+D	GENES	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a> &nbsp; KEGG Orthology (KO) - Desulfosudis oleivorans </h2>
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A09100 Metabolism
B
B  09101 Carbohydrate metabolism
C    00010 Glycolysis / Gluconeogenesis [PATH:dol00010]
D      Dole_1849 Glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      Dole_2111 Diphosphate--fructose-6-phosphate 1-phosphotransferase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D      Dole_0860 6-phosphofructokinase	K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D      Dole_1694 phosphofructokinase	K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D      Dole_2284 fructose/tagatose bisphosphate aldolase-like protein	K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D      Dole_3187 predicted phospho-2-dehydro-3-deoxyheptonate aldolase	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      Dole_1952 predicted phospho-2-dehydro-3-deoxyheptonate aldolase	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      Dole_0499 Triose-phosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D      Dole_0500 glyceraldehyde-3-phosphate dehydrogenase, type I	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      Dole_0222 Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      Dole_0677 Phosphoglycerate kinase	K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D      Dole_0093 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent	K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D      Dole_0339 Phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      Dole_2125 pyruvate kinase	K00873 PK; pyruvate kinase [EC:2.7.1.40]
D      Dole_2657 pyruvate, phosphate dikinase	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      Dole_0221 pyruvate phosphate dikinase PEP/pyruvate-binding	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      Dole_1355 Pyruvate, water dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      Dole_2393 Pyruvate, water dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      Dole_1392 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      Dole_1391 thiamine pyrophosphate protein domain protein TPP-binding	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      Dole_1394 pyruvate/ketoisovalerate oxidoreductase, gamma subunit	K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D      Dole_1393 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit	K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D      Dole_1453 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D      Dole_3021 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      Dole_1065 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      Dole_3020 thiamine pyrophosphate protein domain protein TPP-binding	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      Dole_1066 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      Dole_2290 iron-containing alcohol dehydrogenase	K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D      Dole_1973 AMP-dependent synthetase and ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_1975 acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_0138 CoA-binding domain protein	K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D      Dole_0137 ATP-grasp domain protein	K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D      Dole_3063 CoA-binding domain protein	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      Dole_0162 CoA-binding domain protein	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      Dole_0571 HAD-superfamily hydrolase, subfamily IA, variant 3	K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D      Dole_1175 Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      Dole_2101 Aldehyde ferredoxin oxidoreductase	K11389 gapor; glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) [EC:1.2.7.6]
D      Dole_0376 Phosphoenolpyruvate carboxykinase (GTP)	K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C    00020 Citrate cycle (TCA cycle) [PATH:dol00020]
D      Dole_0026 citrate synthase I	K01647 CS; citrate synthase [EC:2.3.3.1]
D      Dole_1063 2-methylcitrate synthase/citrate synthase II	K01647 CS; citrate synthase [EC:2.3.3.1]
D      Dole_1003 aconitate hydratase 2	K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D      Dole_1908 isocitrate dehydrogenase, NADP-dependent	K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D      Dole_3021 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      Dole_1065 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      Dole_3020 thiamine pyrophosphate protein domain protein TPP-binding	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      Dole_1066 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      Dole_3019 2-oxoglutarate synthase	K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D      Dole_3022 4Fe-4S ferredoxin iron-sulfur binding domain protein	K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D      Dole_0073 succinyl-CoA synthetase, alpha subunit	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      Dole_0074 succinyl-CoA synthetase, beta subunit	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      Dole_1556 succinate dehydrogenase or fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      Dole_1557 4Fe-4S ferredoxin iron-sulfur binding domain protein	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      Dole_1555 succinate dehydrogenase or fumarate reductase cytochrome b subunit, b558 family	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      Dole_0693 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit	K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D      Dole_2374 malate dehydrogenase, NAD-dependent	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      Dole_0075 Conserved carboxylase region	K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D      Dole_0376 Phosphoenolpyruvate carboxykinase (GTP)	K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D      Dole_1392 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      Dole_1391 thiamine pyrophosphate protein domain protein TPP-binding	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      Dole_1394 pyruvate/ketoisovalerate oxidoreductase, gamma subunit	K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D      Dole_1393 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit	K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D      Dole_1453 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C    00030 Pentose phosphate pathway [PATH:dol00030]
D      Dole_1849 Glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      Dole_2229 Ribulose-phosphate 3-epimerase	K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D      Dole_1130 Transketolase central region	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      Dole_1131 Transketolase domain protein	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      Dole_0367 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      Dole_2486 putative transaldolase	K00616 TALDO1; transaldolase [EC:2.2.1.2]
