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:doe03060]
D DENOEST_3117 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D DENOEST_3150 secE; Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D DENOEST_0948 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D DENOEST_2881 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D DENOEST_2882 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D DENOEST_2879 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D DENOEST_3823 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DENOEST_3075 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DENOEST_0425 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D DENOEST_0297 ffh; 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DENOEST_MISCRNA10 Bacteria_small_SRP K01983 ffs; SRP RNA
D DENOEST_3644 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D DENOEST_2601 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D DENOEST_2600 Sec-independent protein translocase protein TatB (fragment) K03117 tatB; sec-independent protein translocase protein TatB
D DENOEST_2599 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
D DENOEST_2195 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D DENOEST_0871 lspA; prolipoprotein signal peptidase (signal peptidase II) K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:doe04122]
D DENOEST_1543 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DENOEST_1544 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DENOEST_1433 tusA; Sulfur carrier protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D DENOEST_2890 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D DENOEST_0986 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D DENOEST_1078 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D DENOEST_1996 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D DENOEST_0985 moaD; molybdopterin synthase, small subunit K03636 moaD; sulfur-carrier protein
D DENOEST_0417 thiF; Sulfur carrier protein ThiS adenylyltransferase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D DENOEST_1432 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D DENOEST_3570 mogA; molybdochelatase MogA, involved in Moco biosynthesis K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D DENOEST_3438 thiS; Thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:doe03018]
D DENOEST_0294 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D DENOEST_2226 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D DENOEST_2314 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DENOEST_1526 pnp; polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D DENOEST_0469 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D DENOEST_0607 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D DENOEST_2829 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D DENOEST_0805 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DENOEST_0671 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DENOEST_2356 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D DENOEST_0729 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D DENOEST_2347 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK
D DENOEST_3765 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DENOEST_2784 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D DENOEST_1655 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D DENOEST_0803 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:doe03030]
D DENOEST_1350 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DENOEST_3259 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DENOEST_3595 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DENOEST_1328 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DENOEST_1733 holB; DNA-directed DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DENOEST_3608 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DENOEST_1451 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DENOEST_3819 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DENOEST_2517 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D DENOEST_3490 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D DENOEST_P0098 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D DENOEST_1853 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_2019 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_3613 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0081 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0177 protein of unknown function K03111 ssb; single-strand DNA-binding protein
D DENOEST_0938 Ribonuclease HI (fragment) K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D DENOEST_0906 rnhB; ribonuclease HII, degrades RNA of DNA-RNA hybrids K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D DENOEST_3207 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DENOEST_1007 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:doe03410]
D DENOEST_1687 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D DENOEST_0126 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D DENOEST_3638 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D DENOEST_0990 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D DENOEST_1363 putative phage SPO1 DNA polymerase-related protein, uracil-DNA glycosylase family K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D DENOEST_1717 Type-5 uracil-DNA glycosylase (modular protein) K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D DENOEST_0579 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DENOEST_0587 xth; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DENOEST_3207 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DENOEST_2232 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DENOEST_1007 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:doe03420]
D DENOEST_0912 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D DENOEST_0190 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D DENOEST_2132 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D DENOEST_1718 uvrC; excinuclease UvrABC, endonuclease subunit K03703 uvrC; excinuclease ABC subunit C
D DENOEST_1942 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DENOEST_2021 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DENOEST_3603 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DENOEST_3207 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DENOEST_1007 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:doe03430]
D DENOEST_2134 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D DENOEST_1490 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D DENOEST_1942 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DENOEST_2021 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DENOEST_3603 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DENOEST_3230 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D DENOEST_0973 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DENOEST_2232 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DENOEST_1853 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_2019 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_3613 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0081 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0177 protein of unknown function K03111 ssb; single-strand DNA-binding protein
D DENOEST_3595 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DENOEST_3819 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DENOEST_1328 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DENOEST_3608 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DENOEST_1733 holB; DNA-directed DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DENOEST_1350 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DENOEST_3259 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DENOEST_1451 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DENOEST_1007 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:doe03440]
D DENOEST_2232 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DENOEST_1853 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_2019 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_3613 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0081 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0177 protein of unknown function K03111 ssb; single-strand DNA-binding protein
D DENOEST_2191 recO; gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D DENOEST_1330 recR; gap repair protein K06187 recR; recombination protein RecR
D DENOEST_3792 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D DENOEST_3207 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DENOEST_3420 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
D DENOEST_3422 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D DENOEST_3417 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D DENOEST_0365 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D DENOEST_1674 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D DENOEST_1673 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D DENOEST_1675 recD; exonuclease V (RecBCD complex), alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D DENOEST_3595 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DENOEST_3819 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DENOEST_1328 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DENOEST_3608 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DENOEST_1733 holB; DNA-directed DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DENOEST_1350 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DENOEST_3259 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DENOEST_1451 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DENOEST_3622 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D DENOEST_0476 Primosomal replication protein N (fragment) K02686 priB; primosomal replication protein N
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
D DENOEST_3347 protein of unknown function K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D DENOEST_3858 conserved protein of unknown function K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:doe02010]
D DENOEST_3757 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DENOEST_3864 exported protein of unknown function K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DENOEST_3755 cysT; sulfate transport protein (ABC superfamily, membrane) K02046 cysU; sulfate/thiosulfate transport system permease protein
D DENOEST_3754 cysW; sulfate transport protein (ABC superfamily, membrane) K02047 cysW; sulfate/thiosulfate transport system permease protein
D DENOEST_3753 sulfate permease A protein, chromate resistance (ABC superfamily, atp_bind) (fragment) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DENOEST_0859 Twin-arginine translocation pathway signal K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D DENOEST_0860 nasE; putative nitrate transport system permease K15577 nrtB; nitrate/nitrite transport system permease protein
D DENOEST_0861 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D DENOEST_3161 modA; Molybdate-binding protein ModA K02020 modA; molybdate transport system substrate-binding protein
D DENOEST_3162 modB; Molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein
D DENOEST_3163 modC; molybdate transporter subunit; ATP-binding component of ABC superfamily K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D DENOEST_1668 futA; Iron uptake protein A1 K02012 afuA; iron(III) transport system substrate-binding protein
D DENOEST_1667 Iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D DENOEST_1666 potA; Spermidine/putrescine import ATP-binding protein PotA 2 K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DENOEST_0164 Putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D DENOEST_0163 potC; polyamine transporter subunit; membrane component of ABC superfamily K11070 potC; spermidine/putrescine transport system permease protein
D DENOEST_0162 potB; polyamine transporter subunit; membrane component of ABC superfamily K11071 potB; spermidine/putrescine transport system permease protein
D DENOEST_0161 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D DENOEST_0698 conserved exported protein of unknown function K07323 mlaC; phospholipid transport system substrate-binding protein
D DENOEST_0696 yrbD; toluene transporter subunit: membrane component of ABC superfamily K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D DENOEST_2319 conserved protein of unknown function K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D DENOEST_0695 yrbE; toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D DENOEST_2321 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D DENOEST_0699 conserved protein of unknown function K07122 mlaB; phospholipid transport system transporter-binding protein
D DENOEST_0694 yrbF; toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DENOEST_2234 yrbF; toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DENOEST_2320 ABC transporter-like protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DENOEST_1574 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein
D DENOEST_1575 pstC; phosphate transporter subunit; membrane component of ABC superfamily K02037 pstC; phosphate transport system permease protein
D DENOEST_1576 pstA; phosphate transporter subunit; membrane component of ABC superfamily K02038 pstA; phosphate transport system permease protein
D DENOEST_1577 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D DENOEST_0176 Phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D DENOEST_0178 phnE; Phosphate-import permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D DENOEST_0177 phnC; Phosphonates import ATP-binding protein PhnC K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D DENOEST_0322 Branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DENOEST_0323 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein
D DENOEST_0324 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein
D DENOEST_0325 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DENOEST_0326 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DENOEST_3932 Transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D DENOEST_3933 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D DENOEST_3773 nodJ; Nodulation protein J K09694 nodJ; lipooligosaccharide transport system permease protein
D DENOEST_0173 nodI; Nod factor export ATP-binding protein I K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D DENOEST_2230 lolC; Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D DENOEST_2229 lolD; outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D DENOEST_0560 ccmD; Heme exporter protein D K02196 ccmD; heme exporter protein D
D DENOEST_0559 ccmC; heme exporter subunit; membrane component of ABC superfamily K02195 ccmC; heme exporter protein C
D DENOEST_0526 ccmB; heme exporter subunit; membrane component of ABC superfamily K02194 ccmB; heme exporter protein B
D DENOEST_0527 ccmA; heme exporter subunit; ATP-binding component of ABC superfamily K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D DENOEST_1453 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D DENOEST_1454 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D DENOEST_3790 lptB; putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D DENOEST_3742 nosY; putative ABC transporter permease protein NosY K19341 nosY; Cu-processing system permease protein
D DENOEST_3741 nosF; putative ABC transporter ATP-binding protein NosF K19340 nosF; Cu-processing system ATP-binding protein
D DENOEST_0341 Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DENOEST_0340 ftsE; transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D DENOEST_3220 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D DENOEST_0692 atm; ATM1-type heavy metal exporter K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D DENOEST_3922 aprD; Alkaline protease secretion ATP-binding protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
C 02060 Phosphotransferase system (PTS) [PATH:doe02060]
D DENOEST_3190 phbI; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D DENOEST_3191 phbH; Phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D DENOEST_0113 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D DENOEST_3787 ptsN; Phosphotransferase enzyme IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:doe03070]
D DENOEST_0269 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D DENOEST_3890 Protein CyaE K12340 tolC; outer membrane protein
D DENOEST_3924 Channel protein TolC K12340 tolC; outer membrane protein
D DENOEST_2593 General secretion pathway protein GspD K02453 gspD; general secretion pathway protein D
D DENOEST_3683 Type II secretion system protein GspD K02453 gspD; general secretion pathway protein D
D DENOEST_3682 exported protein of unknown function K02452 gspC; general secretion pathway protein C
D DENOEST_2587 General secretion pathway protein F K02455 gspF; general secretion pathway protein F
D DENOEST_3685 xcpS; Type II secretion system protein F K02455 gspF; general secretion pathway protein F
D DENOEST_2586 gspG; pseudopilin, cryptic, general secretion pathway K02456 gspG; general secretion pathway protein G
D DENOEST_2594 General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D DENOEST_2595 xcpT; PilD-dependent protein PddA K02456 gspG; general secretion pathway protein G
D DENOEST_3686 gspG; pseudopilin, cryptic, general secretion pathway K02456 gspG; general secretion pathway protein G
D DENOEST_3687 putative Type II secretion system protein GspH K02457 gspH; general secretion pathway protein H
D DENOEST_3688 gspI; General secretion pathway protein I K02458 gspI; general secretion pathway protein I
D DENOEST_3689 putative Type II secretion system protein J K02459 gspJ; general secretion pathway protein J
D DENOEST_3690 putative Type II secretion system protein K K02460 gspK; general secretion pathway protein K
D DENOEST_3691 putative Type II secretion system protein GspL K02461 gspL; general secretion pathway protein L
D DENOEST_3692 putative Type II secretion system protein M (GspM) K02462 gspM; general secretion pathway protein M
D DENOEST_1349 Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D DENOEST_2588 xcpR; Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D DENOEST_3684 gspE; general secretory pathway component, cryptic K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D DENOEST_2881 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D DENOEST_2882 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D DENOEST_3150 secE; Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D DENOEST_0948 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D DENOEST_3117 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D DENOEST_2879 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D DENOEST_3823 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DENOEST_3075 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DENOEST_3644 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D DENOEST_0425 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D DENOEST_0297 ffh; 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DENOEST_2601 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D DENOEST_2600 Sec-independent protein translocase protein TatB (fragment) K03117 tatB; sec-independent protein translocase protein TatB
D DENOEST_2599 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:doe02020]
D DENOEST_1580 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D DENOEST_1579 phoB; DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D DENOEST_1574 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein
D DENOEST_2358 Acid phosphatase K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D DENOEST_1395 conserved exported protein of unknown function K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D DENOEST_1396 ompR; two-component response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D DENOEST_2199 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107]
D DENOEST_3889 RND transporter K07799 mdtA; membrane fusion protein, multidrug efflux system
D DENOEST_1696 pcoS; putative sensor protein PcoS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DENOEST_1886 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DENOEST_1697 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D DENOEST_1885 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D DENOEST_1699 RND transporter K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF
D DENOEST_1798 Copper-binding protein (fragment) K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF
D DENOEST_1875 Cu and Ag efflux protein CusF (fragment) K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF
D DENOEST_1878 conserved exported protein of unknown function K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF
D DENOEST_1701 conserved protein of unknown function K07798 cusB; membrane fusion protein, copper/silver efflux system
D DENOEST_1873 Efflux transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D DENOEST_1702 cusA; copper/silver efflux system, membrane component K07787 cusA; copper/silver efflux system protein
D DENOEST_1872 cusA; copper/silver efflux system, membrane component K07787 cusA; copper/silver efflux system protein
D DENOEST_3539 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D DENOEST_3538 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D DENOEST_3348 putative Flagellin K02406 fliC; flagellin
D DENOEST_1075 Flagellin K02406 fliC; flagellin
D DENOEST_3350 putative Flagellin K02406 fliC; flagellin
D DENOEST_3394 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D DENOEST_3393 motC; Flagellar motor protein K02556 motA; chemotaxis protein MotA
D DENOEST_3405 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA
D DENOEST_0815 Histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D DENOEST_0816 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D DENOEST_2990 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D DENOEST_3820 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D DENOEST_2150 Aldolase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D DENOEST_3066 protein of unknown function K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D DENOEST_3065 algR; Positive alginate biosynthesis regulatory protein K08083 algR; two-component system, LytTR family, response regulator AlgR
D DENOEST_0791 GAF:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase, dimerization and phosphoacceptor region K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D DENOEST_0790 narL; DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D DENOEST_0795 narG; nitrate reductase 1, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_0794 narY; nitrate reductase 2 (NRZ), beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_1980 clrB; Chlorate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_0792 narV; nitrate reductase 2 (NRZ), gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_0793 narJ; Chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D DENOEST_0706 Histidine kinase (fragment) K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D DENOEST_0708 DNA-binding response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D DENOEST_0881 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D DENOEST_P0053 DNA-binding response regulator (modular protein) K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D DENOEST_P0144 protein of unknown function K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D DENOEST_2327 glnD; [Protein-PII] uridylyltransferase / [Protein-PII]-UMP uridylyl-removing enzyme K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D DENOEST_1893 Transcriptional regulator K04751 glnB; nitrogen regulatory protein P-II 1
D DENOEST_2663 glnK; regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase) K04751 glnB; nitrogen regulatory protein P-II 1
D DENOEST_3912 PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D DENOEST_3911 glnG; fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator; sigma54 interaction protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D DENOEST_3626 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D DENOEST_3625 Transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D DENOEST_0514 atoC; Regulatory protein AtoC K07714 atoC; two-component system, NtrC family, response regulator AtoC
D DENOEST_1990 atoC; fused response regulator of ato opeon, in two-component system with AtoS: response regulator; sigma54 interaction protein K07714 atoC; two-component system, NtrC family, response regulator AtoC
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3251 conserved membrane protein of unknown function K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D DENOEST_3250 pilR; Type 4 fimbriae expression regulatory protein PilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D DENOEST_3789 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D DENOEST_1416 conserved protein of unknown function K02650 pilA; type IV pilus assembly protein PilA
D DENOEST_1068 conserved protein of unknown function K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D DENOEST_1066 yfhA; putative DNA-binding response regulator in two-component system K07715 glrR; two-component system, NtrC family, response regulator GlrR
D DENOEST_2267 cheR; Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D DENOEST_2284 conserved protein of unknown function K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D DENOEST_1224 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_0523 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_0537 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_0980 Chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_1560 putative Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_1662 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2261 Chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2264 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2266 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2521 putative Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2821 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3271 conserved exported protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3492 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3584 conserved exported protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3737 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3750 aer; Aerotaxis receptor K03776 aer; aerotaxis receptor
D DENOEST_2253 conserved protein of unknown function K03776 aer; aerotaxis receptor
D DENOEST_2265 Purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D DENOEST_2283 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D DENOEST_2285 Chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D DENOEST_2289 Hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_2263 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_3399 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_2260 Two-component system sensor histidine kinase/response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DENOEST_3401 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DENOEST_2268 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DENOEST_2291 cheB; Chemotaxis response regulator protein-glutamate methylesterase 4 K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DENOEST_3402 cheV; Chemotaxis protein CheV-like K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DENOEST_3403 Fused signal transduction protein/response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DENOEST_2312 cph1; Phytochrome-like protein cph1 K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D DENOEST_2295 PAS domain-containing sensor histidine kinase K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D DENOEST_2294 dctR; C4-dicarboxylate transport transcriptional regulatory protein DctR K11712 dctR; two-component system, LuxR family, response regulator DctR
D DENOEST_2296 dctP; C4-dicarboxylate-binding periplasmic protein DctP K11688 dctP; C4-dicarboxylate-binding protein DctP
D DENOEST_2297 dctQ; C4-dicarboxylate TRAP transporter small permease protein DctQ K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D DENOEST_2298 dctM; C4-dicarboxylate TRAP transporter large permease protein DctM K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D DENOEST_3362 Histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D DENOEST_3361 zraR; Transcriptional regulatory protein ZraR K10943 flrC; two-component system, response regulator FlrC
D DENOEST_2328 conserved protein of unknown function K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_2660 conserved protein of unknown function K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_2820 Cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_3227 conserved protein of unknown function K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_3928 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_2640 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D DENOEST_2641 regA; Photosynthetic apparatus regulatory protein RegA K15012 regA; two-component system, response regulator RegA
D DENOEST_1332 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D DENOEST_1333 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D DENOEST_1334 petC; Ammonia monooxygenase gamma subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D DENOEST_0212 conserved exported protein of unknown function K08738 CYC; cytochrome c
D DENOEST_0224 Cytochrome c, class I K08738 CYC; cytochrome c
D DENOEST_0320 nirM; Cytochrome c-551 K08738 CYC; cytochrome c
D DENOEST_0384 Cytochrome c family protein K08738 CYC; cytochrome c
D DENOEST_0534 Class I cytochrome c K08738 CYC; cytochrome c
D DENOEST_1567 Cytochrome c, class I K08738 CYC; cytochrome c
D DENOEST_1987 nirM; Cytochrome c-551 K08738 CYC; cytochrome c
D DENOEST_1993 Cytochrome c K08738 CYC; cytochrome c
D DENOEST_3165 nirM; Cytochrome c-551 K08738 CYC; cytochrome c
D DENOEST_2498 ccoN; Cbb3-type cytochrome c oxidase subunit CcoN1 K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D DENOEST_2497 K348 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D DENOEST_2496 protein of unknown function K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D DENOEST_0539 Cytochrome c class I K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D DENOEST_2495 ccoP; Cbb3-type cytochrome c oxidase subunit CcoP2 K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D DENOEST_0269 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D DENOEST_3890 Protein CyaE K12340 tolC; outer membrane protein
D DENOEST_3924 Channel protein TolC K12340 tolC; outer membrane protein
D DENOEST_2702 protein of unknown function K07165 fecR; transmembrane sensor
D DENOEST_3518 conserved protein of unknown function K07165 fecR; transmembrane sensor
D DENOEST_3155 Histidine kinase K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3]
D DENOEST_3390 Flagellar biosynthesis anti-sigma factor FlgM (fragment) K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D DENOEST_1332 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:doe02024]
D DENOEST_2784 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D DENOEST_0614 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D DENOEST_3069 trpG; bifunctional protein:[Includes: para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase); anthranilate synthase component II] K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D DENOEST_2840 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DENOEST_1068 conserved protein of unknown function K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D DENOEST_1066 yfhA; putative DNA-binding response regulator in two-component system K07715 glrR; two-component system, NtrC family, response regulator GlrR
D DENOEST_3539 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D DENOEST_3538 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D DENOEST_0816 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D DENOEST_0322 Branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DENOEST_0323 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein
D DENOEST_0324 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein
D DENOEST_0325 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DENOEST_0326 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DENOEST_0733 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DENOEST_1389 putative O-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DENOEST_2328 conserved protein of unknown function K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_2660 conserved protein of unknown function K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_2820 Cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_3227 conserved protein of unknown function K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_3928 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_2695 protein of unknown function K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D DENOEST_3562 ribD; fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino) uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D DENOEST_3744 RND transporter K18139 oprM; outer membrane protein, multidrug efflux system
D DENOEST_1670 Peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DENOEST_1721 Peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DENOEST_1722 Peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DENOEST_1723 yliA; putative peptide transport fused subunits of ABC superfamily: ATP-binding components K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DENOEST_3823 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DENOEST_3150 secE; Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D DENOEST_0948 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D DENOEST_3117 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D DENOEST_2879 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D DENOEST_3075 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DENOEST_3644 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D DENOEST_0425 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D DENOEST_0297 ffh; 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:doe02030]
D DENOEST_1224 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_0523 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_0537 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_0980 Chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_1560 putative Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_1662 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2261 Chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2264 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2266 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2521 putative Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2821 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3271 conserved exported protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3492 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3584 conserved exported protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3737 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3750 aer; Aerotaxis receptor K03776 aer; aerotaxis receptor
D DENOEST_2253 conserved protein of unknown function K03776 aer; aerotaxis receptor
D DENOEST_2289 Hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_2263 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_3399 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_2265 Purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D DENOEST_2283 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D DENOEST_2285 Chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D DENOEST_2260 Two-component system sensor histidine kinase/response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DENOEST_3401 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DENOEST_3400 Protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D DENOEST_2268 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DENOEST_2291 cheB; Chemotaxis response regulator protein-glutamate methylesterase 4 K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DENOEST_3402 cheV; Chemotaxis protein CheV-like K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DENOEST_3403 Fused signal transduction protein/response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DENOEST_2274 cheD; putative chemoreceptor glutamine deamidase CheD 2 K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D DENOEST_2267 cheR; Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D DENOEST_2284 conserved protein of unknown function K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D DENOEST_3364 fliG; flagellar motor switching and energizing component K02410 fliG; flagellar motor switch protein FliG
D DENOEST_3371 fliM; flagellar motor switching and energizing component K02416 fliM; flagellar motor switch protein FliM
D DENOEST_3372 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN
D DENOEST_3393 motC; Flagellar motor protein K02556 motA; chemotaxis protein MotA
D DENOEST_3405 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA
D DENOEST_3392 Flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D DENOEST_3404 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:doe02040]
D DENOEST_3360 fliE; Flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D DENOEST_3363 fliF; flagellar basal-body MS-ring and collar protein K02409 fliF; flagellar M-ring protein FliF
D DENOEST_3364 fliG; flagellar motor switching and energizing component K02410 fliG; flagellar motor switch protein FliG
D DENOEST_3365 conserved protein of unknown function K02411 fliH; flagellar assembly protein FliH
D DENOEST_3366 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D DENOEST_3368 Flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D DENOEST_3369 conserved protein of unknown function K02414 fliK; flagellar hook-length control protein FliK
D DENOEST_3370 Flagellar protein FliL K02415 fliL; flagellar protein FliL
D DENOEST_3371 fliM; flagellar motor switching and energizing component K02416 fliM; flagellar motor switch protein FliM
D DENOEST_3372 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN
D DENOEST_3373 Flagellar protein K02418 fliO; flagellar protein FliO/FliZ
D DENOEST_3374 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D DENOEST_3375 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ
D DENOEST_3376 fliR; flagellar export pore protein K02421 fliR; flagellar biosynthesis protein FliR
D DENOEST_3397 flhA; putative flagellar export pore protein K02400 flhA; flagellar biosynthesis protein FlhA
D DENOEST_3398 flhB; flagellar export pore protein K02401 flhB; flagellar biosynthesis protein FlhB
D DENOEST_3389 Flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D DENOEST_1858 flgB; putative proximal rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D DENOEST_3388 flgB; Flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D DENOEST_3387 flgC; flagellar component of cell-proximal portion of basal-body rod K02388 flgC; flagellar basal-body rod protein FlgC
D DENOEST_3386 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D DENOEST_3385 Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D DENOEST_3384 flgF; flagellar component of cell-proximal portion of basal-body rod K02391 flgF; flagellar basal-body rod protein FlgF
D DENOEST_3383 flgG; flagellar component of cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG
D DENOEST_3382 flgH; flagellar protein of basal-body outer-membrane L ring K02393 flgH; flagellar L-ring protein FlgH
D DENOEST_3381 flgI; flagellar basal body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D DENOEST_3380 flgJ; muramidase K02395 flgJ; peptidoglycan hydrolase FlgJ
D DENOEST_3379 Flagellar hook-associated protein 1 (modular protein) K02396 flgK; flagellar hook-associated protein 1
D DENOEST_3378 conserved protein of unknown function K02397 flgL; flagellar hook-associated protein 3 FlgL
D DENOEST_3348 putative Flagellin K02406 fliC; flagellin
D DENOEST_1075 Flagellin K02406 fliC; flagellin
D DENOEST_3350 putative Flagellin K02406 fliC; flagellin
D DENOEST_3351 Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D DENOEST_3352 fliS; Flagellar secretion chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D DENOEST_3353 FliT flagellar protein K02423 fliT; flagellar protein FliT
D DENOEST_3393 motC; Flagellar motor protein K02556 motA; chemotaxis protein MotA
D DENOEST_3405 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA
D DENOEST_3392 Flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D DENOEST_3404 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB
D DENOEST_3390 Flagellar biosynthesis anti-sigma factor FlgM (fragment) K02398 flgM; negative regulator of flagellin synthesis FlgM
D DENOEST_3391 conserved protein of unknown function K02399 flgN; flagellar biosynthesis protein FlgN
D DENOEST_3491 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor
D DENOEST_3539 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D DENOEST_3538 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D DENOEST_3789 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D DENOEST_3361 zraR; Transcriptional regulatory protein ZraR K10943 flrC; two-component system, response regulator FlrC
D DENOEST_3394 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells [PATH:doe04820]
D DENOEST_3874 ATPase K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha [EC:7.2.2.13]
D DENOEST_2314 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:doe04980]
D DENOEST_2837 cobO; Cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D DENOEST_3296 argK; membrane ATPase/protein kinase K07588 MMAA; GTPase [EC:3.6.5.-]
D DENOEST_3295 yliK; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D DENOEST_1172 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DENOEST_3243 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:doe01501]
D DENOEST_3187 conserved membrane protein of unknown function K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D DENOEST_2188 nagZ; Beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D DENOEST_3746 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DENOEST_3745 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D DENOEST_3744 RND transporter K18139 oprM; outer membrane protein, multidrug efflux system
D DENOEST_0269 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D DENOEST_3890 Protein CyaE K12340 tolC; outer membrane protein
D DENOEST_3924 Channel protein TolC K12340 tolC; outer membrane protein
D DENOEST_2631 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DENOEST_0569 mrdA; transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D DENOEST_3091 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:doe01502]
D DENOEST_3082 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DENOEST_2923 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D DENOEST_3089 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D DENOEST_3088 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DENOEST_3085 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:doe01503]
D DENOEST_2063 yfbF; undecaprenyl phosphate-L-Ara4FN transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D DENOEST_2066 arnD; putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D DENOEST_3195 Serralysin G (modular protein) K01406 prtC; serralysin [EC:3.4.24.40]
D DENOEST_0108 Peptidase M10 serralysin C terminal K01406 prtC; serralysin [EC:3.4.24.40]
D DENOEST_0979 amiC; N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DENOEST_2199 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107]
D DENOEST_0151 dsbA; Thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D DENOEST_3746 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DENOEST_3745 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D DENOEST_0269 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D DENOEST_3890 Protein CyaE K12340 tolC; outer membrane protein
D DENOEST_3924 Channel protein TolC K12340 tolC; outer membrane protein
D DENOEST_0904 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:doe01000]
C 01001 Protein kinases [BR:doe01001]
D DENOEST_0465 conserved protein of unknown function K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D DENOEST_1049 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D DENOEST_1408 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D DENOEST_3068 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D DENOEST_3253 putative serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D DENOEST_1771 Phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DENOEST_1900 Phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DENOEST_3618 conserved protein of unknown function K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DENOEST_0104 putative kinase Y4mE K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DENOEST_1580 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D DENOEST_1395 conserved exported protein of unknown function K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D DENOEST_1696 pcoS; putative sensor protein PcoS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DENOEST_1886 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DENOEST_0815 Histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D DENOEST_2822 Signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D DENOEST_0791 GAF:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase, dimerization and phosphoacceptor region K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D DENOEST_0706 Histidine kinase (fragment) K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D DENOEST_3066 protein of unknown function K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D DENOEST_3912 PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D DENOEST_3626 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D DENOEST_3251 conserved membrane protein of unknown function K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D DENOEST_1068 conserved protein of unknown function K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D DENOEST_0371 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_0515 Two-component sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_0531 Signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2164 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2166 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2172 conserved protein of unknown function K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2247 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2977 conserved protein of unknown function K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_3869 conserved protein of unknown function K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2289 Hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_2263 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_3399 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_2312 cph1; Phytochrome-like protein cph1 K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D DENOEST_2295 PAS domain-containing sensor histidine kinase K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D DENOEST_3362 Histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D DENOEST_2640 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D DENOEST_3155 Histidine kinase K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3]
D DENOEST_0334 PAS domain S-box-containing protein (modular protein) K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:doe01009]
D DENOEST_1185 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D DENOEST_3410 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D DENOEST_1305 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D DENOEST_1409 prpC; Protein phosphatase PrpC K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D DENOEST_2833 Serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D DENOEST_3470 Serine/threonine protein phosphatase PrpC (fragment) K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:doe01002]
D DENOEST_0871 lspA; prolipoprotein signal peptidase (signal peptidase II) K03101 lspA; signal peptidase II [EC:3.4.23.36]
D DENOEST_0300 tapD; Leader peptidase / N-methyltransferase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D DENOEST_1033 putative Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D DENOEST_2025 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D DENOEST_0751 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D DENOEST_2622 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D DENOEST_2619 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DENOEST_1420 Asparagine synthase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D DENOEST_3215 Asparagine synthase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D DENOEST_3921 Glutathione gamma-glutamylcysteinyltransferase K25587 E3.4.17.25; glutathione-S-conjugate glycine hydrolase [EC:3.4.17.25]
D DENOEST_1475 pepN; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D DENOEST_0589 prlC; Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D DENOEST_3195 Serralysin G (modular protein) K01406 prtC; serralysin [EC:3.4.24.40]
D DENOEST_0108 Peptidase M10 serralysin C terminal K01406 prtC; serralysin [EC:3.4.24.40]
D DENOEST_0370 conserved protein of unknown function K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D DENOEST_3642 Zinc protease K07263 pqqL; zinc protease [EC:3.4.24.-]
D DENOEST_3643 putative peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D DENOEST_1452 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DENOEST_3571 conserved protein of unknown function K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DENOEST_2303 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D DENOEST_2326 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D DENOEST_2848 pepP; proline aminopeptidase P II K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D DENOEST_2331 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D DENOEST_0725 Peptidase M48 K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D DENOEST_3701 htpX; Protease HtpX homolog K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D DENOEST_P0020 Peptidase M48 K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D DENOEST_P0119 Peptidase M48 K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D DENOEST_1431 conserved protein of unknown function K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D DENOEST_0899 yaeL; zinc metallopeptidase K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D DENOEST_1318 conserved protein of unknown function K09933 mtfA; MtfA peptidase
D DENOEST_2199 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107]
D DENOEST_2598 Periplasmic serine endoprotease DegP-like K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D DENOEST_3304 dacC; D-alanyl-D-alanine carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DENOEST_0821 Peptidase S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D DENOEST_0406 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D DENOEST_1299 clpP; ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti) (Heat shock protein F21.5) K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D DENOEST_1297 lon; DNA-binding ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D DENOEST_1116 LexA family transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D DENOEST_2183 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88]
D DENOEST_1115 DNA polymerase V, subunit D (modular protein) K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D DENOEST_2195 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D DENOEST_0419 ctpA; Carboxy-terminal-processing protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D DENOEST_2221 Peptidase S49 K04773 sppA; protease IV [EC:3.4.21.-]
D DENOEST_1534 MFS transporter K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D DENOEST_2459 hslV; peptidase component of the HslUV protease K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D DENOEST_2818 yegQ; putative peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D DENOEST_1096 ydcP; putative peptidase K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
D DENOEST_0166 yhbV; protease K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D DENOEST_0165 yhbU; peptidase (collagenase-like) K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D DENOEST_3568 pmbA; peptidase required for the maturation and secretion of the antibiotic peptide MccB17 K03592 pmbA; PmbA protein
D DENOEST_0620 tldD; putative peptidase K03568 tldD; TldD protein
D DENOEST_2781 hflC; Protein HflC K04087 hflC; modulator of FtsH protease HflC
D DENOEST_2782 hflK; Protein HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:doe01003]
D DENOEST_3347 protein of unknown function K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D DENOEST_3858 conserved protein of unknown function K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D DENOEST_0562 conserved membrane protein of unknown function K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D DENOEST_1417 conserved membrane protein of unknown function K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D DENOEST_1572 Glycosyl transferase family 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D DENOEST_3583 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D DENOEST_0564 mtgA; Biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DENOEST_2631 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DENOEST_1680 Beta-(1,2)-glucan production associated transmembrane protein K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:doe01005]
D DENOEST_0904 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D DENOEST_0905 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D DENOEST_3078 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D DENOEST_0902 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D DENOEST_2355 lpxH; UDP-2,3-diacylglucosamine pyrophosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D DENOEST_3236 lpxK; lipid A 4'kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D DENOEST_3536 Lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D DENOEST_3537 Lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D DENOEST_0267 waaA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D DENOEST_2316 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D DENOEST_3238 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D DENOEST_2756 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D DENOEST_2755 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D DENOEST_3044 rfaE; D-beta-D-heptose 7-phosphate kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D DENOEST_3104 D-beta-D-heptose 1-phosphate adenylyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D DENOEST_0266 rfaC; Lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D DENOEST_2913 rfaF; ADP-heptose--LPS heptosyltransferase 2 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D DENOEST_3221 conserved protein of unknown function K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D DENOEST_3222 Heptosyltransferase-3 K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D DENOEST_3102 yraO; DnaA initiator-associating factor for replication initiation K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D DENOEST_0238 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D DENOEST_3045 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D DENOEST_3936 conserved protein of unknown function K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:doe01011]