D      Dole_1057 sugar-phosphate isomerase, RpiB/LacA/LacB family	K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D      Dole_1175 Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      Dole_2817 ribose-phosphate pyrophosphokinase	K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D      Dole_2501 Aldehyde ferredoxin oxidoreductase	K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D      Dole_2289 Aldehyde ferredoxin oxidoreductase	K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D      Dole_1771 Aldehyde ferredoxin oxidoreductase	K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D      Dole_1573 Hydroxypyruvate reductase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      Dole_2284 fructose/tagatose bisphosphate aldolase-like protein	K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D      Dole_3187 predicted phospho-2-dehydro-3-deoxyheptonate aldolase	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      Dole_1952 predicted phospho-2-dehydro-3-deoxyheptonate aldolase	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      Dole_2111 Diphosphate--fructose-6-phosphate 1-phosphotransferase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D      Dole_0860 6-phosphofructokinase	K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D      Dole_1694 phosphofructokinase	K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
C    00040 Pentose and glucuronate interconversions [PATH:dol00040]
D      Dole_1279 UDP-glucose 6-dehydrogenase	K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D      Dole_2229 Ribulose-phosphate 3-epimerase	K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D      Dole_2975 carbohydrate kinase FGGY	K00854 xylB; xylulokinase [EC:2.7.1.17]
C    00051 Fructose and mannose metabolism [PATH:dol00051]
D      Dole_0649 PfkB domain protein	K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D      Dole_2015 mannose-6-phosphate isomerase, class I	K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D      Dole_1175 Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      Dole_2031 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D      Dole_1968 NAD-dependent epimerase/dehydratase	K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D      Dole_1281 GDP-mannose 4,6-dehydratase	K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D      Dole_1282 NAD-dependent epimerase/dehydratase	K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D      Dole_2111 Diphosphate--fructose-6-phosphate 1-phosphotransferase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D      Dole_0860 6-phosphofructokinase	K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D      Dole_1694 phosphofructokinase	K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D      Dole_2284 fructose/tagatose bisphosphate aldolase-like protein	K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D      Dole_3187 predicted phospho-2-dehydro-3-deoxyheptonate aldolase	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      Dole_1952 predicted phospho-2-dehydro-3-deoxyheptonate aldolase	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      Dole_0499 Triose-phosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D      Dole_1057 sugar-phosphate isomerase, RpiB/LacA/LacB family	K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D      Dole_0502 PTS system fructose subfamily IIA component	K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C    00052 Galactose metabolism [PATH:dol00052]
D      Dole_1848 UDP-glucose 4-epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      Dole_0560 NAD-dependent epimerase/dehydratase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      Dole_0523 NAD-dependent epimerase/dehydratase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      Dole_1175 Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      Dole_2111 Diphosphate--fructose-6-phosphate 1-phosphotransferase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D      Dole_0860 6-phosphofructokinase	K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C    00053 Ascorbate and aldarate metabolism [PATH:dol00053]
D      Dole_1279 UDP-glucose 6-dehydrogenase	K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D      Dole_2324 NAD-dependent epimerase/dehydratase	K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
C    00500 Starch and sucrose metabolism [PATH:dol00500]
D      Dole_0650 sucrose-phosphate synthase	K00696 E2.4.1.14; sucrose-phosphate synthase [EC:2.4.1.14]
D      Dole_0651 Sucrose phosphorylase	K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7]
D      Dole_1959 glucose-1-phosphate cytidylyltransferase	K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D      Dole_0848 Starch synthase catalytic domain protein	K00703 glgA; starch synthase [EC:2.4.1.21]
D      Dole_0847 alpha amylase all-beta	K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D      Dole_0849 alpha-glucan phosphorylase	K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D      Dole_1322 glycogen/starch/alpha-glucan phosphorylase	K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D      Dole_0851 Amylo-alpha-16-glucosidase	K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D      Dole_1175 Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      Dole_1849 Glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      Dole_0649 PfkB domain protein	K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C    00520 Amino sugar and nucleotide sugar metabolism [PATH:dol00520]
D      Dole_0295 Beta-N-acetylhexosaminidase	K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D      Dole_0649 PfkB domain protein	K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D      Dole_3201 Glutamine--fructose-6-phosphate transaminase (isomerizing)	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      Dole_2024 phosphoglucosamine mutase	K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D      Dole_2025 UDP-N-acetylglucosamine pyrophosphorylase	K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D      Dole_0605 Nucleotidyl transferase	K11528 glmU; UDP-N-acetylglucosamine pyrophosphorylase [EC:2.7.7.23]
D      Dole_2551 UDP-N-acetylglucosamine 1-carboxyvinyltransferase	K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D      Dole_2785 UDP-N-acetylenolpyruvoylglucosamine reductase	K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D      Dole_1818 UDP-glucose/GDP-mannose dehydrogenase	K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D      Dole_2167 UDP-glucose/GDP-mannose dehydrogenase	K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D      Dole_1819 oxidoreductase domain protein	K13016 wbpB; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D      Dole_1837 DegT/DnrJ/EryC1/StrS aminotransferase	K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D      Dole_1820 transferase hexapeptide repeat containing protein	K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D      Dole_1824 transferase hexapeptide repeat containing protein	K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D      Dole_1828 UDP-N-acetylglucosamine 2-epimerase	K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23]
D      Dole_1280 NAD-dependent epimerase/dehydratase	K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D      Dole_1175 Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      Dole_1279 UDP-glucose 6-dehydrogenase	K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D      Dole_1303 UDP-sulfoquinovose synthase	K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