D DENOEST_0703 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DENOEST_3083 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DENOEST_3084 murC; UDP-N-acetylmuramate:L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D DENOEST_3087 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DENOEST_3090 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DENOEST_3082 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DENOEST_2923 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D DENOEST_1468 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D DENOEST_3088 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DENOEST_3085 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D DENOEST_0281 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D DENOEST_2614 mviN; conserved hypothetical protein; putative inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D DENOEST_2631 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DENOEST_0569 mrdA; transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D DENOEST_3091 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DENOEST_3304 dacC; D-alanyl-D-alanine carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DENOEST_0406 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D DENOEST_0821 Peptidase S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D DENOEST_0564 mtgA; Biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DENOEST_0370 conserved protein of unknown function K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D DENOEST_0194 Lytic transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D DENOEST_3697 Membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D DENOEST_1310 Lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D DENOEST_1724 conserved exported protein of unknown function K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D DENOEST_1105 Peptidoglycan lytic exotransglycosylase K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D DENOEST_1735 yceG; putative conserved membrane associated protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D DENOEST_0567 Endolytic peptidoglycan transglycosylase RlpA (modular protein) K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D DENOEST_0979 amiC; N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DENOEST_3249 ampD; N-acetyl-anhydromuranmyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:doe01004]
D DENOEST_2214 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DENOEST_0841 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DENOEST_1145 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DENOEST_2215 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DENOEST_2211 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DENOEST_1173 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_1373 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2213 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2279 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2893 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_2933 Short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3037 Short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3049 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_3898 3-oxoacyl-ACP reductase (fragment) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DENOEST_0903 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DENOEST_1669 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DENOEST_0997 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D DENOEST_0693 Acyl-CoA thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D DENOEST_1472 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DENOEST_2527 prpE; propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D DENOEST_0757 acsA; Acetoacetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D DENOEST_1601 acsA; Acetoacetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D DENOEST_0733 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DENOEST_1389 putative O-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DENOEST_0775 Fatty-acyl-CoA synthase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D DENOEST_1179 Long-chain acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D DENOEST_2051 conserved protein of unknown function K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D DENOEST_2897 fadD; Long-chain-fatty-acid--CoA ligase FadD17 K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D DENOEST_3324 conserved protein of unknown function K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D DENOEST_2216 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D DENOEST_3484 plsY; 1-acyl glycerol-3-phosphate synthetase component K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DENOEST_0237 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D DENOEST_3510 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:doe01006]
D DENOEST_0972 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D DENOEST_2618 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D DENOEST_0896 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D DENOEST_1302 Phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D DENOEST_1489 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DENOEST_3419 Prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D DENOEST_0367 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D DENOEST_2986 ctaB; Protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:doe01007]
D DENOEST_0634 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DENOEST_0679 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D DENOEST_3876 gluQ; Glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D DENOEST_0351 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DENOEST_1516 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D DENOEST_2350 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DENOEST_0153 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DENOEST_3590 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DENOEST_0870 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DENOEST_1448 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DENOEST_3605 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DENOEST_0637 lysU; lysine tRNA synthetase, inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D DENOEST_0303 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DENOEST_2788 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DENOEST_0241 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DENOEST_0239 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DENOEST_1106 serS; seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DENOEST_0295 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DENOEST_2991 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DENOEST_2919 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DENOEST_2995 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DENOEST_2996 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DENOEST_2058 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DENOEST_1656 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D DENOEST_2300 Succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D DENOEST_2609 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_2804 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DENOEST_2252 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D DENOEST_0197 Aspartate aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DENOEST_1025 conserved protein of unknown function K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D DENOEST_0714 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D DENOEST_2254 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D DENOEST_0508 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D DENOEST_3305 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DENOEST_2911 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DENOEST_0665 Aminobenzoate synthetase K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D DENOEST_3782 Serine-pyruvate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D DENOEST_2807 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DENOEST_1210 Aminotransferase (fragment) K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:doe00194]
D DENOEST_0666 Plastocyanin K02638 petE; plastocyanin
D DENOEST_3837 atpC; F1 sector of membrane-bound ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D DENOEST_3836 atpD; membrane-bound ATP synthase, F1 sector, beta-subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D DENOEST_3835 atpG; F1 sector of membrane-bound ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D DENOEST_3834 atpA; membrane-bound ATP synthase, F1 sector, alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D DENOEST_3833 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D DENOEST_3832 atpF; F0 sector of membrane-bound ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D DENOEST_3831 atpE; F0 sector of membrane-bound ATP synthase, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D DENOEST_3830 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DENOEST_3829 ATP synthase subunit I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:doe03000]
D DENOEST_P0083 conserved protein of unknown function K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_P0179 conserved protein of unknown function K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_P0180 C-5 cytosine-specific DNA methylase (fragment) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_0183 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D DENOEST_1407 ssuR; HTH-type transcriptional regulator SsuR K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D DENOEST_3752 transcriptional regulator cysteine biosynthesis (LysR family) (fragment) K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D DENOEST_2148 Transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D DENOEST_1188 putative HTH-type transcriptional regulator TtgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D DENOEST_3747 Transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D DENOEST_1340 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D DENOEST_2928 putative transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D DENOEST_2568 conserved protein of unknown function K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D DENOEST_0460 putative TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D DENOEST_0828 Transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D DENOEST_1789 merR; Mercuric resistance operon regulatory protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D DENOEST_1794 merD; HTH-type transcriptional regulator MerD K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D DENOEST_2340 fur; DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DENOEST_2695 protein of unknown function K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D DENOEST_2328 conserved protein of unknown function K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_2660 conserved protein of unknown function K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_2820 Cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_3227 conserved protein of unknown function K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_3928 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DENOEST_0786 Transcriptional regulatory protein btr (fragment) K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D DENOEST_1557 Transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D DENOEST_2349 conserved protein of unknown function K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D DENOEST_2485 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D DENOEST_1542 iscR; DNA-binding transcriptional repressor K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D DENOEST_3646 nsrR; HTH-type transcriptional regulator NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D DENOEST_1357 Transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D DENOEST_3909 birA; putative biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D DENOEST_1613 protein of unknown function K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DENOEST_2855 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DENOEST_2444 conserved protein of unknown function K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D DENOEST_0105 Uncharacterized HTH-type transcriptional regulator y4mF K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D DENOEST_3994 Transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D DENOEST_0068 Transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D DENOEST_3964 Transcriptional regulator K07726 K07726; putative transcriptional regulator
D DENOEST_0038 Transcriptional regulator K07726 K07726; putative transcriptional regulator
D DENOEST_1024 conserved protein of unknown function K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DENOEST_3739 4Fe-4S binding protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D DENOEST_1320 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D DENOEST_1845 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DENOEST_2013 conserved protein of unknown function K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DENOEST_3828 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DENOEST_P0095 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DENOEST_2343 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D DENOEST_1612 Transcription elongation factor GreAB (modular protein) K06140 rnk; regulator of nucleoside diphosphate kinase
D DENOEST_2023 conserved protein of unknown function K07733 alpA; prophage regulatory protein
D DENOEST_0243 yqgE; hypothetical protein K07735 algH; putative transcriptional regulator
D DENOEST_2169 conserved exported protein of unknown function K07735 algH; putative transcriptional regulator
D DENOEST_1527 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D DENOEST_3563 nrdR; transcriptional repressor of nrd genes K07738 nrdR; transcriptional repressor NrdR
D DENOEST_3094 mraZ; conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:doe03021]
D DENOEST_3112 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DENOEST_3144 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DENOEST_3143 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DENOEST_3474 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D DENOEST_3491 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor
D DENOEST_1309 rpoS; RNA polymerase, sigma S (sigma 38) factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D DENOEST_1458 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D DENOEST_2203 rpoE; RNA polymerase, sigma 24 (sigma E) factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D DENOEST_0386 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D DENOEST_0287 rpoH; RNA polymerase, sigma 32 (sigma H) factor K03089 rpoH; RNA polymerase sigma-32 factor
D DENOEST_3789 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D DENOEST_3394 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D DENOEST_1521 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
D DENOEST_3797 transcription antitermination protein (modular protein) K03625 nusB; transcription antitermination protein NusB
D DENOEST_3149 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D DENOEST_1335 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D DENOEST_1336 sspB; ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D DENOEST_2202 conserved protein of unknown function K03597 rseA; sigma-E factor negative regulatory protein RseA
D DENOEST_2201 conserved exported protein of unknown function K03598 rseB; sigma-E factor negative regulatory protein RseB
D DENOEST_2200 Positive regulator of sigma E activity K03803 rseC; sigma-E factor negative regulatory protein RseC
D DENOEST_1527 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D DENOEST_2335 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA
D DENOEST_1051 greB; Transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D DENOEST_0729 rho; transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:doe03019]
D DENOEST_2226 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D DENOEST_3196 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D DENOEST_2193 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DENOEST_0805 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DENOEST_0306 putative Ribonuclease T(1) K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D DENOEST_0726 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D DENOEST_2680 conserved protein of unknown function K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D DENOEST_0469 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D DENOEST_0607 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D DENOEST_2829 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D DENOEST_0671 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DENOEST_2356 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D DENOEST_2314 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DENOEST_1526 pnp; polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D DENOEST_0729 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D DENOEST_2347 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK
D DENOEST_3765 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DENOEST_2784 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D DENOEST_1655 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D DENOEST_0803 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D DENOEST_0294 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D DENOEST_1449 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase K02553 rraA; regulator of ribonuclease activity A
D DENOEST_0130 conserved protein of unknown function K06958 rapZ; RNase adapter protein RapZ
D DENOEST_2762 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:doe03011]
D DENOEST_3039 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D DENOEST_0892 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D DENOEST_3131 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D DENOEST_3113 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D DENOEST_3120 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D DENOEST_0475 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D DENOEST_3141 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D DENOEST_3123 rpsH; 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D DENOEST_0344 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D DENOEST_3138 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D DENOEST_3114 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D DENOEST_3142 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D DENOEST_3115 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D DENOEST_3124 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D DENOEST_1525 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D DENOEST_2526 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D DENOEST_3128 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D DENOEST_0477 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D DENOEST_3133 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D DENOEST_2613 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D DENOEST_3488 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D DENOEST_3147 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D DENOEST_3134 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D DENOEST_3137 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D DENOEST_3136 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D DENOEST_3125 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D DENOEST_3122 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D DENOEST_0478 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D DENOEST_3146 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D DENOEST_3148 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D DENOEST_3145 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D DENOEST_0343 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D DENOEST_3127 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D DENOEST_3118 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D DENOEST_3130 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D DENOEST_3111 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D DENOEST_3121 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D DENOEST_2523 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D DENOEST_2994 rplT; 50S ribosomal protein L20, also posttranslational autoregulator K02887 RP-L20; large subunit ribosomal protein L20
D DENOEST_0474 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D DENOEST_3132 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D DENOEST_3135 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D DENOEST_3126 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D DENOEST_0473 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D DENOEST_1019 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D DENOEST_3129 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D DENOEST_3119 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D DENOEST_0728 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D DENOEST_2217 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D DENOEST_1018 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D DENOEST_3821 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D DENOEST_2993 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D DENOEST_3633 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D DENOEST_RRNA6 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C 03009 Ribosome biogenesis [BR:doe03009]
D DENOEST_2193 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DENOEST_0726 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D DENOEST_2192 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D DENOEST_0472 putative GTP-binding protein (Obg) K03979 obgE; GTPase [EC:3.6.5.-]
D DENOEST_1527 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D DENOEST_1521 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
D DENOEST_3797 transcription antitermination protein (modular protein) K03625 nusB; transcription antitermination protein NusB
D DENOEST_3149 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D DENOEST_0682 rsuA; Pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D DENOEST_2841 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D DENOEST_1499 SAM-dependent methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D DENOEST_3628 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D DENOEST_3641 yhhF; putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D DENOEST_3286 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D DENOEST_3826 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DENOEST_3093 mraW; S-adenosyl-dependent methyltransferase activity on membrane-located substrates K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D DENOEST_2220 Uroporphyrin-III C/tetrapyrrole (Corrin/porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D DENOEST_3099 yraL; putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D DENOEST_3411 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D DENOEST_2187 rlmB; 23S rRNA (Gm2251)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D DENOEST_2332 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D DENOEST_3200 ybeA; conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D DENOEST_2453 rlmI; Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D DENOEST_3064 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D DENOEST_1676 rlmJ; Ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D DENOEST_0339 rlmL; Ribosomal RNA large subunit methyltransferase L K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D DENOEST_2463 putative enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D DENOEST_2792 yfgB; putative Fe-S containing enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D DENOEST_2031 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D DENOEST_1519 rluB; 23S rRNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D DENOEST_2225 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D DENOEST_1641 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D DENOEST_0598 ymfC; 23S rRNA pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D DENOEST_1678 Pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D DENOEST_1362 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D DENOEST_2525 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D DENOEST_1605 yliG; putative AdoMet-dependent methyltransferase, UPF0004 family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D DENOEST_2185 Protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D DENOEST_3506 prmA; methylase for 50S ribosomal subunit protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D DENOEST_2304 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D DENOEST_2226 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D DENOEST_3196 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D DENOEST_0244 yqgF; Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D DENOEST_0690 dbpA; ATP-dependent RNA helicase, specific for 23S rRNA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D DENOEST_0671 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DENOEST_0724 rsgA; Small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D DENOEST_2785 der; GTPase involved in ribosome synthesis and maintenance K03977 engA; GTPase
D DENOEST_3270 Ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A
D DENOEST_1478 hflX; GTPase HflX K03665 hflX; GTPase
D DENOEST_2783 hflX; putative GTPase K03665 hflX; GTPase
D DENOEST_1108 sua; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DENOEST_3475 spoT; bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D DENOEST_1523 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D DENOEST_1520 yhbC; conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D DENOEST_3269 conserved protein of unknown function K14761 rlbA; ribosome-associated protein
D DENOEST_3201 conserved protein of unknown function K09710 ybeB; ribosome-associated protein
D DENOEST_0311 ybeY; putative metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
D DENOEST_2333 conserved protein of unknown function K07574 yhbY; RNA-binding protein
D DENOEST_3569 yjgA; conserved hypothetical protein K09889 yjgA; ribosome-associated protein
D DENOEST_3788 yhbH; ribosome-associated, sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
D DENOEST_3631 putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
D DENOEST_2218 conserved protein of unknown function K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:doe03016]