D      Dole_1848 UDP-glucose 4-epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      Dole_0560 NAD-dependent epimerase/dehydratase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      Dole_0523 NAD-dependent epimerase/dehydratase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      Dole_2324 NAD-dependent epimerase/dehydratase	K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D      Dole_0502 PTS system fructose subfamily IIA component	K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D      Dole_1849 Glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      Dole_2015 mannose-6-phosphate isomerase, class I	K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D      Dole_2031 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D      Dole_1968 NAD-dependent epimerase/dehydratase	K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D      Dole_1281 GDP-mannose 4,6-dehydratase	K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D      Dole_1282 NAD-dependent epimerase/dehydratase	K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D      Dole_1959 glucose-1-phosphate cytidylyltransferase	K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D      Dole_1960 CDP-glucose 4,6-dehydratase	K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D      Dole_0520 NAD-dependent epimerase/dehydratase	K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
C    00620 Pyruvate metabolism [PATH:dol00620]
D      Dole_1973 AMP-dependent synthetase and ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_1975 acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_1392 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      Dole_1391 thiamine pyrophosphate protein domain protein TPP-binding	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      Dole_1394 pyruvate/ketoisovalerate oxidoreductase, gamma subunit	K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D      Dole_1393 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit	K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D      Dole_1453 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D      Dole_3021 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      Dole_1065 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      Dole_3020 thiamine pyrophosphate protein domain protein TPP-binding	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      Dole_1066 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      Dole_2290 iron-containing alcohol dehydrogenase	K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D      Dole_2125 pyruvate kinase	K00873 PK; pyruvate kinase [EC:2.7.1.40]
D      Dole_2179 Carbamoyl-phosphate synthase L chain ATP-binding	K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D      Dole_1716 acylphosphatase	K01512 acyP; acylphosphatase [EC:3.6.1.7]
D      Dole_0138 CoA-binding domain protein	K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D      Dole_0137 ATP-grasp domain protein	K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D      Dole_3063 CoA-binding domain protein	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      Dole_0162 CoA-binding domain protein	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      Dole_2260 beta-lactamase domain protein	K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D      Dole_0028 beta-lactamase domain protein	K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D      Dole_2072 beta-lactamase domain protein	K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D      Dole_0336 beta-lactamase domain protein	K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D      Dole_2523 conserved hypothetical protein	K22373 larA; lactate racemase [EC:5.1.2.1]
D      Dole_2282 sodium ion-translocating decarboxylase, beta subunit	K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D      Dole_0075 Conserved carboxylase region	K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D      Dole_2374 malate dehydrogenase, NAD-dependent	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      Dole_0693 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit	K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D      Dole_0376 Phosphoenolpyruvate carboxykinase (GTP)	K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D      Dole_2657 pyruvate, phosphate dikinase	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      Dole_0221 pyruvate phosphate dikinase PEP/pyruvate-binding	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      Dole_1355 Pyruvate, water dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      Dole_2393 Pyruvate, water dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2041 2-isopropylmalate synthase	K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D      Dole_2040 2-isopropylmalate synthase/homocitrate synthase family protein	K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C    00630 Glyoxylate and dicarboxylate metabolism [PATH:dol00630]
D      Dole_1973 AMP-dependent synthetase and ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_1975 acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_2374 malate dehydrogenase, NAD-dependent	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      Dole_0026 citrate synthase I	K01647 CS; citrate synthase [EC:2.3.3.1]
D      Dole_1063 2-methylcitrate synthase/citrate synthase II	K01647 CS; citrate synthase [EC:2.3.3.1]
D      Dole_1003 aconitate hydratase 2	K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0080 Glyoxalase/bleomycin resistance protein/dioxygenase	K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D      Dole_0079 methylmalonyl-CoA mutase, large subunit	K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D      Dole_0002 FAD linked oxidase domain protein	K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D      Dole_1222 protein of unknown function DUF224 cysteine-rich region domain protein	K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D      Dole_2273 glutamine synthetase, type I	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_2272 glutamine synthetase catalytic region	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_2082 Glycine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      Dole_1573 Hydroxypyruvate reductase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      Dole_1334 formate dehydrogenase, alpha subunit	K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D      Dole_1335 molybdopterin oxidoreductase Fe4S4 region	K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D      Dole_0846 molybdopterin oxidoreductase	K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D      Dole_1333 Fe-S-cluster-containing hydrogenase components 1-like protein	K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D      Dole_0300 iron-sulfur cluster-binding protein	K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D      Dole_2251 4Fe-4S ferredoxin iron-sulfur binding domain protein	K00124 fdoH; formate dehydrogenase iron-sulfur subunit
C    00640 Propanoate metabolism [PATH:dol00640]