D DENOEST_0306 putative Ribonuclease T(1) K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D DENOEST_0192 cca; fused tRNA nucleotidyl transferase; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D DENOEST_0634 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DENOEST_0295 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DENOEST_0870 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DENOEST_3605 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DENOEST_3590 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DENOEST_0679 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D DENOEST_0153 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DENOEST_0637 lysU; lysine tRNA synthetase, inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D DENOEST_0303 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DENOEST_2919 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DENOEST_2991 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DENOEST_1106 serS; seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DENOEST_2350 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DENOEST_1448 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DENOEST_2788 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DENOEST_2995 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DENOEST_2996 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DENOEST_0351 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DENOEST_1516 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D DENOEST_2233 hit; Protein hit K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D DENOEST_2602 hitA; Protein HitA K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D DENOEST_3435 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D DENOEST_0743 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D DENOEST_1524 truB; tRNA pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D DENOEST_1543 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DENOEST_1544 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DENOEST_1108 sua; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DENOEST_1489 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DENOEST_3824 trmE; GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D DENOEST_3825 gidA; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D DENOEST_0995 selD; Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D DENOEST_2559 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D DENOEST_3822 rnpA; Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D DENOEST_MISCRNA1 RNaseP_bact_a K01978 rnpB; M1 RNA
D DENOEST_3464 rph; Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D DENOEST_0283 Ribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D DENOEST_0814 RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D DENOEST_1101 yjjK; fused putative transporter subunits of ABC superfamily: ATP-binding components K06020 ettA; energy-dependent translational throttle protein EttA
D DENOEST_0241 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DENOEST_0239 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DENOEST_3876 gluQ; Glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D DENOEST_1712 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D DENOEST_2853 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D DENOEST_0626 dusC; tRNA-dihydrouridine(16) synthase K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D DENOEST_0309 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D DENOEST_1347 yfhQ; putative methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D DENOEST_2524 trmD; tRNA (guanine-1-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D DENOEST_0428 yibK; putative rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D DENOEST_0907 conserved protein of unknown function K03437 spoU; RNA methyltransferase, TrmH family
D DENOEST_1744 truC; tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D DENOEST_2890 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D DENOEST_3781 ydaO; putative C32 tRNA thiolase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D DENOEST_1433 tusA; Sulfur carrier protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D DENOEST_1546 iscA; iron-binding protein, believed to be involved in Fe-S protein formation or repair K13628 iscA; iron-sulfur cluster assembly protein
D DENOEST_1736 conserved protein of unknown function K06980 ygfZ; tRNA-modifying protein YgfZ
D DENOEST_2653 mnmC; tRNA (mnm(5)s(2)U34)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D DENOEST_2877 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D DENOEST_3434 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D DENOEST_1479 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D DENOEST_3433 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D DENOEST_1004 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D DENOEST_0977 yjeS; putative Fe-S electron transport protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D DENOEST_0994 tRNA 2-selenouridine/geranyl-2-thiouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D DENOEST_2878 tgt; queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) (Guanine insertion enzyme) K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D DENOEST_2794 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D DENOEST_1361 Peptidase m22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D DENOEST_3485 putative O-sialoglycoprotein endopeptidase gcp K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D DENOEST_0978 yjeE; ATPase with strong ADP affinity K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D DENOEST_3777 ygdL; conserved hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D DENOEST_0805 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DENOEST_1526 pnp; polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:doe03012]
D DENOEST_1522 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D DENOEST_2992 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D DENOEST_0278 yheS; fused putative transporter subunits of ABC superfamily: ATP-binding components K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D DENOEST_2074 yheS; fused putative transporter subunits of ABC superfamily: ATP-binding components K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D DENOEST_0893 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts
D DENOEST_3139 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D DENOEST_3151 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D DENOEST_2814 Translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D DENOEST_3140 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D DENOEST_2902 selB; Selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D DENOEST_0457 prfA; peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1
D DENOEST_0895 frr; ribosome releasing factor K02838 frr; ribosome recycling factor
D DENOEST_0458 prmC; N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D DENOEST_3632 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D DENOEST_2655 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D DENOEST_3116 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D DENOEST_1715 efp; Elongation factor P K02356 efp; elongation factor P
D DENOEST_0647 prfB; Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D DENOEST_0646 prfC; peptide chain release factor RF-3 K02837 prfC; peptide chain release factor 3
D DENOEST_3903 yaeJ; conserved hypothetical protein K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:doe03110]
D DENOEST_0606 clpA; ATP-binding protease component K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D DENOEST_0988 clpB; protein disaggregation chaperone K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D DENOEST_1298 clpX; ATP-dependent Clp protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D DENOEST_2460 hslU; molecular chaperone and ATPase component of HslUV protease K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D DENOEST_1305 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D DENOEST_2347 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK
D DENOEST_1548 hscA; DnaK-like molecular chaperone specific for IscU K04044 hscA; molecular chaperone HscA
D DENOEST_3765 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DENOEST_2348 dnaJ; chaperone Hsp40, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D DENOEST_1547 hscB; Co-chaperone protein HscB homolog K04082 hscB; molecular chaperone HscB
D DENOEST_0940 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33
D DENOEST_2346 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D DENOEST_3442 Heat-shock protein Hsp20 K13993 HSP20; HSP20 family protein
D DENOEST_0946 hslR; Heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D DENOEST_3766 groES; chaperone Hsp10, affects cell division K04078 groES; chaperonin GroES
D DENOEST_2199 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107]
D DENOEST_2331 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D DENOEST_3830 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DENOEST_0425 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D DENOEST_2072 conserved exported protein of unknown function K06006 cpxP; periplasmic protein CpxP/Spy
D DENOEST_2639 conserved exported protein of unknown function K09796 pccA; periplasmic copper chaperone A
D DENOEST_2259 hybF; protein involved with the maturation of hydrogenases 1 and 2 K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D DENOEST_2258 hypB; GTP hydrolase involved in nickel liganding into hydrogenases K04652 hypB; hydrogenase nickel incorporation protein HypB
D DENOEST_1355 conserved protein of unknown function K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D DENOEST_1981 Respiratory arsenate reductase cytoplasmic chaperone K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D DENOEST_1995 pcrD; Perchlorate reductase assembly chaperone protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D DENOEST_2075 conserved protein of unknown function K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D DENOEST_3313 Putative steroid C25 dehydrogenase-like delta-subunit (fragment) K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D DENOEST_3320 conserved protein of unknown function K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D DENOEST_2353 ppiB; peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase) K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D DENOEST_2354 ppiB; peptidyl-prolyl cis-trans isomerase B (rotamase B) K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D DENOEST_1406 Peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D DENOEST_0259 fbp; putative Peptidylprolyl isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D DENOEST_0872 Peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D DENOEST_2135 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D DENOEST_0463 Peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D DENOEST_1319 putative parvulin-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D DENOEST_2843 surA; Chaperone SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D DENOEST_0730 trxA; thioredoxin 1 K03671 TXN; thioredoxin
D DENOEST_3300 Thiol reductase thioredoxin K03671 TXN; thioredoxin
D DENOEST_0424 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D DENOEST_0462 Uncharacterized monothiol glutaredoxin ycf64-like K07390 grxD; monothiol glutaredoxin
D DENOEST_0151 dsbA; Thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D DENOEST_2939 dsbB; Disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D DENOEST_1809 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DENOEST_1925 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DENOEST_3615 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DENOEST_P0042 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DENOEST_P0136 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DENOEST_3770 dipZ; Thiol:disulfide interchange protein: activator of DsbC K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D DENOEST_0521 ccmG; periplasmic thioredoxin of cytochrome c-type biogenesis K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:doe04131]
D DENOEST_2793 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DENOEST_0187 mneA; putative manganese exporter K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D DENOEST_1285 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_2543 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_3281 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_0421 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DENOEST_3279 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DENOEST_1305 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:doe03051]
D DENOEST_1305 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:doe03032]
D DENOEST_0938 Ribonuclease HI (fragment) K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D DENOEST_P0083 conserved protein of unknown function K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_P0179 conserved protein of unknown function K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_P0180 C-5 cytosine-specific DNA methylase (fragment) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_1627 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K03530 hupB; DNA-binding protein HU-beta
D DENOEST_1773 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D DENOEST_1902 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D DENOEST_2617 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D DENOEST_P0106 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta
D DENOEST_2997 himA; integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication K04764 ihfA; integration host factor subunit alpha
D DENOEST_3040 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D DENOEST_3820 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D DENOEST_2517 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D DENOEST_3490 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D DENOEST_P0098 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D DENOEST_1853 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_2019 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_3613 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0081 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0177 protein of unknown function K03111 ssb; single-strand DNA-binding protein
D DENOEST_3595 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DENOEST_3819 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DENOEST_1451 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DENOEST_3608 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DENOEST_1733 holB; DNA-directed DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DENOEST_1350 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DENOEST_3259 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DENOEST_1328 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DENOEST_0906 rnhB; ribonuclease HII, degrades RNA of DNA-RNA hybrids K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D DENOEST_3207 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DENOEST_1007 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DENOEST_1485 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D DENOEST_2808 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D DENOEST_3818 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D DENOEST_3358 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DENOEST_3357 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DENOEST_3707 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:doe03036]
D DENOEST_3347 protein of unknown function K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D DENOEST_3858 conserved protein of unknown function K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D DENOEST_P0083 conserved protein of unknown function K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_P0179 conserved protein of unknown function K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_P0180 C-5 cytosine-specific DNA methylase (fragment) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_2193 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DENOEST_1627 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K03530 hupB; DNA-binding protein HU-beta
D DENOEST_1773 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D DENOEST_1902 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D DENOEST_2617 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D DENOEST_P0106 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta
D DENOEST_2997 himA; integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication K04764 ihfA; integration host factor subunit alpha
D DENOEST_3040 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D DENOEST_3820 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D DENOEST_1613 protein of unknown function K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DENOEST_2855 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DENOEST_2784 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D DENOEST_1005 smc; Chromosome partition protein Smc K03529 smc; chromosome segregation protein
D DENOEST_1517 scpA; Segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D DENOEST_1518 scpB; Segregation and condensation protein B homolog K06024 scpB; segregation and condensation protein B
D DENOEST_3080 ftsA; ATP-binding cell division protein involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA
D DENOEST_2313 ftsB; Cell division protein FtsB K05589 ftsB; cell division protein FtsB
D DENOEST_0340 ftsE; transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D DENOEST_3091 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DENOEST_2659 ftsK; DNA translocase FtsK 2 K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D DENOEST_3092 ftsL; Cell division protein FtsL K03586 ftsL; cell division protein FtsL
D DENOEST_3081 ftsQ; Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D DENOEST_3086 ftsW; integral membrane protein involved in stabilizing FstZ ring during cell division K03588 ftsW; cell division protein FtsW
D DENOEST_0341 Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DENOEST_3079 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D DENOEST_3178 Cell division protein ZapA K09888 zapA; cell division protein ZapA
D DENOEST_3179 conserved protein of unknown function K09892 zapB; cell division protein ZapB
D DENOEST_3904 zapD; Cell division protein ZapD K18778 zapD; cell division protein ZapD
D DENOEST_2138 zapE; Cell division protein ZapE K06916 zapE; cell division protein ZapE
D DENOEST_0979 amiC; N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DENOEST_3746 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DENOEST_2866 minC; putative septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D DENOEST_2865 minD; cell division inhibitor, a membrane ATPase,activates minC K03609 minD; septum site-determining protein MinD
D DENOEST_2864 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D DENOEST_0573 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D DENOEST_0572 Cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D DENOEST_0571 Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D DENOEST_0568 mrdB; cell wall shape-determining protein K05837 rodA; rod shape determining protein RodA
D DENOEST_2610 Chromosome partitioning protein K03496 parA; chromosome partitioning protein
D DENOEST_3596 Partition-related protein K03496 parA; chromosome partitioning protein
D DENOEST_3598 Cobyric acid synthase K03496 parA; chromosome partitioning protein
D DENOEST_3827 conserved protein of unknown function K03496 parA; chromosome partitioning protein
D DENOEST_P0096 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D DENOEST_1845 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DENOEST_2013 conserved protein of unknown function K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DENOEST_3828 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DENOEST_P0095 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DENOEST_3358 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DENOEST_3357 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DENOEST_3825 gidA; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D DENOEST_3826 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DENOEST_3532 xerC; site-specific tyrosine recombinase K03733 xerC; integrase/recombinase XerC
D DENOEST_1935 putative integrase/recombinase y4qK K04763 xerD; integrase/recombinase XerD
D DENOEST_1986 Recombinase K04763 xerD; integrase/recombinase XerD
D DENOEST_3611 xerD; site-specific tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D DENOEST_3978 Tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D DENOEST_0051 Tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D DENOEST_3589 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D DENOEST_P0013 Cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D DENOEST_P0112 protein of unknown function K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D DENOEST_3448 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:doe03400]
D DENOEST_3610 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D DENOEST_0126 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D DENOEST_1687 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D DENOEST_3699 Thiamine monophosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D DENOEST_1023 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D DENOEST_1363 putative phage SPO1 DNA polymerase-related protein, uracil-DNA glycosylase family K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D DENOEST_1717 Type-5 uracil-DNA glycosylase (modular protein) K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D DENOEST_0990 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D DENOEST_3638 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D DENOEST_0579 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DENOEST_0587 xth; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DENOEST_2232 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DENOEST_1007 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DENOEST_3207 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DENOEST_0190 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D DENOEST_2132 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D DENOEST_1718 uvrC; excinuclease UvrABC, endonuclease subunit K03703 uvrC; excinuclease ABC subunit C
D DENOEST_1942 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DENOEST_2021 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DENOEST_3603 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DENOEST_3144 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DENOEST_3143 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DENOEST_3112 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DENOEST_3474 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D DENOEST_0912 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D DENOEST_2134 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D DENOEST_1490 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D DENOEST_3230 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D DENOEST_0973 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DENOEST_3595 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DENOEST_3819 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DENOEST_1451 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DENOEST_3608 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DENOEST_1733 holB; DNA-directed DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DENOEST_1350 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DENOEST_3259 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DENOEST_1328 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DENOEST_1853 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_2019 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_3613 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0081 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0177 protein of unknown function K03111 ssb; single-strand DNA-binding protein
D DENOEST_1674 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D DENOEST_1673 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D DENOEST_1675 recD; exonuclease V (RecBCD complex), alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D DENOEST_3792 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D DENOEST_3420 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
D DENOEST_3422 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D DENOEST_3417 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D DENOEST_3622 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D DENOEST_0476 Primosomal replication protein N (fragment) K02686 priB; primosomal replication protein N
D DENOEST_2922 radA; repair protein radA homolog K04485 radA; DNA repair protein RadA/Sms
D DENOEST_0365 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D DENOEST_2191 recO; gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D DENOEST_1330 recR; gap repair protein K06187 recR; recombination protein RecR
D DENOEST_2341 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D DENOEST_1739 rdgC; Recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D DENOEST_0921 ygbT; conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D DENOEST_3415 yjgR; putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D DENOEST_2808 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D DENOEST_3818 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D DENOEST_1627 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K03530 hupB; DNA-binding protein HU-beta
D DENOEST_1773 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D DENOEST_1902 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D DENOEST_2617 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D DENOEST_P0106 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta
D DENOEST_1848 RecT protein K07455 recT; recombination protein RecT
D DENOEST_2015 RecT protein (fragment) K07455 recT; recombination protein RecT
D DENOEST_1613 protein of unknown function K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DENOEST_2855 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DENOEST_2997 himA; integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication K04764 ihfA; integration host factor subunit alpha
D DENOEST_3040 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D DENOEST_2356 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D DENOEST_1582 dbh; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D DENOEST_1115 DNA polymerase V, subunit D (modular protein) K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D DENOEST_1116 LexA family transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D DENOEST_2183 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88]
D DENOEST_3791 recX; Regulatory protein RecX K03565 recX; regulatory protein
D DENOEST_2869 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D DENOEST_0982 putative ATP-dependent DNA helicase HI_0387 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D DENOEST_2277 Vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:doe03029]
D DENOEST_1333 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D DENOEST_1522 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D DENOEST_2992 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D DENOEST_0893 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts
D DENOEST_3139 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D DENOEST_3151 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D DENOEST_2814 Translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D DENOEST_3140 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D DENOEST_2192 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D DENOEST_0351 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DENOEST_3605 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DENOEST_0303 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DENOEST_0153 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DENOEST_0575 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D DENOEST_0576 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D DENOEST_0574 gatC; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D DENOEST_1853 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_2019 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_3613 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0081 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DENOEST_P0177 protein of unknown function K03111 ssb; single-strand DNA-binding protein
D DENOEST_0900 bamA; Outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D DENOEST_2347 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK
D DENOEST_2346 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D DENOEST_3765 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DENOEST_3766 groES; chaperone Hsp10, affects cell division K04078 groES; chaperonin GroES
D DENOEST_2348 dnaJ; chaperone Hsp40, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D DENOEST_1543 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DENOEST_1544 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DENOEST_1547 hscB; Co-chaperone protein HscB homolog K04082 hscB; molecular chaperone HscB
D DENOEST_0462 Uncharacterized monothiol glutaredoxin ycf64-like K07390 grxD; monothiol glutaredoxin
D DENOEST_3589 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D DENOEST_2986 ctaB; Protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141]
D DENOEST_2990 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D DENOEST_3823 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DENOEST_2980 Electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D DENOEST_2985 Electron transporter SenC K07152 SCO1; protein SCO1
D DENOEST_3493 conserved protein of unknown function K07152 SCO1; protein SCO1
D DENOEST_3496 conserved protein of unknown function K07152 SCO1; protein SCO1
D DENOEST_1305 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:doe02000]
D DENOEST_3220 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D DENOEST_0692 atm; ATM1-type heavy metal exporter K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D DENOEST_0595 ABC transporter, transmembrane region:ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D DENOEST_3922 aprD; Alkaline protease secretion ATP-binding protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D DENOEST_2179 uup-A; ABC transporter ATP-binding protein uup-1 K15738 uup; ABC transport system ATP-binding/permease protein
D DENOEST_3757 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DENOEST_3864 exported protein of unknown function K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DENOEST_3755 cysT; sulfate transport protein (ABC superfamily, membrane) K02046 cysU; sulfate/thiosulfate transport system permease protein
D DENOEST_3754 cysW; sulfate transport protein (ABC superfamily, membrane) K02047 cysW; sulfate/thiosulfate transport system permease protein
D DENOEST_3753 sulfate permease A protein, chromate resistance (ABC superfamily, atp_bind) (fragment) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DENOEST_3161 modA; Molybdate-binding protein ModA K02020 modA; molybdate transport system substrate-binding protein
D DENOEST_3162 modB; Molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein
D DENOEST_3163 modC; molybdate transporter subunit; ATP-binding component of ABC superfamily K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D DENOEST_0859 Twin-arginine translocation pathway signal K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D DENOEST_0860 nasE; putative nitrate transport system permease K15577 nrtB; nitrate/nitrite transport system permease protein
D DENOEST_0861 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D DENOEST_1668 futA; Iron uptake protein A1 K02012 afuA; iron(III) transport system substrate-binding protein
D DENOEST_1667 Iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D DENOEST_1666 potA; Spermidine/putrescine import ATP-binding protein PotA 2 K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DENOEST_0164 Putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D DENOEST_0163 potC; polyamine transporter subunit; membrane component of ABC superfamily K11070 potC; spermidine/putrescine transport system permease protein
D DENOEST_0162 potB; polyamine transporter subunit; membrane component of ABC superfamily K11071 potB; spermidine/putrescine transport system permease protein
D DENOEST_0161 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D DENOEST_0696 yrbD; toluene transporter subunit: membrane component of ABC superfamily K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D DENOEST_2319 conserved protein of unknown function K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D DENOEST_0695 yrbE; toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D DENOEST_2321 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D DENOEST_0694 yrbF; toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DENOEST_2234 yrbF; toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DENOEST_2320 ABC transporter-like protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DENOEST_2318 conserved protein of unknown function K18480 linN; cholesterol transport system auxiliary component
D DENOEST_0698 conserved exported protein of unknown function K07323 mlaC; phospholipid transport system substrate-binding protein
D DENOEST_0699 conserved protein of unknown function K07122 mlaB; phospholipid transport system transporter-binding protein
D DENOEST_2920 conserved exported protein of unknown function K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D DENOEST_1574 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein
D DENOEST_1575 pstC; phosphate transporter subunit; membrane component of ABC superfamily K02037 pstC; phosphate transport system permease protein
D DENOEST_1576 pstA; phosphate transporter subunit; membrane component of ABC superfamily K02038 pstA; phosphate transport system permease protein
D DENOEST_1577 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D DENOEST_0176 Phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D DENOEST_0178 phnE; Phosphate-import permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D DENOEST_0177 phnC; Phosphonates import ATP-binding protein PhnC K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D DENOEST_0322 Branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DENOEST_0323 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein
D DENOEST_0324 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein
D DENOEST_0325 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DENOEST_0326 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DENOEST_1670 Peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DENOEST_1721 Peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DENOEST_1722 Peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DENOEST_1723 yliA; putative peptide transport fused subunits of ABC superfamily: ATP-binding components K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DENOEST_0652 Periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D DENOEST_0653 Cobalamin-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D DENOEST_1159 Cobalamin-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D DENOEST_1200 ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein
D DENOEST_3181 ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein
D DENOEST_1201 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D DENOEST_3182 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D DENOEST_2457 Zinc ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D DENOEST_2458 Zinc/manganese transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D DENOEST_3932 Transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D DENOEST_3933 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D DENOEST_1453 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D DENOEST_1454 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D DENOEST_3790 lptB; putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D DENOEST_3773 nodJ; Nodulation protein J K09694 nodJ; lipooligosaccharide transport system permease protein
D DENOEST_0173 nodI; Nod factor export ATP-binding protein I K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D DENOEST_3742 nosY; putative ABC transporter permease protein NosY K19341 nosY; Cu-processing system permease protein
D DENOEST_3741 nosF; putative ABC transporter ATP-binding protein NosF K19340 nosF; Cu-processing system ATP-binding protein
D DENOEST_2230 lolC; Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D DENOEST_2229 lolD; outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D DENOEST_0560 ccmD; Heme exporter protein D K02196 ccmD; heme exporter protein D
D DENOEST_0559 ccmC; heme exporter subunit; membrane component of ABC superfamily K02195 ccmC; heme exporter protein C
D DENOEST_0526 ccmB; heme exporter subunit; membrane component of ABC superfamily K02194 ccmB; heme exporter protein B
D DENOEST_0527 ccmA; heme exporter subunit; ATP-binding component of ABC superfamily K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D DENOEST_0341 Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DENOEST_0340 ftsE; transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D DENOEST_0701 Transport permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D DENOEST_0700 ABC transporter ATP-binding subunit K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D DENOEST_1043 Peptide ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D DENOEST_1044 Peptide ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D DENOEST_1649 conserved membrane protein of unknown function K02004 ABC.CD.P; putative ABC transport system permease protein
D DENOEST_2921 conserved membrane protein of unknown function K02004 ABC.CD.P; putative ABC transport system permease protein
D DENOEST_0998 ybbA; putative transporter subunit: ATP-binding component of ABC superfamily K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D DENOEST_1045 Macrolide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D DENOEST_1650 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D DENOEST_3803 sufC; component of SufBCD complex, ATP-binding component of ABC superfamily K09013 sufC; Fe-S cluster assembly ATP-binding protein
D DENOEST_0223 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D DENOEST_0736 MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D DENOEST_0796 Antiporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D DENOEST_0797 Nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D DENOEST_0862 nasA; Nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D DENOEST_2924 Lysophospholipid transporter LplT K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D DENOEST_3187 conserved membrane protein of unknown function K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D DENOEST_1253 conserved membrane protein of unknown function K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D DENOEST_0479 emrB; multidrug efflux system protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D DENOEST_0480 emrB; Multidrug export protein EmrB K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D DENOEST_0481 emrB; multidrug efflux system protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D DENOEST_1714 emrB; Multidrug export protein EmrB K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D DENOEST_2412 emrB; MFS transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D DENOEST_3190 phbI; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D DENOEST_3191 phbH; Phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D DENOEST_0113 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D DENOEST_3787 ptsN; Phosphotransferase enzyme IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D DENOEST_0832 TrkA-N domain-containing protein (fragment) K10716 kch; voltage-gated potassium channel
D DENOEST_3170 amtB; ammonium transporter K03320 amt; ammonium transporter, Amt family
D DENOEST_3696 Ammonium transporter K03320 amt; ammonium transporter, Amt family
D DENOEST_1304 gst; glutathionine S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DENOEST_2888 yibF; Uncharacterized GST-like protein YibF K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DENOEST_1335 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D DENOEST_3020 conserved membrane protein of unknown function K07114 yfbK; Ca-activated chloride channel homolog
D DENOEST_3021 conserved protein of unknown function K07114 yfbK; Ca-activated chloride channel homolog
D DENOEST_0124 conserved membrane protein of unknown function K19416 yccA; modulator of FtsH protease
D DENOEST_0563 Magnesium transporter MgtE K06213 mgtE; magnesium transporter
D DENOEST_3393 motC; Flagellar motor protein K02556 motA; chemotaxis protein MotA
D DENOEST_3405 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA
D DENOEST_3392 Flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D DENOEST_3404 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB
D DENOEST_0784 exbB; Biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D DENOEST_2387 exbB; Biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D DENOEST_3234 Flagellar motor protein MotA K03561 exbB; biopolymer transport protein ExbB
D DENOEST_0782 Biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D DENOEST_0783 Outer membrane transport energization protein ExbD K03559 exbD; biopolymer transport protein ExbD
D DENOEST_2388 Outer membrane transport energization protein ExbD K03559 exbD; biopolymer transport protein ExbD
D DENOEST_2389 Biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D DENOEST_3235 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D DENOEST_3427 tolQ; membrane spanning protein in TolA-TolQ-TolR complex K03562 tolQ; biopolymer transport protein TolQ
D DENOEST_3428 tolR; Tol-Pal system protein TolR K03560 tolR; biopolymer transport protein TolR
D DENOEST_2832 corA; Cobalt/magnesium transport protein CorA K03284 corA; magnesium transporter
D DENOEST_0685 crcB; putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter
D DENOEST_1790 merT; Mercuric transport protein MerT K08363 merT; mercuric ion transport protein
D DENOEST_1791 merP; Mercuric transport protein periplasmic component K08364 merP; periplasmic mercuric ion binding protein
D DENOEST_1792 merC; Mercuric transport protein MerC K19058 merC; mercuric ion transport protein
D DENOEST_1795 merE; Broad mercury transporter MerE K19059 merE; mercuric ion transport protein
D DENOEST_1079 conserved membrane protein of unknown function K03699 tlyC; magnesium and cobalt exporter, CNNM family
D DENOEST_1618 conserved protein of unknown function K03699 tlyC; magnesium and cobalt exporter, CNNM family
D DENOEST_2476 Porin K16080 mnoP; high affinity Mn2+ porin
D DENOEST_1816 conserved protein of unknown function K03286 TC.OOP; OmpA-OmpF porin, OOP family
D DENOEST_1932 psaB; Photosystem I P700 chlorophyll a apoprotein A2 K03286 TC.OOP; OmpA-OmpF porin, OOP family
D DENOEST_2810 ompA; Outer membrane protein A K03286 TC.OOP; OmpA-OmpF porin, OOP family
D DENOEST_3760 putative long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D DENOEST_2117 TonB-dependent receptor K16090 fiu; catecholate siderophore receptor
D DENOEST_3058 TonB-dependent receptor K16090 fiu; catecholate siderophore receptor
D DENOEST_1194 btuB; Outer membrane cobalamin translocator K16092 btuB; vitamin B12 transporter
D DENOEST_1199 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D DENOEST_2515 conserved exported protein of unknown function K16092 btuB; vitamin B12 transporter
D DENOEST_0329 Iron complex outermembrane recepter protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_0331 yncD; putative TonB-dependent receptor YncD K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_0683 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_0761 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_0839 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_0908 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_1012 Iron complex outermembrane recepter protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_1148 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_1181 conserved exported protein of unknown function K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_1286 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_1293 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_1341 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_1440 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_2180 Iron complex outermembrane recepter protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_2398 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_2533 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_2646 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_2650 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_2694 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_2701 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_2714 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_2721 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_3180 conserved exported protein of unknown function K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_3329 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_3408 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_3409 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_3511 conserved exported protein of unknown function K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_3513 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_3516 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_3543 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_3671 conserved protein of unknown function K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_3902 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_0123 conserved exported protein of unknown function K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DENOEST_1700 Transporter K15725 czcC; outer membrane protein, heavy metal efflux system
D DENOEST_1874 Transporter K15725 czcC; outer membrane protein, heavy metal efflux system
D DENOEST_1884 czcC; Cation efflux system protein CzcC K15725 czcC; outer membrane protein, heavy metal efflux system
D DENOEST_1897 Outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system
D DENOEST_3524 Outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system
D DENOEST_0269 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D DENOEST_3890 Protein CyaE K12340 tolC; outer membrane protein
D DENOEST_3924 Channel protein TolC K12340 tolC; outer membrane protein
D DENOEST_3744 RND transporter K18139 oprM; outer membrane protein, multidrug efflux system
D DENOEST_0566 Porin K07267 oprB; porin
D DENOEST_0900 bamA; Outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D DENOEST_2786 bamB; Outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB
D DENOEST_1316 bamC; Outer membrane protein assembly factor BamC K07287 bamC; outer membrane protein assembly factor BamC
D DENOEST_1640 yfiO; putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D DENOEST_2339 bamE; Outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE
D DENOEST_2758 lptA; Lipopolysaccharide export system protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D DENOEST_2757 conserved exported protein of unknown function K11719 lptC; lipopolysaccharide export system protein LptC
D DENOEST_2844 lptD; LPS-assembly protein LptD K04744 lptD; LPS-assembly protein
D DENOEST_3607 lptE; LPS-assembly lipoprotein LptE K03643 lptE; LPS-assembly lipoprotein
D DENOEST_0312 ybeX; putative protein involved in divalent ion export K06189 corC; hemolysin (HlyC) family protein
D DENOEST_2323 Zinc transporter ZIP K16267 zipB; zinc and cadmium transporter
D DENOEST_1895 czcA; Cation efflux system protein CzcA K15726 czcA; heavy metal efflux system protein
D DENOEST_3522 czcA; Cation efflux system protein CzcA K15726 czcA; heavy metal efflux system protein
D DENOEST_1702 cusA; copper/silver efflux system, membrane component K07787 cusA; copper/silver efflux system protein
D DENOEST_1872 cusA; copper/silver efflux system, membrane component K07787 cusA; copper/silver efflux system protein
D DENOEST_0272 Multidrug transporter AcrB K18303 mexK; multidrug efflux pump
D DENOEST_3745 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D DENOEST_3937 conserved membrane protein of unknown function K03297 emrE; small multidrug resistance pump
D DENOEST_0509 sugE; multidrug efflux system protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D DENOEST_0835 conserved membrane protein of unknown function K07301 yrbG; cation:H+ antiporter
D DENOEST_3274 putative sodium:solute symporter K14393 actP; cation/acetate symporter
D DENOEST_0824 Potassium transporter K03455 KEA1_2_3; K+:H+ antiporter
D DENOEST_2754 kefB; putative K(+) efflux antiporter KefB K03455 KEA1_2_3; K+:H+ antiporter
D DENOEST_0826 Sodium/hydrogen exchanger K26730 napA; Na+:H+ antiporter
D DENOEST_0833 Potassium transporter TrkA (fragment) K03499 trkA; trk/ktr system potassium uptake protein
D DENOEST_0667 Chromate transporter K07240 chrA; chromate transporter
D DENOEST_0668 Chromate transporter K07240 chrA; chromate transporter
D DENOEST_3095 Chromate transporter K07240 chrA; chromate transporter
D DENOEST_1087 Nickel/cobalt efflux system K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D DENOEST_2422 Nickel/cobalt efflux system K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D DENOEST_0333 Cyclic nucleotide-binding protein K03321 TC.SULP; sulfate permease, SulP family
D DENOEST_2296 dctP; C4-dicarboxylate-binding periplasmic protein DctP K11688 dctP; C4-dicarboxylate-binding protein DctP
D DENOEST_2297 dctQ; C4-dicarboxylate TRAP transporter small permease protein DctQ K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D DENOEST_2298 dctM; C4-dicarboxylate TRAP transporter large permease protein DctM K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D DENOEST_1359 acr; Arsenical-resistance protein Acr3 K03325 ACR3; arsenite transporter
D DENOEST_1619 phaAB; putative K(+)/H(+) antiporter subunit A/B K05559 phaA; multicomponent K+:H+ antiporter subunit A
D DENOEST_1620 phaC; putative K(+)/H(+) antiporter subunit C K05560 phaC; multicomponent K+:H+ antiporter subunit C
D DENOEST_1621 phaD; putative K(+)/H(+) antiporter subunit D K05561 phaD; multicomponent K+:H+ antiporter subunit D
D DENOEST_1622 phaE; putative K(+)/H(+) antiporter subunit E K05562 phaE; multicomponent K+:H+ antiporter subunit E
D DENOEST_1623 phaF; putative K(+)/H(+) antiporter subunit F K05563 phaF; multicomponent K+:H+ antiporter subunit F
D DENOEST_1624 phaG; putative K(+)/H(+) antiporter subunit G K05564 phaG; multicomponent K+:H+ antiporter subunit G
D DENOEST_2614 mviN; conserved hypothetical protein; putative inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D DENOEST_3653 Transporter K13936 mdcF; malonate transporter and related proteins
D DENOEST_2461 putative permease K24180 mleP; malate permease and related proteins
D DENOEST_0817 trkD; potassium transporter K03549 kup; KUP system potassium uptake protein
D DENOEST_3557 kup; putative potassium transport system protein kup K03549 kup; KUP system potassium uptake protein
D DENOEST_1129 protein of unknown function K11250 leuE; leucine efflux protein
D DENOEST_1398 protein of unknown function K22736 VIT; vacuolar iron transporter family protein
D DENOEST_3086 ftsW; integral membrane protein involved in stabilizing FstZ ring during cell division K03588 ftsW; cell division protein FtsW
D DENOEST_0187 mneA; putative manganese exporter K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D DENOEST_2478 FTR1 family iron permease K07243 FTR; high-affinity iron transporter
D DENOEST_2475 conserved exported protein of unknown function K07230 p19; periplasmic iron binding protein
D DENOEST_0284 Energy transducer TonB K03832 tonB; periplasmic protein TonB
D DENOEST_0785 Protein TonB K03832 tonB; periplasmic protein TonB
D DENOEST_0874 protein of unknown function K03832 tonB; periplasmic protein TonB
D DENOEST_1382 protein of unknown function K03832 tonB; periplasmic protein TonB
D DENOEST_2116 Protein TonB K03832 tonB; periplasmic protein TonB
D DENOEST_2386 Protein TonB K03832 tonB; periplasmic protein TonB
D DENOEST_2520 conserved protein of unknown function K03832 tonB; periplasmic protein TonB
D DENOEST_2647 putative Gram-negative bacterial tonB protein K03832 tonB; periplasmic protein TonB
D DENOEST_3556 Protein TonB K03832 tonB; periplasmic protein TonB
D DENOEST_0829 putative OmpA family protein K03640 pal; peptidoglycan-associated lipoprotein
D DENOEST_3431 pal; Peptidoglycan-associated protein K03640 pal; peptidoglycan-associated lipoprotein
D DENOEST_3772 protein of unknown function K03646 tolA; colicin import membrane protein
D DENOEST_3430 tolB; Tol-Pal system protein TolB K03641 tolB; TolB protein
D DENOEST_3242 hppA; K(+)-insensitive pyrophosphate-energized proton pump K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D DENOEST_2130 Acetyl-CoA carboxylase carboxyltransferase subunit K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D DENOEST_3299 Cytochrome C biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D DENOEST_0795 narG; nitrate reductase 1, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_0794 narY; nitrate reductase 2 (NRZ), beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_1980 clrB; Chlorate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_0792 narV; nitrate reductase 2 (NRZ), gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D DENOEST_1979 Anaerobic dehydrogenase typically selenocysteine-containing K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D DENOEST_3312 s25dA; putative steroid C25 dehydrogenase-like alpha subunit K24713 s25dA; steroid C-25 hydroxylase alpha subunit [EC:1.17.99.10]
D DENOEST_1434 s25dA; putative steroid C25 dehydrogenase-like alpha-subunit K24713 s25dA; steroid C-25 hydroxylase alpha subunit [EC:1.17.99.10]
D DENOEST_2569 s25dA; putative steroid C25 dehydrogenase-like alpha-subunit K24713 s25dA; steroid C-25 hydroxylase alpha subunit [EC:1.17.99.10]
D DENOEST_2076 ebdA; putative ethylbenzene dehydrogenase-like alpha-subunit K24713 s25dA; steroid C-25 hydroxylase alpha subunit [EC:1.17.99.10]
D DENOEST_3334 conserved exported protein of unknown function K24713 s25dA; steroid C-25 hydroxylase alpha subunit [EC:1.17.99.10]
D DENOEST_3460 conserved exported protein of unknown function K24713 s25dA; steroid C-25 hydroxylase alpha subunit [EC:1.17.99.10]
D DENOEST_3311 serB; Selenate reductase subunit beta K24714 s25dB; steroid C-25 hydroxylase beta subunit [EC:1.17.99.10]
D DENOEST_3461 serB; Selenate reductase subunit beta K24714 s25dB; steroid C-25 hydroxylase beta subunit [EC:1.17.99.10]