D      Dole_1973 AMP-dependent synthetase and ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_1975 acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_1499 AMP-dependent synthetase and ligase	K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D      Dole_0138 CoA-binding domain protein	K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D      Dole_0137 ATP-grasp domain protein	K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D      Dole_3063 CoA-binding domain protein	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      Dole_0162 CoA-binding domain protein	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      Dole_1392 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      Dole_1391 thiamine pyrophosphate protein domain protein TPP-binding	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      Dole_1394 pyruvate/ketoisovalerate oxidoreductase, gamma subunit	K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D      Dole_1393 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit	K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D      Dole_2179 Carbamoyl-phosphate synthase L chain ATP-binding	K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D      Dole_0080 Glyoxalase/bleomycin resistance protein/dioxygenase	K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D      Dole_0079 methylmalonyl-CoA mutase, large subunit	K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D      Dole_0074 succinyl-CoA synthetase, beta subunit	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      Dole_0073 succinyl-CoA synthetase, alpha subunit	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      Dole_1003 aconitate hydratase 2	K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
C    00650 Butanoate metabolism [PATH:dol00650]
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0271 3-hydroxybutyryl-CoA dehydrogenase	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      Dole_0830 3-hydroxyacyl-CoA dehydrogenase NAD-binding	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      Dole_1683 3-hydroxyacyl-CoA dehydrogenase NAD-binding	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      Dole_0155 3-hydroxyacyl-CoA dehydrogenase NAD-binding	K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D      Dole_0897 Enoyl-CoA hydratase/isomerase	K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D      Dole_0168 Enoyl-CoA hydratase/isomerase	K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D      Dole_2282 sodium ion-translocating decarboxylase, beta subunit	K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D      Dole_1556 succinate dehydrogenase or fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      Dole_1557 4Fe-4S ferredoxin iron-sulfur binding domain protein	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      Dole_1555 succinate dehydrogenase or fumarate reductase cytochrome b subunit, b558 family	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      Dole_0831 Pyridoxal-dependent decarboxylase	K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D      Dole_2592 Vinylacetyl-CoA Delta-isomerase	K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D      Dole_1392 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      Dole_1391 thiamine pyrophosphate protein domain protein TPP-binding	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      Dole_1394 pyruvate/ketoisovalerate oxidoreductase, gamma subunit	K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D      Dole_1393 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit	K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D      Dole_1453 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D      Dole_3021 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      Dole_1065 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      Dole_3020 thiamine pyrophosphate protein domain protein TPP-binding	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      Dole_1066 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      Dole_1247 acetoacetyl-CoA synthase	K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D      Dole_1610 acetoacetyl-CoA synthase	K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D      Dole_2037 acetolactate synthase, large subunit, biosynthetic type	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      Dole_2038 acetolactate synthase, small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D      Dole_2293 Acetolactate decarboxylase	K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D      Dole_1324 Alcohol dehydrogenase GroES domain protein	K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
C    00660 C5-Branched dibasic acid metabolism [PATH:dol00660]
D      Dole_2037 acetolactate synthase, large subunit, biosynthetic type	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      Dole_2038 acetolactate synthase, small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D      Dole_2293 Acetolactate decarboxylase	K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D      Dole_0074 succinyl-CoA synthetase, beta subunit	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      Dole_0073 succinyl-CoA synthetase, alpha subunit	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      Dole_3159 homoaconitate hydratase family protein	K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D      Dole_3158 aconitate hydratase domain protein	K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D      Dole_2219 3-isopropylmalate dehydrogenase	K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C    00562 Inositol phosphate metabolism [PATH:dol00562]
D      Dole_0004 Inositol-phosphate phosphatase	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D      Dole_0499 Triose-phosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B  09102 Energy metabolism
C    00190 Oxidative phosphorylation [PATH:dol00190]
D      Dole_0845 molybdopterin oxidoreductase Fe4S4 region	K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D      Dole_0117 4Fe-4S ferredoxin iron-sulfur binding domain protein	K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D      Dole_1556 succinate dehydrogenase or fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      Dole_1557 4Fe-4S ferredoxin iron-sulfur binding domain protein	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      Dole_1555 succinate dehydrogenase or fumarate reductase cytochrome b subunit, b558 family	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      Dole_2649 cytochrome bd ubiquinol oxidase subunit I	K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D      Dole_2650 cytochrome d ubiquinol oxidase, subunit II	K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D      Dole_0601 ATP synthase F1, alpha subunit	K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D      Dole_0603 ATP synthase F1, beta subunit	K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D      Dole_0602 ATP synthase F1, gamma subunit	K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D      Dole_0600 ATP synthase F1, delta subunit	K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D      Dole_0604 ATP synthase F1, epsilon subunit	K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D      Dole_0630 ATP synthase F0, A subunit	K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D      Dole_0801 ATP synthase F0, A subunit	K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D      Dole_0598 H+transporting two-sector ATPase B/B' subunit	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      Dole_0599 H+transporting two-sector ATPase B/B' subunit	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      Dole_0803 H+transporting two-sector ATPase B/B' subunit	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      Dole_0804 H+transporting two-sector ATPase B/B' subunit	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      Dole_0631 ATP synthase F0, C subunit	K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D      Dole_0802 ATP synthase F0, C subunit	K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D      Dole_0800 ATP synthase F0, C subunit	K02110 ATPF0C; F-type H+-transporting ATPase subunit c
C    00195 Photosynthesis
C    00196 Photosynthesis - antenna proteins
C    00710 Carbon fixation by Calvin cycle [PATH:dol00710]