D DENOEST_1435 ddhB; Dimethylsulfide dehydrogenase subunit beta K24714 s25dB; steroid C-25 hydroxylase beta subunit [EC:1.17.99.10]
D DENOEST_3335 narH; Respiratory nitrate reductase subunit beta K24714 s25dB; steroid C-25 hydroxylase beta subunit [EC:1.17.99.10]
D DENOEST_2077 narH; Respiratory nitrate reductase subunit beta K24714 s25dB; steroid C-25 hydroxylase beta subunit [EC:1.17.99.10]
D DENOEST_1436 s25dC; putative steroid C25 dehydrogenase-like gamma-subunit K24715 s25dC; steroid C-25 hydroxylase gamma subunit
D DENOEST_3336 conserved protein of unknown function K24715 s25dC; steroid C-25 hydroxylase gamma subunit
D DENOEST_3310 s25dC; Steroid C25 dehydrogenase gamma subunit K24715 s25dC; steroid C-25 hydroxylase gamma subunit
D DENOEST_3462 conserved protein of unknown function K24715 s25dC; steroid C-25 hydroxylase gamma subunit
D DENOEST_0482 emrA; multidrug efflux system K03543 emrA; membrane fusion protein, multidrug efflux system
D DENOEST_3923 Type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system
D DENOEST_1896 Efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D DENOEST_3521 Efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D DENOEST_1701 conserved protein of unknown function K07798 cusB; membrane fusion protein, copper/silver efflux system
D DENOEST_1873 Efflux transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D DENOEST_0273 Efflux transporter periplasmic adaptor subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D DENOEST_3746 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DENOEST_3889 RND transporter K07799 mdtA; membrane fusion protein, multidrug efflux system
D DENOEST_0522 ccmF; heme lyase, CcmF subunit K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D DENOEST_2813 putative membrane protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:doe02044]
D DENOEST_0269 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D DENOEST_3890 Protein CyaE K12340 tolC; outer membrane protein
D DENOEST_3924 Channel protein TolC K12340 tolC; outer membrane protein
D DENOEST_3922 aprD; Alkaline protease secretion ATP-binding protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D DENOEST_3923 Type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system
D DENOEST_3682 exported protein of unknown function K02452 gspC; general secretion pathway protein C
D DENOEST_2593 General secretion pathway protein GspD K02453 gspD; general secretion pathway protein D
D DENOEST_3683 Type II secretion system protein GspD K02453 gspD; general secretion pathway protein D
D DENOEST_1349 Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D DENOEST_2588 xcpR; Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D DENOEST_3684 gspE; general secretory pathway component, cryptic K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D DENOEST_2587 General secretion pathway protein F K02455 gspF; general secretion pathway protein F
D DENOEST_3685 xcpS; Type II secretion system protein F K02455 gspF; general secretion pathway protein F
D DENOEST_2586 gspG; pseudopilin, cryptic, general secretion pathway K02456 gspG; general secretion pathway protein G
D DENOEST_2594 General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D DENOEST_2595 xcpT; PilD-dependent protein PddA K02456 gspG; general secretion pathway protein G
D DENOEST_3686 gspG; pseudopilin, cryptic, general secretion pathway K02456 gspG; general secretion pathway protein G
D DENOEST_3687 putative Type II secretion system protein GspH K02457 gspH; general secretion pathway protein H
D DENOEST_3688 gspI; General secretion pathway protein I K02458 gspI; general secretion pathway protein I
D DENOEST_3689 putative Type II secretion system protein J K02459 gspJ; general secretion pathway protein J
D DENOEST_3690 putative Type II secretion system protein K K02460 gspK; general secretion pathway protein K
D DENOEST_3691 putative Type II secretion system protein GspL K02461 gspL; general secretion pathway protein L
D DENOEST_3692 putative Type II secretion system protein M (GspM) K02462 gspM; general secretion pathway protein M
D DENOEST_3693 conserved protein of unknown function K02463 gspN; general secretion pathway protein N
D DENOEST_0300 tapD; Leader peptidase / N-methyltransferase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D DENOEST_1033 putative Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D DENOEST_1416 conserved protein of unknown function K02650 pilA; type IV pilus assembly protein PilA
D DENOEST_0299 pilC; Type 4 fimbrial assembly protein PilC K02653 pilC; type IV pilus assembly protein PilC
D DENOEST_2747 Type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D DENOEST_0880 conserved protein of unknown function K02655 pilE; type IV pilus assembly protein PilE
D DENOEST_2791 pilF; Type IV fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF
D DENOEST_2630 Pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D DENOEST_2629 Fimbrial protein K02663 pilN; type IV pilus assembly protein PilN
D DENOEST_2628 Pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D DENOEST_2627 putative Pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D DENOEST_2626 putative Fimbrial assembly protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D DENOEST_0253 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT
D DENOEST_0255 pilU; twitching motility protein K02670 pilU; twitching motility protein PilU
D DENOEST_2302 Type IV pili twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D DENOEST_0878 Type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D DENOEST_0889 Type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D DENOEST_0877 conserved protein of unknown function K02672 pilW; type IV pilus assembly protein PilW
D DENOEST_0888 conserved protein of unknown function K02672 pilW; type IV pilus assembly protein PilW
D DENOEST_0876 conserved protein of unknown function K02673 pilX; type IV pilus assembly protein PilX
D DENOEST_0875 conserved exported protein of unknown function K02674 pilY1; type IV pilus assembly protein PilY1
D DENOEST_0886 conserved exported protein of unknown function K02674 pilY1; type IV pilus assembly protein PilY1
D DENOEST_0879 conserved protein of unknown function K08084 fimT; type IV fimbrial biogenesis protein FimT
D DENOEST_0890 conserved protein of unknown function K08084 fimT; type IV fimbrial biogenesis protein FimT
D DENOEST_0741 conserved protein of unknown function K08086 fimV; pilus assembly protein FimV
D DENOEST_0432 conserved protein of unknown function K10924 mshA; MSHA pilin protein MshA
D DENOEST_0434 conserved protein of unknown function K10926 mshC; MSHA pilin protein MshC
D DENOEST_0435 conserved protein of unknown function K10927 mshD; MSHA pilin protein MshD
D DENOEST_0429 epsE; Type II secretion system protein E K12276 mshE; MSHA biogenesis protein MshE
D DENOEST_0430 Type II secretory pathway, component PulF K12278 mshG; MSHA biogenesis protein MshG
D DENOEST_0439 conserved protein of unknown function K12279 mshI; MSHA biogenesis protein MshI
D DENOEST_0441 conserved protein of unknown function K12280 mshJ; MSHA biogenesis protein MshJ
D DENOEST_0442 conserved protein of unknown function K12281 mshK; MSHA biogenesis protein MshK
D DENOEST_0443 General secretion pathway protein GspD K12282 mshL; MSHA biogenesis protein MshL
D DENOEST_2744 Pilus (MSHA type) biogenesis protein MshL K12282 mshL; MSHA biogenesis protein MshL
D DENOEST_0444 AAA family ATPase K12283 mshM; MSHA biogenesis protein MshM
D DENOEST_0445 conserved protein of unknown function K12284 mshN; MSHA biogenesis protein MshN
D DENOEST_0436 conserved protein of unknown function K12285 mshO; MSHA biogenesis protein MshO
D DENOEST_0437 conserved protein of unknown function K12286 mshP; MSHA biogenesis protein MshP
D DENOEST_0438 conserved exported protein of unknown function K12287 mshQ; MSHA biogenesis protein MshQ
D DENOEST_0250 YggT family protein K02221 yggT; YggT family protein
D DENOEST_2228 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D DENOEST_3397 flhA; putative flagellar export pore protein K02400 flhA; flagellar biosynthesis protein FlhA
D DENOEST_3398 flhB; flagellar export pore protein K02401 flhB; flagellar biosynthesis protein FlhB
D DENOEST_3355 flhB; Flagellar related protein K04061 flhB2; flagellar biosynthesis protein
D DENOEST_3363 fliF; flagellar basal-body MS-ring and collar protein K02409 fliF; flagellar M-ring protein FliF
D DENOEST_3365 conserved protein of unknown function K02411 fliH; flagellar assembly protein FliH
D DENOEST_3366 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D DENOEST_3372 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN
D DENOEST_3373 Flagellar protein K02418 fliO; flagellar protein FliO/FliZ
D DENOEST_3374 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D DENOEST_3375 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ
D DENOEST_3376 fliR; flagellar export pore protein K02421 fliR; flagellar biosynthesis protein FliR
D DENOEST_1803 conserved membrane protein of unknown function K12056 traG; conjugal transfer mating pair stabilization protein TraG
D DENOEST_1919 conserved membrane protein of unknown function K12056 traG; conjugal transfer mating pair stabilization protein TraG
D DENOEST_P0026 TraG domain protein K12056 traG; conjugal transfer mating pair stabilization protein TraG
D DENOEST_P0123 TraG domain protein K12056 traG; conjugal transfer mating pair stabilization protein TraG
D DENOEST_1805 conserved exported protein of unknown function K12057 traF; conjugal transfer pilus assembly protein TraF
D DENOEST_1921 conserved exported protein of unknown function K12057 traF; conjugal transfer pilus assembly protein TraF
D DENOEST_P0028 TraF-like protein K12057 traF; conjugal transfer pilus assembly protein TraF
D DENOEST_P0125 TraF-like protein K12057 traF; conjugal transfer pilus assembly protein TraF
D DENOEST_1775 Conjugal transfer mating pair stabilization protein TraN K12058 traN; conjugal transfer mating pair stabilization protein TraN
D DENOEST_1904 Conjugal transfer mating pair stabilization protein TraN K12058 traN; conjugal transfer mating pair stabilization protein TraN
D DENOEST_P0030 conserved protein of unknown function K12058 traN; conjugal transfer mating pair stabilization protein TraN
D DENOEST_P0127 Mating pair stabilisation TraN (modular protein) K12058 traN; conjugal transfer mating pair stabilization protein TraN
D DENOEST_1777 Type-F conjugative transfer system pilin assembly protein TrbC K12059 trbC; conjugal transfer pilus assembly protein TrbC
D DENOEST_1906 Type-F conjugative transfer system pilin assembly protein TrbC K12059 trbC; conjugal transfer pilus assembly protein TrbC
D DENOEST_P0032 Conjugal transfer protein TrbC K12059 trbC; conjugal transfer pilus assembly protein TrbC
D DENOEST_P0128 Type-F conjugative transfer system pilin assembly protein TrbC K12059 trbC; conjugal transfer pilus assembly protein TrbC
D DENOEST_1778 Conjugal transfer protein K12060 traU; conjugal transfer pilus assembly protein TraU
D DENOEST_1907 Conjugal transfer protein K12060 traU; conjugal transfer pilus assembly protein TraU
D DENOEST_P0033 TraU family protein (fragment) K12060 traU; conjugal transfer pilus assembly protein TraU
D DENOEST_P0034 protein of unknown function K12060 traU; conjugal transfer pilus assembly protein TraU
D DENOEST_P0129 TraU family protein K12060 traU; conjugal transfer pilus assembly protein TraU
D DENOEST_1779 Type-F conjugative transfer system protein TraW K12061 traW; conjugal transfer pilus assembly protein TraW
D DENOEST_1908 Type-F conjugative transfer system protein TraW K12061 traW; conjugal transfer pilus assembly protein TraW
D DENOEST_P0036 Conjugal transfer pilus assembly protein TraW K12061 traW; conjugal transfer pilus assembly protein TraW
D DENOEST_P0130 Conjugal transfer pilus assembly protein TraW K12061 traW; conjugal transfer pilus assembly protein TraW
D DENOEST_1787 conserved protein of unknown function K12062 trbI; conjugal transfer pilin signal peptidase TrbI
D DENOEST_1915 conserved protein of unknown function K12062 trbI; conjugal transfer pilin signal peptidase TrbI
D DENOEST_P0037 Peptidase S26 K12062 trbI; conjugal transfer pilin signal peptidase TrbI
D DENOEST_P0131 Peptidase S26 K12062 trbI; conjugal transfer pilin signal peptidase TrbI
D DENOEST_1807 conserved protein of unknown function K12063 traC; conjugal transfer ATP-binding protein TraC
D DENOEST_1923 conserved protein of unknown function K12063 traC; conjugal transfer ATP-binding protein TraC
D DENOEST_P0040 Type-IV secretion system protein TraC (fragment) K12063 traC; conjugal transfer ATP-binding protein TraC
D DENOEST_P0133 Type-IV secretion system protein TraC (fragment) K12063 traC; conjugal transfer ATP-binding protein TraC
D DENOEST_1808 Type IV conjugative transfer system protein TraV K12064 traV; conjugal transfer pilus assembly protein TraV
D DENOEST_1924 conserved exported protein of unknown function K12064 traV; conjugal transfer pilus assembly protein TraV
D DENOEST_P0041 Conjugal transfer protein TraV K12064 traV; conjugal transfer pilus assembly protein TraV
D DENOEST_P0135 Conjugal transfer protein TraV K12064 traV; conjugal transfer pilus assembly protein TraV
D DENOEST_1810 TraB pilus assembly K12065 traB; conjugal transfer pilus assembly protein TraB
D DENOEST_1926 Conjugal transfer pilus assembly protein TraB K12065 traB; conjugal transfer pilus assembly protein TraB
D DENOEST_P0043 conserved protein of unknown function K12065 traB; conjugal transfer pilus assembly protein TraB
D DENOEST_P0137 TraB pilus assembly family protein K12065 traB; conjugal transfer pilus assembly protein TraB
D DENOEST_1811 conserved exported protein of unknown function K12066 traK; conjugal transfer pilus assembly protein TraK
D DENOEST_1927 conserved protein of unknown function K12066 traK; conjugal transfer pilus assembly protein TraK
D DENOEST_P0045 Conjugal transfer protein TraK K12066 traK; conjugal transfer pilus assembly protein TraK
D DENOEST_P0138 Conjugal transfer protein TraK K12066 traK; conjugal transfer pilus assembly protein TraK
D DENOEST_1812 Plasmid-like conjugative transfer protein TraE K12067 traE; conjugal transfer pilus assembly protein TraE
D DENOEST_1928 conserved protein of unknown function K12067 traE; conjugal transfer pilus assembly protein TraE
D DENOEST_P0046 conserved protein of unknown function K12067 traE; conjugal transfer pilus assembly protein TraE
D DENOEST_P0139 Conjugal transfer protein TraE K12067 traE; conjugal transfer pilus assembly protein TraE
D DENOEST_1813 conserved protein of unknown function K12068 traL; conjugal transfer pilus assembly protein TraL
D DENOEST_1929 conserved protein of unknown function K12068 traL; conjugal transfer pilus assembly protein TraL
D DENOEST_P0049 protein of unknown function K12068 traL; conjugal transfer pilus assembly protein TraL
D DENOEST_P0140 Conjugal transfer pilus assembly protein TraL K12068 traL; conjugal transfer pilus assembly protein TraL
D DENOEST_1814 conserved membrane protein of unknown function K12069 traA; conjugal transfer pilus assembly protein TraA
D DENOEST_1930 conserved membrane protein of unknown function K12069 traA; conjugal transfer pilus assembly protein TraA
D DENOEST_P0050 conserved membrane protein of unknown function K12069 traA; conjugal transfer pilus assembly protein TraA
D DENOEST_P0141 conserved membrane protein of unknown function K12069 traA; conjugal transfer pilus assembly protein TraA
D DENOEST_1786 Relaxase K12070 traI; conjugal transfer pilus assembly protein TraI
D DENOEST_1913 Integrating conjugative element relaxase, PFGI-1 class K12070 traI; conjugal transfer pilus assembly protein TraI
D DENOEST_1819 Type IV conjugative transfer system protein TraD K12071 traD; conjugal transfer pilus assembly protein TraD
D DENOEST_1945 Conjugal transfer protein TraD K12071 traD; conjugal transfer pilus assembly protein TraD
D DENOEST_1809 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DENOEST_1925 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DENOEST_3615 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DENOEST_P0042 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DENOEST_P0136 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DENOEST_1804 TraH family protein K12072 traH; conjugative transfer pilus assembly protein TraH
D DENOEST_1920 conserved exported protein of unknown function K12072 traH; conjugative transfer pilus assembly protein TraH
D DENOEST_P0027 Conjugal transfer protein TraH (fragment) K12072 traH; conjugative transfer pilus assembly protein TraH
D DENOEST_P0124 Conjugal transfer protein TraH K12072 traH; conjugative transfer pilus assembly protein TraH
D DENOEST_3075 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DENOEST_0425 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D DENOEST_2881 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D DENOEST_3150 secE; Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D DENOEST_2882 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D DENOEST_0948 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D DENOEST_3117 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D DENOEST_0297 ffh; 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DENOEST_3644 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D DENOEST_2879 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D DENOEST_3823 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DENOEST_2601 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D DENOEST_2600 Sec-independent protein translocase protein TatB (fragment) K03117 tatB; sec-independent protein translocase protein TatB
D DENOEST_2599 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:doe02042]
D DENOEST_1079 conserved membrane protein of unknown function K03699 tlyC; magnesium and cobalt exporter, CNNM family
D DENOEST_1618 conserved protein of unknown function K03699 tlyC; magnesium and cobalt exporter, CNNM family
D DENOEST_1037 Hemolysin-3 K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:doe02022]
D DENOEST_1580 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D DENOEST_1579 phoB; DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D DENOEST_1395 conserved exported protein of unknown function K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D DENOEST_1396 ompR; two-component response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D DENOEST_1696 pcoS; putative sensor protein PcoS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DENOEST_1886 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DENOEST_1697 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D DENOEST_1885 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D DENOEST_0815 Histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D DENOEST_0816 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D DENOEST_2822 Signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D DENOEST_2823 qseB; DNA-binding response regulator in two-component regulatory system with QseC K02483 K02483; two-component system, OmpR family, response regulator
D DENOEST_1750 czcR; Transcriptional activator protein CzcR K02483 K02483; two-component system, OmpR family, response regulator
D DENOEST_3257 tctD; Transcriptional regulatory protein tctD K02483 K02483; two-component system, OmpR family, response regulator
D DENOEST_0791 GAF:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase, dimerization and phosphoacceptor region K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D DENOEST_0790 narL; DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D DENOEST_0706 Histidine kinase (fragment) K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D DENOEST_0708 DNA-binding response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D DENOEST_0881 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D DENOEST_P0053 DNA-binding response regulator (modular protein) K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D DENOEST_P0144 protein of unknown function K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D DENOEST_3066 protein of unknown function K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D DENOEST_3065 algR; Positive alginate biosynthesis regulatory protein K08083 algR; two-component system, LytTR family, response regulator AlgR
D DENOEST_3912 PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D DENOEST_3911 glnG; fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator; sigma54 interaction protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D DENOEST_3626 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D DENOEST_3625 Transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D DENOEST_0514 atoC; Regulatory protein AtoC K07714 atoC; two-component system, NtrC family, response regulator AtoC
D DENOEST_1990 atoC; fused response regulator of ato opeon, in two-component system with AtoS: response regulator; sigma54 interaction protein K07714 atoC; two-component system, NtrC family, response regulator AtoC
D DENOEST_3251 conserved membrane protein of unknown function K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D DENOEST_3250 pilR; Type 4 fimbriae expression regulatory protein PilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D DENOEST_1068 conserved protein of unknown function K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D DENOEST_1066 yfhA; putative DNA-binding response regulator in two-component system K07715 glrR; two-component system, NtrC family, response regulator GlrR
D DENOEST_3630 hoxX; Hydrogenase maturation factor HoxX K19640 hypX; putative two-component system protein, hydrogenase maturation factor HypX/HoxX
D DENOEST_0371 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_0515 Two-component sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_0531 Signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2164 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2166 putative Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2172 conserved protein of unknown function K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2247 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2977 conserved protein of unknown function K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_3869 conserved protein of unknown function K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D DENOEST_2289 Hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_2263 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_3399 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_2260 Two-component system sensor histidine kinase/response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DENOEST_3401 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DENOEST_2268 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DENOEST_2291 cheB; Chemotaxis response regulator protein-glutamate methylesterase 4 K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DENOEST_3402 cheV; Chemotaxis protein CheV-like K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DENOEST_3403 Fused signal transduction protein/response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DENOEST_2312 cph1; Phytochrome-like protein cph1 K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D DENOEST_2295 PAS domain-containing sensor histidine kinase K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D DENOEST_2294 dctR; C4-dicarboxylate transport transcriptional regulatory protein DctR K11712 dctR; two-component system, LuxR family, response regulator DctR
D DENOEST_3362 Histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D DENOEST_3361 zraR; Transcriptional regulatory protein ZraR K10943 flrC; two-component system, response regulator FlrC
D DENOEST_2640 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D DENOEST_2641 regA; Photosynthetic apparatus regulatory protein RegA K15012 regA; two-component system, response regulator RegA
D DENOEST_3155 Histidine kinase K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3]
D DENOEST_0858 putative response regulator antiterminator K07183 nasT; two-component system, response regulator / RNA-binding antiterminator
D DENOEST_0334 PAS domain S-box-containing protein (modular protein) K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:doe02035]
D DENOEST_2289 Hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_2263 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_3399 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DENOEST_2265 Purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D DENOEST_2283 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D DENOEST_2285 Chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D DENOEST_2274 cheD; putative chemoreceptor glutamine deamidase CheD 2 K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D DENOEST_2267 cheR; Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D DENOEST_2284 conserved protein of unknown function K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D DENOEST_2268 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DENOEST_2291 cheB; Chemotaxis response regulator protein-glutamate methylesterase 4 K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DENOEST_2260 Two-component system sensor histidine kinase/response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DENOEST_3401 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DENOEST_3400 Protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D DENOEST_3402 cheV; Chemotaxis protein CheV-like K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DENOEST_3403 Fused signal transduction protein/response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DENOEST_1224 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_0523 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_0537 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_0980 Chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_1560 putative Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_1662 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2261 Chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2264 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2266 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2521 putative Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_2821 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3271 conserved exported protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3492 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3584 conserved exported protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3737 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D DENOEST_3750 aer; Aerotaxis receptor K03776 aer; aerotaxis receptor
D DENOEST_2253 conserved protein of unknown function K03776 aer; aerotaxis receptor
D DENOEST_3365 conserved protein of unknown function K02411 fliH; flagellar assembly protein FliH
D DENOEST_3366 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D DENOEST_3368 Flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D DENOEST_3373 Flagellar protein K02418 fliO; flagellar protein FliO/FliZ
D DENOEST_3374 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D DENOEST_3375 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ
D DENOEST_3376 fliR; flagellar export pore protein K02421 fliR; flagellar biosynthesis protein FliR
D DENOEST_3397 flhA; putative flagellar export pore protein K02400 flhA; flagellar biosynthesis protein FlhA
D DENOEST_3398 flhB; flagellar export pore protein K02401 flhB; flagellar biosynthesis protein FlhB