D      Dole_0677 Phosphoglycerate kinase	K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D      Dole_0500 glyceraldehyde-3-phosphate dehydrogenase, type I	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      Dole_0222 Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      Dole_2284 fructose/tagatose bisphosphate aldolase-like protein	K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D      Dole_1130 Transketolase central region	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      Dole_1131 Transketolase domain protein	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      Dole_0367 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      Dole_1057 sugar-phosphate isomerase, RpiB/LacA/LacB family	K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D      Dole_0499 Triose-phosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D      Dole_2229 Ribulose-phosphate 3-epimerase	K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D      Dole_2486 putative transaldolase	K00616 TALDO1; transaldolase [EC:2.2.1.2]
D      Dole_2657 pyruvate, phosphate dikinase	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      Dole_0221 pyruvate phosphate dikinase PEP/pyruvate-binding	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      Dole_2374 malate dehydrogenase, NAD-dependent	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C    00720 Other carbon fixation pathways [PATH:dol00720]
D      Dole_1392 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      Dole_1391 thiamine pyrophosphate protein domain protein TPP-binding	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      Dole_1394 pyruvate/ketoisovalerate oxidoreductase, gamma subunit	K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D      Dole_1393 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit	K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D      Dole_1453 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D      Dole_1355 Pyruvate, water dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      Dole_2393 Pyruvate, water dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      Dole_2657 pyruvate, phosphate dikinase	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      Dole_0221 pyruvate phosphate dikinase PEP/pyruvate-binding	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      Dole_0075 Conserved carboxylase region	K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D      Dole_2374 malate dehydrogenase, NAD-dependent	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      Dole_0693 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit	K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D      Dole_1556 succinate dehydrogenase or fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      Dole_1557 4Fe-4S ferredoxin iron-sulfur binding domain protein	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      Dole_1555 succinate dehydrogenase or fumarate reductase cytochrome b subunit, b558 family	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      Dole_0073 succinyl-CoA synthetase, alpha subunit	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      Dole_0074 succinyl-CoA synthetase, beta subunit	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      Dole_2592 Vinylacetyl-CoA Delta-isomerase	K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_3021 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      Dole_1065 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      Dole_3020 thiamine pyrophosphate protein domain protein TPP-binding	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      Dole_1066 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      Dole_3019 2-oxoglutarate synthase	K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D      Dole_3022 4Fe-4S ferredoxin iron-sulfur binding domain protein	K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D      Dole_1908 isocitrate dehydrogenase, NADP-dependent	K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D      Dole_1003 aconitate hydratase 2	K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D      Dole_2179 Carbamoyl-phosphate synthase L chain ATP-binding	K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D      Dole_0080 Glyoxalase/bleomycin resistance protein/dioxygenase	K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D      Dole_0079 methylmalonyl-CoA mutase, large subunit	K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D      Dole_2825 electron transport complex, RnfABCDGE type, B subunit	K15022 fdhB; formate dehydrogenase (NADP+) beta subunit [EC:1.17.1.10]
D      Dole_3059 Formate--tetrahydrofolate ligase	K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D      Dole_2033 Methenyltetrahydrofolate cyclohydrolase	K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D      Dole_2330 Methylenetetrahydrofolate reductase (NAD(P)H)	K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D      Dole_0458 methylenetetrahydrofolate reductase	K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D      Dole_1151 methylenetetrahydrofolate reductase	K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D      Dole_3182 dihydropteroate synthase DHPS	K15023 acsE; 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase [EC:2.1.1.258]
D      Dole_2576 dihydropteroate synthase DHPS	K15023 acsE; 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase [EC:2.1.1.258]
D      Dole_2853 dihydropteroate synthase DHPS	K15023 acsE; 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase [EC:2.1.1.258]
D      Dole_1461 carbon-monoxide dehydrogenase, catalytic subunit	K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D      Dole_3185 carbon-monoxide dehydrogenase, catalytic subunit	K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D      Dole_3184 CO dehydrogenase/acetyl-CoA synthase complex, beta subunit	K14138 acsB; acetyl-CoA synthase [EC:2.3.1.169]
D      Dole_3183 CO dehydrogenase/acetyl-CoA synthase delta subunit	K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245]
D      Dole_3186 CO dehydrogenase/acetyl-CoA synthase delta subunit	K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245]
D      Dole_1973 AMP-dependent synthetase and ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_1975 acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C    00680 Methane metabolism [PATH:dol00680]
D      Dole_1334 formate dehydrogenase, alpha subunit	K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D      Dole_1335 molybdopterin oxidoreductase Fe4S4 region	K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D      Dole_0846 molybdopterin oxidoreductase	K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D      Dole_1333 Fe-S-cluster-containing hydrogenase components 1-like protein	K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D      Dole_0300 iron-sulfur cluster-binding protein	K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D      Dole_2251 4Fe-4S ferredoxin iron-sulfur binding domain protein	K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D      Dole_2825 electron transport complex, RnfABCDGE type, B subunit	K15022 fdhB; formate dehydrogenase (NADP+) beta subunit [EC:1.17.1.10]
D      Dole_3183 CO dehydrogenase/acetyl-CoA synthase delta subunit	K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245]
D      Dole_3186 CO dehydrogenase/acetyl-CoA synthase delta subunit	K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245]
D      Dole_1461 carbon-monoxide dehydrogenase, catalytic subunit	K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D      Dole_3185 carbon-monoxide dehydrogenase, catalytic subunit	K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D      Dole_2082 Glycine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      Dole_1573 Hydroxypyruvate reductase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      Dole_0339 Phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      Dole_2374 malate dehydrogenase, NAD-dependent	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      Dole_2284 fructose/tagatose bisphosphate aldolase-like protein	K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D      Dole_3187 predicted phospho-2-dehydro-3-deoxyheptonate aldolase	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      Dole_1952 predicted phospho-2-dehydro-3-deoxyheptonate aldolase	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      Dole_2111 Diphosphate--fructose-6-phosphate 1-phosphotransferase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D      Dole_0860 6-phosphofructokinase	K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D      Dole_0190 formylmethanofuran dehydrogenase subunit E region	K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12]
D      Dole_1150 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein	K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1]
D      Dole_1159 4Fe-4S ferredoxin iron-sulfur binding domain protein	K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D      Dole_1160 CoB--CoM heterodisulfide reductase	K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D      Dole_1161 Heterodisulfide reductase subunit C-like protein	K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D      Dole_1158 methyl-viologen-reducing hydrogenase delta subunit	K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6]
D      Dole_1973 AMP-dependent synthetase and ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_1975 acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_1392 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      Dole_1391 thiamine pyrophosphate protein domain protein TPP-binding	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      Dole_1394 pyruvate/ketoisovalerate oxidoreductase, gamma subunit	K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D      Dole_1393 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit	K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D      Dole_1355 Pyruvate, water dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      Dole_2393 Pyruvate, water dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      Dole_0093 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent	K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D      Dole_2852 D-3-phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      Dole_2813 D-3-phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      Dole_3221 phosphoserine aminotransferase	K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D      Dole_0290 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein	K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D      Dole_1111 trimethylamine methyltransferase	K14083 mttB; trimethylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.250]
D      Dole_1106 Trimethylamine:corrinoid methyltransferase-like protein	K14083 mttB; trimethylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.250]
D      Dole_1109 Trimethylamine:corrinoid methyltransferase-like protein	K14083 mttB; trimethylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.250]
D      Dole_0061 cobalamin B12-binding domain protein	K16179 mtbC; dimethylamine corrinoid protein
D      Dole_2958 cobalamin B12-binding domain protein	K16179 mtbC; dimethylamine corrinoid protein
D      Dole_2964 cobalamin B12-binding domain protein	K16179 mtbC; dimethylamine corrinoid protein
C    00910 Nitrogen metabolism [PATH:dol00910]
D      Dole_2875 hybrid cluster protein	K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D      Dole_1634 conserved hypothetical protein	K10535 hao; hydroxylamine dehydrogenase [EC:1.7.2.6]
D      Dole_0933 2-nitropropane dioxygenase NPD	K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D      Dole_1647 Glutamate dehydrogenase (NADP(+))	K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D      Dole_2273 glutamine synthetase, type I	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_2272 glutamine synthetase catalytic region	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_2275 ferredoxin-dependent glutamate synthase	K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D      Dole_0317 glutamate synthase (NADPH), homotetrameric	K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
C    00920 Sulfur metabolism [PATH:dol00920]
D      Dole_0212 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein	K15553 ssuA; sulfonate transport system substrate-binding protein
D      Dole_0213 binding-protein-dependent transport systems inner membrane component	K15554 ssuC; sulfonate transport system permease protein
D      Dole_1002 sulfate adenylyltransferase	K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D      Dole_1013 sulfate adenylyltransferase	K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D      Dole_1363 Adenylyl-sulfate kinase	K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D      Dole_2032 3'(2'),5'-bisphosphate nucleotidase	K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D      Dole_3032 phosphoesterase RecJ domain protein	K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D      Dole_0998 adenylylsulfate reductase, alpha subunit	K00394 aprA; adenylylsulfate reductase, subunit A [EC:1.8.99.2]
D      Dole_0997 adenylylsulfate reductase, beta subunit	K00395 aprB; adenylylsulfate reductase, subunit B [EC:1.8.99.2]
D      Dole_0748 Proto-chlorophyllide reductase 57 kD subunit	K00385 asrC; anaerobic sulfite reductase subunit C
D      Dole_2669 sulfite reductase, dissimilatory-type alpha subunit	K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D      Dole_2670 sulfite reductase, dissimilatory-type beta subunit	K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
D      Dole_0450 Nitrate reductase gamma subunit	K27187 dsrM; [DsrC]-trisulfide reductase subunit M [EC:1.8.5.10]
D      Dole_0451 4Fe-4S ferredoxin, iron-sulfur binding	K27188 dsrK; [DsrC]-trisulfide reductase subunit K [EC:1.8.5.10]
D      Dole_0452 cytochrome c family protein	K27189 dsrJ; [DsrC]-trisulfide reductase subunit J
D      Dole_0453 4Fe-4S ferredoxin iron-sulfur binding domain protein	K27190 dsrO; [DsrC]-trisulfide reductase subunit O
D      Dole_0454 Polysulphide reductase NrfD	K27191 dsrP; [DsrC]-trisulfide reductase subunit P
D      Dole_0126 Formate dehydrogenase	K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D      Dole_2805 Rhodanese domain protein	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      Dole_0752 homoserine O-acetyltransferase	K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D      Dole_1401 Cystathionine gamma-synthase	K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B  09103 Lipid metabolism
C    00061 Fatty acid biosynthesis [PATH:dol00061]
D      Dole_2179 Carbamoyl-phosphate synthase L chain ATP-binding	K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D      Dole_2083 acyl carrier protein	K02078 acpP; acyl carrier protein