D DENOEST_3364 fliG; flagellar motor switching and energizing component K02410 fliG; flagellar motor switch protein FliG
D DENOEST_3371 fliM; flagellar motor switching and energizing component K02416 fliM; flagellar motor switch protein FliM
D DENOEST_3372 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN
D DENOEST_3363 fliF; flagellar basal-body MS-ring and collar protein K02409 fliF; flagellar M-ring protein FliF
D DENOEST_3381 flgI; flagellar basal body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D DENOEST_3389 Flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D DENOEST_3382 flgH; flagellar protein of basal-body outer-membrane L ring K02393 flgH; flagellar L-ring protein FlgH
D DENOEST_3370 Flagellar protein FliL K02415 fliL; flagellar protein FliL
D DENOEST_3360 fliE; Flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D DENOEST_3369 conserved protein of unknown function K02414 fliK; flagellar hook-length control protein FliK
D DENOEST_1858 flgB; putative proximal rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D DENOEST_3388 flgB; Flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D DENOEST_3387 flgC; flagellar component of cell-proximal portion of basal-body rod K02388 flgC; flagellar basal-body rod protein FlgC
D DENOEST_3386 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D DENOEST_3384 flgF; flagellar component of cell-proximal portion of basal-body rod K02391 flgF; flagellar basal-body rod protein FlgF
D DENOEST_3383 flgG; flagellar component of cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG
D DENOEST_3380 flgJ; muramidase K02395 flgJ; peptidoglycan hydrolase FlgJ
D DENOEST_3385 Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D DENOEST_3379 Flagellar hook-associated protein 1 (modular protein) K02396 flgK; flagellar hook-associated protein 1
D DENOEST_3378 conserved protein of unknown function K02397 flgL; flagellar hook-associated protein 3 FlgL
D DENOEST_3391 conserved protein of unknown function K02399 flgN; flagellar biosynthesis protein FlgN
D DENOEST_3348 putative Flagellin K02406 fliC; flagellin
D DENOEST_1075 Flagellin K02406 fliC; flagellin
D DENOEST_3350 putative Flagellin K02406 fliC; flagellin
D DENOEST_3351 Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D DENOEST_3352 fliS; Flagellar secretion chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D DENOEST_3353 FliT flagellar protein K02423 fliT; flagellar protein FliT
D DENOEST_3539 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D DENOEST_3538 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D DENOEST_3394 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D DENOEST_3393 motC; Flagellar motor protein K02556 motA; chemotaxis protein MotA
D DENOEST_3405 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA
D DENOEST_3392 Flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D DENOEST_3404 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB
D DENOEST_3362 Histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D DENOEST_3361 zraR; Transcriptional regulatory protein ZraR K10943 flrC; two-component system, response regulator FlrC
D DENOEST_0363 fliW; Flagellar assembly factor FliW K13626 fliW; flagellar assembly factor FliW
D DENOEST_3390 Flagellar biosynthesis anti-sigma factor FlgM (fragment) K02398 flgM; negative regulator of flagellin synthesis FlgM
D DENOEST_3349 Flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG
D DENOEST_3396 Flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D DENOEST_3395 conserved protein of unknown function K04562 flhG; flagellar biosynthesis protein FlhG
D DENOEST_3250 pilR; Type 4 fimbriae expression regulatory protein PilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D DENOEST_3251 conserved membrane protein of unknown function K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D DENOEST_0253 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT
D DENOEST_0255 pilU; twitching motility protein K02670 pilU; twitching motility protein PilU
D DENOEST_2302 Type IV pili twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D DENOEST_1416 conserved protein of unknown function K02650 pilA; type IV pilus assembly protein PilA
D DENOEST_0299 pilC; Type 4 fimbrial assembly protein PilC K02653 pilC; type IV pilus assembly protein PilC
D DENOEST_2747 Type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D DENOEST_0300 tapD; Leader peptidase / N-methyltransferase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D DENOEST_1033 putative Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D DENOEST_2791 pilF; Type IV fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF
D DENOEST_2626 putative Fimbrial assembly protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D DENOEST_2627 putative Pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D DENOEST_2628 Pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D DENOEST_2629 Fimbrial protein K02663 pilN; type IV pilus assembly protein PilN
D DENOEST_2630 Pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D DENOEST_0878 Type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D DENOEST_0889 Type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D DENOEST_0877 conserved protein of unknown function K02672 pilW; type IV pilus assembly protein PilW
D DENOEST_0888 conserved protein of unknown function K02672 pilW; type IV pilus assembly protein PilW
D DENOEST_0876 conserved protein of unknown function K02673 pilX; type IV pilus assembly protein PilX
D DENOEST_0875 conserved exported protein of unknown function K02674 pilY1; type IV pilus assembly protein PilY1
D DENOEST_0886 conserved exported protein of unknown function K02674 pilY1; type IV pilus assembly protein PilY1
D DENOEST_0880 conserved protein of unknown function K02655 pilE; type IV pilus assembly protein PilE
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:doe04812]
D DENOEST_0810 MEMO1 family protein A2045_15415 K06990 MEMO1; MEMO1 family protein
D DENOEST_0573 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D DENOEST_1825 StbA family protein K18640 parM; plasmid segregation protein ParM
D DENOEST_1966 Plasmid stability protein StbA K18640 parM; plasmid segregation protein ParM
D DENOEST_3079 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D DENOEST_3080 ftsA; ATP-binding cell division protein involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA
D DENOEST_2866 minC; putative septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D DENOEST_2865 minD; cell division inhibitor, a membrane ATPase,activates minC K03609 minD; septum site-determining protein MinD
D DENOEST_2864 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D DENOEST_2610 Chromosome partitioning protein K03496 parA; chromosome partitioning protein
D DENOEST_3596 Partition-related protein K03496 parA; chromosome partitioning protein
D DENOEST_3598 Cobyric acid synthase K03496 parA; chromosome partitioning protein
D DENOEST_3827 conserved protein of unknown function K03496 parA; chromosome partitioning protein
D DENOEST_P0096 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D DENOEST_1845 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DENOEST_2013 conserved protein of unknown function K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DENOEST_3828 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DENOEST_P0095 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:doe04147]
D DENOEST_1305 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D DENOEST_2314 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DENOEST_1285 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_2543 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_3281 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DENOEST_3280 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D DENOEST_3279 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DENOEST_3592 ahpC; Alkyl hydroperoxide reductase C K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D DENOEST_3765 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DENOEST_2347 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK
D DENOEST_3582 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DENOEST_2026 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D DENOEST_3139 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D DENOEST_3151 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D DENOEST_3874 ATPase K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha [EC:7.2.2.13]
D DENOEST_2233 hit; Protein hit K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D DENOEST_2602 hitA; Protein HitA K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D DENOEST_0733 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DENOEST_1389 putative O-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DENOEST_0723 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1052 fadA; putative enzyme K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1371 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1375 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2045 fadA; Steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2574 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_2894 conserved protein of unknown function K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_3763 pcaF; Beta-ketoadipyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DENOEST_1185 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D DENOEST_3410 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D DENOEST_3239 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D DENOEST_3067 argH; argininosuccinate lyase (Arginosuccinase) (ASAL) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DENOEST_0716 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DENOEST_0661 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DENOEST_3577 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D DENOEST_3447 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D DENOEST_3283 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D DENOEST_2806 Phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DENOEST_2856 purH; bifunctional protein [Includes: phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DENOEST_0725 Peptidase M48 K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D DENOEST_1535 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2139 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DENOEST_2095 putative Electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit
D DENOEST_2104 protein of unknown function K03522 fixB; electron transfer flavoprotein alpha subunit
D DENOEST_2106 putative electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like (fragment) K03522 fixB; electron transfer flavoprotein alpha subunit
D DENOEST_0109 etfA; electron transfer flavoprotein alpha-subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D DENOEST_1505 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D DENOEST_0947 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DENOEST_0421 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:doe02048]
D DENOEST_0921 ygbT; conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D DENOEST_0922 ygbF; hypothetical protein K09951 cas2; CRISPR-associated protein Cas2
D DENOEST_0913 CRISPR-associated helicase/endonuclease Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D DENOEST_P0016 conserved protein of unknown function K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D DENOEST_P0115 conserved protein of unknown function K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D DENOEST_0914 putative CRISPR system Cascade subunit CasA K19123 casA; CRISPR system Cascade subunit CasA
D DENOEST_0915 conserved protein of unknown function K19046 casB; CRISPR system Cascade subunit CasB
D DENOEST_0916 CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E K19124 casC; CRISPR system Cascade subunit CasC
D DENOEST_0917 conserved protein of unknown function K19125 casD; CRISPR system Cascade subunit CasD
D DENOEST_0918 putative CRISPR-associated protein, Cse3 family K19126 casE; CRISPR system Cascade subunit CasE
D DENOEST_2152 conserved protein of unknown function K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D DENOEST_3000 Type I restriction-modification system R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D DENOEST_2154 Restriction endonuclease subunit S (fragment) K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D DENOEST_3004 conserved protein of unknown function K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D DENOEST_2153 conserved protein of unknown function K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D DENOEST_3003 putative Site-specific DNA-methyltransferase (adenine-specific) K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D DENOEST_1706 Type II restriction endonuclease K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4]
D DENOEST_1864 Type II restriction endonuclease K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4]
D DENOEST_0275 Eco57I restriction endonuclease K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D DENOEST_P0083 conserved protein of unknown function K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_P0179 conserved protein of unknown function K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_P0180 C-5 cytosine-specific DNA methylase (fragment) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DENOEST_3972 conserved protein of unknown function K07448 mrr; restriction system protein
D DENOEST_0045 conserved protein of unknown function K07448 mrr; restriction system protein
D DENOEST_3848 Addiction module toxin, RelE/StbE family K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D DENOEST_P0091 yafQ; toxin of the YafQ-DinJ toxin-antitoxin system K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D DENOEST_3847 Translation repressor RelB K07473 dinJ; DNA-damage-inducible protein J
D DENOEST_P0092 putative addiction module antitoxin component DinJ K07473 dinJ; DNA-damage-inducible protein J
D DENOEST_2772 yoeB; toxin of the YoeB-YefM toxin-antitoxin system K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D DENOEST_2773 yefM; antitoxin of the YoeB-YefM toxin-antitoxin system K19159 yefM; antitoxin YefM
D DENOEST_1771 Phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DENOEST_1900 Phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DENOEST_3618 conserved protein of unknown function K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DENOEST_0104 putative kinase Y4mE K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DENOEST_0105 Uncharacterized HTH-type transcriptional regulator y4mF K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D DENOEST_3995 conserved protein of unknown function K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D DENOEST_0069 conserved protein of unknown function K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D DENOEST_0400 conserved protein of unknown function K07334 higB-1; toxin HigB-1
D DENOEST_3994 Transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D DENOEST_0068 Transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D DENOEST_3079 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D DENOEST_0573 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D DENOEST_3358 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DENOEST_3357 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DENOEST_0634 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DENOEST_2210 conserved protein of unknown function K19168 cptA; toxin CptA
D DENOEST_2143 conserved protein of unknown function K09159 cptB; antitoxin CptB
D DENOEST_1543 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DENOEST_1544 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:doe01504]
D DENOEST_1696 pcoS; putative sensor protein PcoS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DENOEST_1886 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DENOEST_1697 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D DENOEST_1885 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D DENOEST_3746 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DENOEST_3745 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D DENOEST_3744 RND transporter K18139 oprM; outer membrane protein, multidrug efflux system
D DENOEST_0273 Efflux transporter periplasmic adaptor subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D DENOEST_0272 Multidrug transporter AcrB K18303 mexK; multidrug efflux pump
D DENOEST_0269 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D DENOEST_3890 Protein CyaE K12340 tolC; outer membrane protein
D DENOEST_3924 Channel protein TolC K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:doe03100]
D DENOEST_TRNA33 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA12 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA35 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA38 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA14 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DENOEST_TRNA20 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DENOEST_TRNA44 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DENOEST_TRNA11 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DENOEST_TRNA50 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DENOEST_TRNA42 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DENOEST_TRNA6 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DENOEST_TRNA9 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D DENOEST_TRNA28 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DENOEST_TRNA13 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DENOEST_TRNA15 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DENOEST_TRNA8 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DENOEST_TRNA23 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DENOEST_TRNA30 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DENOEST_TRNA43 tRNA-His K14226 tRNA-His; tRNA His
D DENOEST_TRNA1 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DENOEST_TRNA34 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DENOEST_TRNA37 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DENOEST_TRNA36 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DENOEST_TRNA48 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DENOEST_TRNA4 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DENOEST_TRNA46 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DENOEST_TRNA7 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DENOEST_TRNA25 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DENOEST_TRNA26 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DENOEST_TRNA19 tRNA-Met K14230 tRNA-Met; tRNA Met
D DENOEST_TRNA24 tRNA-Met K14230 tRNA-Met; tRNA Met
D DENOEST_TRNA27 tRNA-Met K14230 tRNA-Met; tRNA Met
D DENOEST_TRNA40 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D DENOEST_TRNA49 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DENOEST_TRNA18 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DENOEST_TRNA22 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DENOEST_TRNA17 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DENOEST_TRNA45 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DENOEST_TRNA41 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DENOEST_TRNA47 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DENOEST_TRNA3 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DENOEST_TRNA5 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DENOEST_TRNA31 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DENOEST_TRNA32 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D DENOEST_TRNA29 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D DENOEST_TRNA39 tRNA-Val K14237 tRNA-Val; tRNA Val
D DENOEST_TRNA16 tRNA-Val K14237 tRNA-Val; tRNA Val
D DENOEST_TRNA10 tRNA-Val K14237 tRNA-Val; tRNA Val
D DENOEST_TRNA21 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D DENOEST_RRNA6 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DENOEST_MISCRNA10 Bacteria_small_SRP K01983 ffs; SRP RNA
D DENOEST_MISCRNA1 RNaseP_bact_a K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D DENOEST_2709 acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D DENOEST_2708 pdhB; Pyruvate dehydrogenase E1 component, beta subunit K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D DENOEST_0328 conserved exported protein of unknown function K05889 pvadh; polyvinyl alcohol dehydrogenase (cytochrome) [EC:1.1.2.6]
D DENOEST_1442 conserved exported protein of unknown function K05889 pvadh; polyvinyl alcohol dehydrogenase (cytochrome) [EC:1.1.2.6]
D DENOEST_0490 qbdA; Quinohemoprotein alcohol dehydrogenase ADH IIB K17760 qheDH; quinohemoprotein ethanol dehydrogenase [EC:1.1.9.1]
D DENOEST_2039 qbdA; Quinohemoprotein alcohol dehydrogenase ADH IIB K17760 qheDH; quinohemoprotein ethanol dehydrogenase [EC:1.1.9.1]
D DENOEST_3548 qbdA; Quinohemoprotein alcohol dehydrogenase ADH IIB K17760 qheDH; quinohemoprotein ethanol dehydrogenase [EC:1.1.9.1]
D DENOEST_3675 qbdA; Quinohemoprotein alcohol dehydrogenase ADH IIB K17760 qheDH; quinohemoprotein ethanol dehydrogenase [EC:1.1.9.1]
D DENOEST_2098 conserved protein of unknown function K00540 fqr; F420H(2)-dependent quinone reductase [EC:1.1.98.-]
D DENOEST_2571 ddn; Deazaflavin-dependent nitroreductase K00540 fqr; F420H(2)-dependent quinone reductase [EC:1.1.98.-]
D DENOEST_2040 calB; putative coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D DENOEST_3319 calB; putative coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D DENOEST_1222 cutC; Glyceraldehyde dehydrogenase small chain K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D DENOEST_1241 cutS; Carbon monoxide dehydrogenase small chain K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D DENOEST_1221 conserved protein of unknown function K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]
D DENOEST_1242 conserved protein of unknown function K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]
D DENOEST_0945 Indolepyruvate ferredoxin oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
D DENOEST_1282 iorA; Isoquinoline 1-oxidoreductase subunit alpha K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D DENOEST_2037 iorA; Isoquinoline 1-oxidoreductase subunit alpha K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D DENOEST_1281 Isoquinoline 1-oxidoreductase K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D DENOEST_2036 Twin-arginine translocation pathway signal protein K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D DENOEST_2052 fadE; Acyl-CoA dehydrogenase FadE26 K22818 fadE26; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase alpha subunit [EC:1.3.99.-]
D DENOEST_2055 Acyl-CoA dehydrogenase K22819 fadE27; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase beta subunit [EC:1.3.99.-]
D DENOEST_1269 fno; F420-dependent NADP reductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D DENOEST_2969 fno; F420-dependent NADP reductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D DENOEST_2227 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D DENOEST_1587 Quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D DENOEST_3317 Alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D DENOEST_3451 Zinc-binding dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D DENOEST_0148 azoR; FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D DENOEST_1537 msrA; Peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D DENOEST_1323 msrB; methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D DENOEST_0450 yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D DENOEST_1972 yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D DENOEST_1481 bcp; Peroxiredoxin Bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D DENOEST_1738 bcp; putative peroxiredoxin bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D DENOEST_2136 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D DENOEST_2272 hoxH; NAD-reducing hydrogenase HoxS subunit beta K00436 hoxH; NAD-reducing hydrogenase large subunit [EC:1.12.1.2]
D DENOEST_2269 hoxF; NAD-reducing hydrogenase HoxS subunit alpha K18005 hoxF; [NiFe] hydrogenase diaphorase moiety large subunit [EC:1.12.1.2]
D DENOEST_2270 hoxU; NAD-reducing hydrogenase HoxS subunit gamma K18006 hoxU; [NiFe] hydrogenase diaphorase moiety small subunit [EC:1.12.1.2]
D DENOEST_2271 hoxY; NAD-reducing hydrogenase HoxS subunit delta K18007 hoxY; NAD-reducing hydrogenase small subunit [EC:1.12.1.2]
D DENOEST_0149 putative Quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D DENOEST_1978 cld; Chlorite dismutase K09162 cld; chlorite dismutase [EC:1.13.11.49]
D DENOEST_1793 merA; Mercuric reductase K00520 merA; mercuric reductase [EC:1.16.1.1]
D DENOEST_1303 conserved protein of unknown function K21677 hpnE; hydroxysqualene dehydroxylase [EC:1.17.8.1]
D DENOEST_3658 Carbon monoxide dehydrogenase K24716 atcA; 3-oxo-Delta1-steroid hydratase/dehydrogenase large subunit [EC:1.17.99.11]
D DENOEST_2108 Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein K24716 atcA; 3-oxo-Delta1-steroid hydratase/dehydrogenase large subunit [EC:1.17.99.11]
D DENOEST_2111 cutM; Carbon monoxide dehydrogenase medium chain K24717 atcB; 3-oxo-Delta1-steroid hydratase/dehydrogenase medium subunit [EC:1.17.99.11]
D DENOEST_2088 Carbon monoxide dehydrogenase medium chain (fragment) K24717 atcB; 3-oxo-Delta1-steroid hydratase/dehydrogenase medium subunit [EC:1.17.99.11]
D DENOEST_2087 protein of unknown function K24717 atcB; 3-oxo-Delta1-steroid hydratase/dehydrogenase medium subunit [EC:1.17.99.11]
D DENOEST_2089 cutS; Carbon monoxide dehydrogenase small chain K24718 atcC; 3-oxo-Delta1-steroid hydratase/dehydrogenase small subunit [EC:1.17.99.11]
D DENOEST_2110 cutS; Carbon monoxide dehydrogenase small chain K24718 atcC; 3-oxo-Delta1-steroid hydratase/dehydrogenase small subunit [EC:1.17.99.11]
D DENOEST_1344 fpr; ferredoxin--NADP+ reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D DENOEST_1358 arsC; Arsenate reductase 1 K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D DENOEST_0808 conserved protein of unknown function K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D DENOEST_0633 NADH dehydrogenase (Quinone) K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D DENOEST_0631 hyfE; Hydrogenase-4 component E K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D DENOEST_0630 hyfF; Hydrogenase-4 component F homolog K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D DENOEST_0271 pcm; Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D DENOEST_1307 pcm; L-isoaspartate protein carboxylmethyltransferase type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D DENOEST_2906 3-oxoacyl-(Acyl carrier protein) synthase K21378 nphT7; acetoacetyl-CoA synthase [EC:2.3.1.194]
D DENOEST_0313 lnt; Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D DENOEST_1665 aat; leucyl/phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D DENOEST_1311 conserved membrane protein of unknown function K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D DENOEST_1664 bpt; Aspartate/glutamate leucyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D DENOEST_3526 lgt; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D DENOEST_0115 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D DENOEST_0910 putative phosphoenolpyruvate synthase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D DENOEST_3287 Polyphosphate:AMP phosphotransferase K23753 ppk2; AMP-polyphosphate phosphotransferase [EC:2.7.4.33]