D      Dole_1850 3-oxoacyl-(acyl-carrier-protein) synthase III	K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D      Dole_1608 short-chain dehydrogenase/reductase SDR	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      Dole_2084 3-oxoacyl-(acyl-carrier-protein) reductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      Dole_2622 short-chain dehydrogenase/reductase SDR	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      Dole_2841 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ	K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D      Dole_3006 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0337 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0314 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0164 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_1204 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0225 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C    00062 Fatty acid elongation
C    00071 Fatty acid degradation [PATH:dol00071]
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0224 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      Dole_0156 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      Dole_0155 3-hydroxyacyl-CoA dehydrogenase NAD-binding	K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D      Dole_3102 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_0626 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_3123 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_0934 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_1553 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_1860 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_1921 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_0041 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_2903 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_3006 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0337 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0314 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0164 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_1204 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0225 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_2290 iron-containing alcohol dehydrogenase	K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C    00073 Cutin, suberine and wax biosynthesis
C    00100 Steroid biosynthesis
C    00120 Primary bile acid biosynthesis
C    00121 Secondary bile acid biosynthesis
C    00140 Steroid hormone biosynthesis
C    00561 Glycerolipid metabolism [PATH:dol00561]
D      Dole_1573 Hydroxypyruvate reductase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      Dole_1395 glycerol kinase	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      Dole_1991 Glycerol-3-phosphate O-acyltransferase	K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D      Dole_0384 protein of unknown function DUF205	K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D      Dole_2499 1-acylglycerol-3-phosphate O-acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      Dole_0128 1-acylglycerol-3-phosphate O-acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      Dole_0983 1-acyl-sn-glycerol-3-phosphate acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      Dole_1881 1-acylglycerol-3-phosphate O-acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      Dole_0360 hydrolase of alpha/beta superfamily	K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D      Dole_1144 alpha/beta hydrolase fold	K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D      Dole_0949 PGAP1 family protein	K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D      Dole_1303 UDP-sulfoquinovose synthase	K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
C    00564 Glycerophospholipid metabolism [PATH:dol00564]
D      Dole_0674 Glycerol-3-phosphate dehydrogenase (NAD(P)(+))	K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D      Dole_2616 FAD dependent oxidoreductase	K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D      Dole_1021 FAD dependent oxidoreductase	K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D      Dole_1020 Glycerol-3-phosphate dehydrogenase	K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D      Dole_1019 protein of unknown function DUF224 cysteine-rich region domain protein	K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D      Dole_1991 Glycerol-3-phosphate O-acyltransferase	K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D      Dole_0384 protein of unknown function DUF205	K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D      Dole_2499 1-acylglycerol-3-phosphate O-acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      Dole_0128 1-acylglycerol-3-phosphate O-acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      Dole_0983 1-acyl-sn-glycerol-3-phosphate acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      Dole_1881 1-acylglycerol-3-phosphate O-acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      Dole_2521 Phospholipase D	K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4]
D      Dole_2897 outer membrane phospholipase A	K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D      Dole_1781 glycerophosphoryl diester phosphodiesterase	K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D      Dole_0479 phosphatidate cytidylyltransferase	K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D      Dole_2218 CDP-diacylglycerol--serine O-phosphatidyltransferase	K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D      Dole_2245 CDP-alcohol phosphatidyltransferase	K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D      Dole_2217 phosphatidylserine decarboxylase related protein	K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D      Dole_2485 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D      Dole_1265 phosphatidylglycerophosphatase A	K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D      Dole_2328 phospholipase D/Transphosphatidylase	K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D      Dole_0399 FAD dependent oxidoreductase	K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11]
C    00565 Ether lipid metabolism [PATH:dol00565]
D      Dole_2614 FAD linked oxidase domain protein	K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26]
D      Dole_2897 outer membrane phospholipase A	K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D      Dole_2521 Phospholipase D	K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4]
C    00600 Sphingolipid metabolism [PATH:dol00600]
D      Dole_1506 short-chain dehydrogenase/reductase SDR	K04708 KDSR; 3-dehydrosphinganine reductase [EC:1.1.1.102]
D      Dole_2194 short-chain dehydrogenase/reductase SDR	K04708 KDSR; 3-dehydrosphinganine reductase [EC:1.1.1.102]
D      Dole_2360 hypothetical protein	K12349 ASAH2; neutral ceramidase [EC:3.5.1.23]
C    00590 Arachidonic acid metabolism
D      Dole_2897 outer membrane phospholipase A	K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C    00591 Linoleic acid metabolism
D      Dole_2897 outer membrane phospholipase A	K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C    00592 alpha-Linolenic acid metabolism [PATH:dol00592]
D      Dole_2897 outer membrane phospholipase A	K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D      Dole_0224 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      Dole_0156 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C    01040 Biosynthesis of unsaturated fatty acids
B
B  09104 Nucleotide metabolism
C    00230 Purine metabolism [PATH:dol00230]