D DENOEST_0624 glnE; Glutamine synthetase adenylyl-L-tyrosine phosphorylase / Glutamine synthetase adenylyl transferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D DENOEST_1002 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D DENOEST_2766 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D DENOEST_3725 RNA-dependent DNA polymerase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D DENOEST_0599 aceK; Isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D DENOEST_3786 hprK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D DENOEST_0413 conserved protein of unknown function K22905 stf3; omega-hydroxy-beta-dihydromenaquinone-9 sulfotransferase [EC:2.8.2.40]
D DENOEST_1331 Succinyl-CoA--D-citramalate CoA-transferase K18313 sct; succinyl-CoA---D-citramalate CoA-transferase [EC:2.8.3.20]
D DENOEST_2529 ymdB; conserved hypothetical protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D DENOEST_0156 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D DENOEST_3426 ybgC; acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D DENOEST_3910 protein of unknown function K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D DENOEST_0416 Protein tyrosine/serine phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D DENOEST_1343 Protein-tyrosine phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D DENOEST_1513 yciV; conserved hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D DENOEST_1429 L518 K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D DENOEST_1386 rpfG; Cyclic di-GMP phosphodiesterase response regulator RpfG K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D DENOEST_0335 putative cyclic di-GMP phosphodiesterase VC_1348 K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D DENOEST_2122 conserved protein of unknown function K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D DENOEST_3407 putative enzyme K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D DENOEST_1551 yjjV; Uncharacterized metal-dependent hydrolase YjjV K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D DENOEST_1732 ycfH; putative metallodependent hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D DENOEST_1016 def; Peptide deformylase 2 K01462 PDF; peptide deformylase [EC:3.5.1.88]
D DENOEST_3703 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D DENOEST_3694 aac; Aculeacin-A acylase K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97]
D DENOEST_0622 Deaminated glutathione amidase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D DENOEST_2428 Nitrilase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D DENOEST_2219 yceF; hypothetical protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D DENOEST_1313 conserved protein of unknown function K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D DENOEST_3017 conserved protein of unknown function K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D DENOEST_3756 Alpha/beta hydrolase K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D DENOEST_2053 Lipid-transfer protein K25623 ltp2; 17-hydroxy-3-oxo-4-pregnene-20-carboxyl-CoA lyase [EC:4.1.3.-]
D DENOEST_1178 Lipid-transfer protein K25623 ltp2; 17-hydroxy-3-oxo-4-pregnene-20-carboxyl-CoA lyase [EC:4.1.3.-]
D DENOEST_1339 conserved protein of unknown function K25623 ltp2; 17-hydroxy-3-oxo-4-pregnene-20-carboxyl-CoA lyase [EC:4.1.3.-]
D DENOEST_3332 conserved protein of unknown function K25623 ltp2; 17-hydroxy-3-oxo-4-pregnene-20-carboxyl-CoA lyase [EC:4.1.3.-]
D DENOEST_2366 nnr; ADP-dependent (S)-NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D DENOEST_1175 conserved protein of unknown function K25621 chsH2; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase alpha subunit [EC:4.2.1.-]
D DENOEST_1337 conserved protein of unknown function K25621 chsH2; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase alpha subunit [EC:4.2.1.-]
D DENOEST_2056 DNA-binding protein K25621 chsH2; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase alpha subunit [EC:4.2.1.-]
D DENOEST_1177 MaoC like domain-containing protein K25622 chsH1; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase beta subunit [EC:4.2.1.-]
D DENOEST_1338 putative MaoC like domain protein K25622 chsH1; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase beta subunit [EC:4.2.1.-]
D DENOEST_0546 Peptidylprolyl isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D DENOEST_3246 icmF; Isobutyryl-CoA mutase / P-loop GTPase K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13]
D DENOEST_1059 fadD; Long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase K18688 fadD19; 3-oxocholest-4-en-26-oate---CoA ligase [EC:6.2.1.42]
D DENOEST_2572 fadD; 3-oxocholest-4-en-26-oate--CoA ligase K18688 fadD19; 3-oxocholest-4-en-26-oate---CoA ligase [EC:6.2.1.42]
D DENOEST_2047 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K25775 casG; steroid-24-oyl-CoA synthetase [EC:6.2.1.-]
D DENOEST_0143 fadD; Long-chain-fatty-acid--CoA ligase FadD17 K25776 casI; steroid-22-oyl-CoA synthetase [EC:6.2.1.-]
D DENOEST_0596 Cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D DENOEST_0597 cphA; Cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D DENOEST_3500 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D DENOEST_1690 rsxD; putative inner membrane oxidoreductase K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D DENOEST_1691 rnfC; Ion-translocating oxidoreductase complex subunit C K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D DENOEST_1692 rsxB; putative iron-sulfur protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D DENOEST_2500 Cation transporter K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D DENOEST_1083 yloB; Calcium-transporting ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D DENOEST_1888 Copper-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D DENOEST_0381 sfsA; Sugar fermentation stimulation protein homolog K06206 sfsA; sugar fermentation stimulation protein A
D DENOEST_0389 sfsA; Sugar fermentation stimulation protein homolog K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D DENOEST_1252 fdhD; Sulfur carrier protein FdhD K02379 fdhD; FdhD protein
D DENOEST_0731 Ferredoxin 1 K05524 fdxA; ferredoxin
D DENOEST_1689 rsxG; putative oxidoreductase K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D DENOEST_1688 rsxE; putative inner membrane NADH-quinone reductase K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D DENOEST_1693 rsxA; putative inner membrane subunit of an electron transport system K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D DENOEST_1545 iscU; iron-binding protein believed to be involved in Fe-S protein formation or repair; function as a scaffold for the assembly of the transiently bound Fe/S cluster K04488 iscU; nitrogen fixation protein NifU and related proteins
D DENOEST_3806 iscU; Iron-sulfur cluster assembly scaffold protein IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D DENOEST_3267 conserved protein of unknown function K02448 norD; nitric oxide reductase NorD protein
D DENOEST_3262 norE; Additional subunit of nitric oxide reductase K02164 norE; nitric oxide reductase NorE protein
D DENOEST_3264 nirQ; Denitrification regulatory protein NirQ K04748 norQ; nitric oxide reductase NorQ protein
D DENOEST_3465 napD; Chaperone NapD K02570 napD; periplasmic nitrate reductase NapD
D DENOEST_1568 napC; nitrate reductase, cytochrome c-type,periplasmic K02569 napC; cytochrome c-type protein NapC
D DENOEST_1994 napC; nitrate reductase, cytochrome c-type,periplasmic K02569 napC; cytochrome c-type protein NapC
D DENOEST_2954 napC; nitrate reductase, cytochrome c-type,periplasmic K02569 napC; cytochrome c-type protein NapC
D DENOEST_3467 napG; Ferredoxin-type protein NapG K02573 napG; ferredoxin-type protein NapG
D DENOEST_3468 napH; ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) K02574 napH; ferredoxin-type protein NapH
D DENOEST_2084 putative Electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
D DENOEST_2115 putative Electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
D DENOEST_0110 etfB; electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit
D DENOEST_2952 conserved exported protein of unknown function K19344 nirC; cytochrome c55X
D DENOEST_2951 nirF; Protein NirF K19345 nirF; protein NirF
D DENOEST_3413 Dodecin K09165 K09165; dodecin
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D DENOEST_2761 conserved membrane protein of unknown function K06203 cysZ; CysZ protein
D DENOEST_0252 yggS; putative enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D DENOEST_3041 conserved protein of unknown function K08992 lapA; lipopolysaccharide assembly protein A
D DENOEST_3042 lapB; Lipopolysaccharide assembly protein B K19804 lapB; lipopolysaccharide assembly protein B
D DENOEST_1482 conserved membrane protein of unknown function K07027 K07027; glycosyltransferase 2 family protein
D DENOEST_3208 conserved protein of unknown function K07270 K07270; glycosyl transferase, family 25
D DENOEST_3212 Glycosyl transferase K07270 K07270; glycosyl transferase, family 25
D DENOEST_3218 Glycosyl transferase, family 25 K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D DENOEST_2860 conserved protein of unknown function K02498 hemY; HemY protein
D DENOEST_2947 nirJ; Heme biosynthesis protein K24868 nirJ; heme d1 biosynthesis protein
D DENOEST_0158 ubiB; 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D DENOEST_3882 conserved protein of unknown function K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D DENOEST_3173 conserved protein of unknown function K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D DENOEST_0167 conserved protein of unknown function K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D DENOEST_0984 mobB; Molybdopterin-guanine dinucleotide biosynthesis adapter protein K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
C 99999 Others
D DENOEST_0991 GNAT family N-acetyltransferase K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D DENOEST_0603 cspE; DNA-binding transcriptional repressor K03704 cspA; cold shock protein
D DENOEST_2657 cspE; DNA-binding transcriptional repressor K03704 cspA; cold shock protein
D DENOEST_3171 glnK; regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase) K04752 glnK; nitrogen regulatory protein P-II 2
D DENOEST_0942 yhgF; transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D DENOEST_0605 clpS; regulatory protein for ClpA substrate specificity K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D DENOEST_1300 tig; Trigger factor K03545 tig; trigger factor
D DENOEST_0449 msrQ; Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D DENOEST_1971 msrQ; Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D DENOEST_2030 smpB; trans-translation protein K03664 smpB; SsrA-binding protein
D DENOEST_2256 hypC; HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC
D DENOEST_3629 hypD; Hydrogenase maturation factor HypD K04654 hypD; hydrogenase expression/formation protein HypD
D DENOEST_2255 hypE; carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein K04655 hypE; hydrogenase expression/formation protein HypE
D DENOEST_2257 hypF; Carbamoyltransferase HypF2 K04656 hypF; hydrogenase maturation protein HypF
D DENOEST_3175 yifB; putative bifunctional enzyme and transcriptional regulator K07391 comM; magnesium chelatase family protein
D DENOEST_0342 yhfA; conserved hypothetical protein K07397 yhfA; putative redox protein
D DENOEST_1237 conserved protein of unknown function K07402 xdhC; xanthine dehydrogenase accessory factor
D DENOEST_2121 Xanthine dehydrogenase accessory factor (fragment) K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D DENOEST_1021 yicR; protein associated with replication fork, possible DNA repair protein K03630 radC; DNA repair protein RadC
D DENOEST_1830 conserved protein of unknown function K03630 radC; DNA repair protein RadC
D DENOEST_1997 conserved protein of unknown function K03630 radC; DNA repair protein RadC
D DENOEST_P0071 DNA repair protein K03630 radC; DNA repair protein RadC
D DENOEST_P0161 DNA repair protein K03630 radC; DNA repair protein RadC
D DENOEST_1671 rmuC; DNA recombination protein RmuC homolog K09760 rmuC; DNA recombination protein RmuC
D DENOEST_3100 yraN; conserved hypothetical protein K07460 yraN; putative endonuclease
D DENOEST_0111 conserved protein of unknown function K07461 K07461; putative endonuclease
D DENOEST_3705 smf; conserved hypothetical protein K04096 smf; DNA processing protein
D DENOEST_1107 ycaJ; recombination protein K07478 ycaJ; putative ATPase
D DENOEST_1833 p4 alpha zinc-binding domain-containing protein K06919 K06919; putative DNA primase/helicase
D DENOEST_2000 p4 alpha zinc-binding domain-containing protein K06919 K06919; putative DNA primase/helicase
D DENOEST_3959 DNA primase/helicase, phage-associated (fragment) K06919 K06919; putative DNA primase/helicase
D DENOEST_0033 DNA primase/helicase, phage-associated (fragment) K06919 K06919; putative DNA primase/helicase
D DENOEST_3853 repA; Regulatory protein RepA K07505 repA; regulatory protein RepA
D DENOEST_3052 3'-5' exonuclease K07501 K07501; 3'-5' exonuclease
D DENOEST_1034 protein of unknown function K07483 K07483; transposase
D DENOEST_2402 transposase K07483 K07483; transposase
D DENOEST_0101 transposase (fragment) K07483 K07483; transposase
D DENOEST_2395 conserved protein of unknown function K07484 K07484; transposase
D DENOEST_2400 conserved protein of unknown function K07484 K07484; transposase
D DENOEST_2401 transposase (fragment) K07484 K07484; transposase
D DENOEST_2774 transposase K07486 K07486; transposase
D DENOEST_2690 protein of unknown function K07491 rayT; REP-associated tyrosine transposase
D DENOEST_0099 transposase K07491 rayT; REP-associated tyrosine transposase
D DENOEST_1205 transposase K07493 K07493; putative transposase
D DENOEST_1151 Integrase K07497 K07497; putative transposase
D DENOEST_2393 transposase (fragment) K07497 K07497; putative transposase
D DENOEST_2394 Insertion element ISR1 uncharacterized 10 kDa protein A3 K07497 K07497; putative transposase
D DENOEST_2700 transposase (fragment) K07497 K07497; putative transposase
D DENOEST_2679 Integrase K14059 int; integrase
C 99979 Viral proteins
C 99998 Others
D DENOEST_1329 ybaB; conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D DENOEST_3888 mdtB; multidrug efflux system, subunit B K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D DENOEST_0405 Phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D DENOEST_1326 pit; putative low-affinity inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D DENOEST_0160 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D DENOEST_3012 conserved membrane protein of unknown function K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
C 99978 Cell growth
D DENOEST_1322 yciB; putative intracellular septation protein involved in cell division K06190 ispZ; intracellular septation protein
D DENOEST_0420 conserved protein of unknown function K22719 envC; murein hydrolase activator
C 99993 Cell motility
D DENOEST_2173 mglA; Mutual gliding-motility protein MglA K24105 mglA; mutual gliding-motility protein MglA
C 99995 Signaling proteins
D DENOEST_1014 bipA; GTP-binding protein K06207 typA; GTP-binding protein
D DENOEST_0310 ybeZ; putative enzyme with nucleoside triphosphate hydrolase domain K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D DENOEST_2516 Phosphate starvation-inducible protein PhoH K07175 phoH2; PhoH-like ATPase
D DENOEST_2125 yeaG; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K07180 prkA; serine protein kinase
D DENOEST_3258 Cyclic nucleotide-binding protein K07182 K07182; CBS domain-containing protein
D DENOEST_0719 conserved protein of unknown function K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D DENOEST_2658 lolA; Outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D DENOEST_3636 Outer-membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D DENOEST_0697 ABC transporter K04754 mlaA; phospholipid-binding lipoprotein MlaA
D DENOEST_1063 conserved protein of unknown function K06077 slyB; outer membrane lipoprotein SlyB
D DENOEST_3509 pcp; Outer membrane lipoprotein pcp K06077 slyB; outer membrane lipoprotein SlyB
D DENOEST_0901 conserved exported protein of unknown function K06142 hlpA; outer membrane protein
D DENOEST_1308 Lipoprotein NlpD/LppB homolog K06194 nlpD; lipoprotein NlpD
D DENOEST_3561 Uncharacterized outer-membrane protein y4mB K07275 ompW; outer membrane protein
D DENOEST_1403 conserved membrane protein of unknown function K07340 ybbJ; inner membrane protein
D DENOEST_1046 Efflux transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein
D DENOEST_1648 Efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D DENOEST_3891 RND family efflux transporter, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D DENOEST_1065 Osmotically inducible lipoprotein OsmB K04062 osmB; osmotically inducible lipoprotein OsmB
D DENOEST_0561 ccmE; periplasmic heme chaperone K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D DENOEST_0519 ccmI; C-type cytochrome biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D DENOEST_0520 ccmH; Cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D DENOEST_2790 conserved protein of unknown function K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D DENOEST_1578 phoU; negative regulator of PhoR/PhoB two-component regulator K02039 phoU; phosphate transport system protein
D DENOEST_2473 conserved protein of unknown function K02192 bfd; bacterioferritin-associated ferredoxin
D DENOEST_3771 cutA; Divalent-cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein
D DENOEST_0617 apaG; Protein ApaG K06195 apaG; ApaG protein
D DENOEST_2632 cyaY; Iron-sulfur cluster assembly protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D DENOEST_0670 conserved protein of unknown function K07216 hr; hemerythrin
D DENOEST_0989 conserved protein of unknown function K07216 hr; hemerythrin
D DENOEST_1679 Hemerythrin-like metal-binding domain K07216 hr; hemerythrin
D DENOEST_3034 Methyl-accepting chemotaxis sensory transducer K07216 hr; hemerythrin
D DENOEST_3740 Copper ABC transporter substrate-binding protein K07218 nosD; nitrous oxidase accessory protein
D DENOEST_2175 NnrS K07234 K07234; uncharacterized protein involved in response to NO
D DENOEST_3743 Nitrous oxide reductase accessory protein NosL K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D DENOEST_0750 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D DENOEST_1952 Helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D DENOEST_1956 conserved protein of unknown function K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D DENOEST_1394 yjbI; Group 2 truncated hemoglobin YjbI K06886 glbN; hemoglobin
D DENOEST_0315 putative patatin-like phospholipase K07001 K07001; NTE family protein
D DENOEST_0820 putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein
D DENOEST_1694 Patatin K07001 K07001; NTE family protein
D DENOEST_3446 Pyrimidine 5'-nucleotidase K07025 K07025; putative hydrolase of the HAD superfamily
D DENOEST_0348 putative chaperone involved in Fe-S cluster assembly and activation (HesB-like) K15724 erpA; iron-sulfur cluster insertion protein
D DENOEST_3802 sufB; component of SufBCD complex K09014 sufB; Fe-S cluster assembly protein SufB
D DENOEST_3804 Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D DENOEST_1467 conserved membrane protein of unknown function K07058 K07058; membrane protein
D DENOEST_1492 lemA; Protein LemA K03744 lemA; LemA protein
D DENOEST_2927 conserved hypothetical protein; putative signal peptide K03744 lemA; LemA protein
D DENOEST_1094 slyX; Protein SlyX homolog K03745 slyX; SlyX protein
D DENOEST_3706 smg; conserved hypothetical protein K03747 smg; Smg protein
D DENOEST_0362 conserved protein of unknown function K03749 dedD; DedD protein
D DENOEST_0749 conserved protein of unknown function K03749 dedD; DedD protein
D DENOEST_1495 dedA; conserved hypothetical protein; putative inner membrane protein K03975 dedA; membrane-associated protein
D DENOEST_3875 conserved membrane protein of unknown function K08972 K08972; putative membrane protein
D DENOEST_3158 yjdF; conserved hypothetical protein; putative inner membrane protein K08984 yjdF; putative membrane protein
D DENOEST_1742 conserved protein of unknown function K09858 K09858; SEC-C motif domain protein
D DENOEST_3106 Cupin K11312 K11312; cupin 2 domain-containing protein
D DENOEST_3553 phnA; conserved hypothetical protein K06193 phnA; protein PhnA
C 99997 Function unknown
D DENOEST_1731 Ankyrin repeat-containing protein (Modular protein) (fragment) K06867 K06867; uncharacterized protein
D DENOEST_1892 Ankyrin K06867 K06867; uncharacterized protein
D DENOEST_3555 conserved exported protein of unknown function K06867 K06867; uncharacterized protein
D DENOEST_2507 Radical SAM family protein K06871 K06871; uncharacterized protein
D DENOEST_2815 Radical SAM protein K06871 K06871; uncharacterized protein
D DENOEST_2926 conserved exported protein of unknown function K06872 K06872; uncharacterized protein
D DENOEST_1118 conserved protein of unknown function K06885 K06885; uncharacterized protein
D DENOEST_0319 conserved protein of unknown function K06888 K06888; uncharacterized protein
D DENOEST_2562 conserved protein of unknown function K06893 K06893; uncharacterized protein
D DENOEST_3996 Phage baseplate protein K06903 W; Bacteriophage baseplate protein W
D DENOEST_0070 Phage baseplate protein K06903 W; Bacteriophage baseplate protein W
D DENOEST_0088 Phage protein D K06905 D; Bacteriophage probable baseplate hub protein
D DENOEST_0086 Phage tail protein (fragment) K06906 gpU; phage tail protein
D DENOEST_0082 gpFI; putative prophage major tail sheath protein K06907 FI; Bacteriophage tail sheath protein
D DENOEST_0083 Phage major tail tube protein K06908 FII; Bacteriophage tail tube protein
D DENOEST_3698 AAA family ATPase K06923 K06923; uncharacterized protein
D DENOEST_3535 conserved protein of unknown function K06929 K06929; uncharacterized protein
D DENOEST_0131 protein of unknown function K06938 K06938; uncharacterized protein
D DENOEST_0132 conserved protein of unknown function K06938 K06938; uncharacterized protein
D DENOEST_1040 conserved protein of unknown function K06940 K06940; uncharacterized protein
D DENOEST_3252 conserved protein of unknown function K06950 K06950; uncharacterized protein
D DENOEST_0282 yqiA; Esterase YqiA K07000 K07000; uncharacterized protein
D DENOEST_1196 RND transporter K07003 K07003; uncharacterized protein
D DENOEST_1218 conserved membrane protein of unknown function K07003 K07003; uncharacterized protein
D DENOEST_1273 putative exporter of RND superfamily K07003 K07003; uncharacterized protein
D DENOEST_1743 PPOX class F420-dependent enzyme K07006 K07006; uncharacterized protein
D DENOEST_1758 conserved protein of unknown function K07006 K07006; uncharacterized protein
D DENOEST_0172 putative hydrolase of the alpha/beta superfamily K07018 K07018; uncharacterized protein
D DENOEST_0180 conserved protein of unknown function K07028 K07028; uncharacterized protein
D DENOEST_3268 YecA family protein K07039 K07039; uncharacterized protein
D DENOEST_2436 Amidohydrolase K07045 K07045; uncharacterized protein
D DENOEST_2968 Amidohydrolase 2 K07045 K07045; uncharacterized protein
D DENOEST_3645 Amidohydrolase K07045 K07045; uncharacterized protein
D DENOEST_3676 Amidohydrolase 2 K07045 K07045; uncharacterized protein
D DENOEST_1503 putative toxin-antitoxin system toxin component, PIN family K07063 K07063; uncharacterized protein
D DENOEST_0689 yjnA; putative membrane transporter protein YjnA K07090 K07090; uncharacterized protein
D DENOEST_1008 yjnA; putative membrane transporter protein YjnA K07090 K07090; uncharacterized protein
D DENOEST_3176 putative membrane transporter protein K07090 K07090; uncharacterized protein
D DENOEST_3767 putative membrane transporter protein K07090 K07090; uncharacterized protein
D DENOEST_0175 exported protein of unknown function K07126 K07126; uncharacterized protein
D DENOEST_0513 conserved exported protein of unknown function K07126 K07126; uncharacterized protein
D DENOEST_0517 Sel1 repeat family protein K07126 K07126; uncharacterized protein
D DENOEST_3231 conserved exported protein of unknown function K07126 K07126; uncharacterized protein
D DENOEST_2741 ATPase K07133 K07133; uncharacterized protein
D DENOEST_0092 ATPase K07133 K07133; uncharacterized protein
D DENOEST_0468 conserved protein of unknown function K07137 K07137; uncharacterized protein
D DENOEST_2851 MOSC domain-containing protein K07140 K07140; MOSC domain-containing protein
D DENOEST_1238 conserved protein of unknown function K07161 K07161; uncharacterized protein
D DENOEST_0593 conserved exported protein of unknown function K09005 K09005; uncharacterized protein
D DENOEST_3489 conserved protein of unknown function K09117 K09117; uncharacterized protein
D DENOEST_0249 conserved protein of unknown function K09131 K09131; uncharacterized protein
D DENOEST_0809 conserved protein of unknown function K09141 K09141; uncharacterized protein
D DENOEST_3306 ybeD; conserved hypothetical protein K09158 K09158; uncharacterized protein
D DENOEST_1245 conserved protein of unknown function K09386 K09386; uncharacterized protein
D DENOEST_1387 Carbon monoxide dehydrogenase subunit G K09386 K09386; uncharacterized protein
D DENOEST_1419 conserved protein of unknown function K09726 K09726; uncharacterized protein
D DENOEST_0140 yaiI; conserved hypothetical protein K09768 K09768; uncharacterized protein
D DENOEST_1321 yciI; putative enzyme K09780 K09780; uncharacterized protein
D DENOEST_2124 yeaH; conserved hypothetical protein K09786 K09786; uncharacterized protein
D DENOEST_1082 ybaN; Inner membrane protein YbaN K09790 K09790; uncharacterized protein
D DENOEST_3237 ycaR; conserved hypothetical protein K09791 K09791; uncharacterized protein
D DENOEST_0788 conserved membrane protein of unknown function K09792 K09792; uncharacterized protein
D DENOEST_0735 GTP-binding protein K09794 K09794; uncharacterized protein
D DENOEST_1616 conserved protein of unknown function K09794 K09794; uncharacterized protein
D DENOEST_2027 yfjF; hypothetical protein K09801 K09801; uncharacterized protein
D DENOEST_3700 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein
D DENOEST_3533 conserved protein of unknown function K09921 K09921; uncharacterized protein
D DENOEST_0801 conserved membrane protein of unknown function K09922 K09922; uncharacterized protein
D DENOEST_2493 conserved protein of unknown function K09926 K09926; uncharacterized protein
D DENOEST_1260 Antibiotic biosynthesis monooxygenase K09932 K09932; uncharacterized protein
D DENOEST_2780 conserved protein of unknown function K09937 K09937; uncharacterized protein
D DENOEST_3060 conserved membrane protein of unknown function K09939 K09939; uncharacterized protein
D DENOEST_3487 conserved protein of unknown function K09954 K09954; uncharacterized protein
D DENOEST_2979 conserved exported protein of unknown function K09978 K09978; uncharacterized protein
D DENOEST_1683 conserved protein of unknown function K09989 K09989; uncharacterized protein
D DENOEST_0404 Phosphate transport regulator K07220 K07220; uncharacterized protein
D DENOEST_1325 Phosphate transport regulator K07220 K07220; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 20, 2024