D      Dole_1905 NUDIX hydrolase	K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D      Dole_1175 Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      Dole_2817 ribose-phosphate pyrophosphokinase	K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D      Dole_0122 amidophosphoribosyltransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D      Dole_2113 Amidophosphoribosyltransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D      Dole_1427 phosphoribosylamine--glycine ligase	K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D      Dole_1645 phosphoribosylglycinamide formyltransferase	K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D      Dole_0483 Phosphoribosylformylglycinamidine synthase	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      Dole_0482 Phosphoribosylformylglycinamidine synthase	K23270 purSL; phosphoribosylformylglycinamidine synthase subunit PurSL [EC:6.3.5.3]
D      Dole_0293 phosphoribosylformylglycinamidine cyclo-ligase	K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D      Dole_2369 phosphoribosylaminoimidazole-succinocarboxamide synthase	K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D      Dole_1854 adenylosuccinate lyase	K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D      Dole_1516 Phosphoribosylaminoimidazolecarboxamide formyltransferase	K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D      Dole_2619 adenine phosphoribosyltransferase	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      Dole_1163 stationary-phase survival protein SurE	K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D      Dole_2169 protein of unknown function DUF152	K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D      Dole_1423 hypoxanthine phosphoribosyltransferase	K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D      Dole_1886 inosine-5'-monophosphate dehydrogenase	K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D      Dole_2625 Nucleoside-diphosphate kinase	K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D      Dole_0374 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family	K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D      Dole_2680 ExsB family protein	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      Dole_0966 GMP synthase, large subunit	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      Dole_2902 CMP/dCMP deaminase zinc-binding	K01487 guaD; guanine deaminase [EC:3.5.4.3]
D      Dole_1910 Guanylate kinase	K00942 gmk; guanylate kinase [EC:2.7.4.8]
D      Dole_2570 anaerobic ribonucleoside-triphosphate reductase	K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D      Dole_1124 metal-dependent phosphohydrolase HD sub domain	K01129 dgt; dGTPase [EC:3.1.5.1]
D      Dole_0439 putative deoxyguanosinetriphosphate triphosphohydrolase	K01129 dgt; dGTPase [EC:3.1.5.1]
D      Dole_2057 (p)ppGpp synthetase I, SpoT/RelA	K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D      Dole_0034 adenylate/guanylate cyclase with TPR repeats	K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D      Dole_2575 adenylate/guanylate cyclase	K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D      Dole_2312 putative adenylyl cyclase CyaB	K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D      Dole_2029 Adenylosuccinate synthase	K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D      Dole_0469 adenylate kinase	K00939 adk; adenylate kinase [EC:2.7.4.3]
D      Dole_1146 Adenylate kinase and related kinase-like protein	K00939 adk; adenylate kinase [EC:2.7.4.3]
D      Dole_0781 MazG family protein	K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D      Dole_1363 Adenylyl-sulfate kinase	K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D      Dole_1002 sulfate adenylyltransferase	K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D      Dole_1013 sulfate adenylyltransferase	K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
C    00240 Pyrimidine metabolism [PATH:dol00240]
D      Dole_0121 carbamoyl-phosphate synthase, large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      Dole_1446 carbamoyl-phosphate synthase, large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      Dole_0120 carbamoyl-phosphate synthase, small subunit	K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D      Dole_0514 aspartate carbamoyltransferase	K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D      Dole_0515 dihydroorotase, multifunctional complex type	K01465 URA4; dihydroorotase [EC:3.5.2.3]
D      Dole_1495 dihydroorotate dehydrogenase family protein	K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D      Dole_0627 oxidoreductase FAD/NAD(P)-binding domain protein	K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D      Dole_3177 orotate phosphoribosyltransferase	K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D      Dole_2568 orotidine 5'-phosphate decarboxylase	K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D      Dole_0476 uridylate kinase	K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D      Dole_2625 Nucleoside-diphosphate kinase	K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D      Dole_0781 MazG family protein	K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D      Dole_1177 maf protein	K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D      Dole_0341 CTP synthase	K01937 pyrG; CTP synthase [EC:6.3.4.2]
D      Dole_1982 cytidylate kinase	K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D      Dole_1163 stationary-phase survival protein SurE	K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D      Dole_3195 Uracil phosphoribosyltransferase	K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D      Dole_2570 anaerobic ribonucleoside-triphosphate reductase	K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D      Dole_2081 CMP/dCMP deaminase zinc-binding	K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D      Dole_1165 dTMP kinase	K00943 tmk; dTMP kinase [EC:2.7.4.9]
D      Dole_3028 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut	K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D      Dole_1745 thymidylate synthase-like protein	K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B  09105 Amino acid metabolism
C    00250 Alanine, aspartate and glutamate metabolism [PATH:dol00250]
D      Dole_0081 aminotransferase class I and II	K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D      Dole_1490 L-aspartate oxidase	K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D      Dole_1462 asparagine synthase (glutamine-hydrolyzing)	K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D      Dole_1107 asparagine synthase (glutamine-hydrolyzing)	K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D      Dole_1134 alanine dehydrogenase	K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D      Dole_1068 alanine dehydrogenase	K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D      Dole_2491 Argininosuccinate synthase	K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D      Dole_2490 argininosuccinate lyase	K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D      Dole_2029 Adenylosuccinate synthase	K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D      Dole_1854 adenylosuccinate lyase	K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D      Dole_0514 aspartate carbamoyltransferase	K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D      Dole_0831 Pyridoxal-dependent decarboxylase	K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D      Dole_2275 ferredoxin-dependent glutamate synthase	K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D      Dole_0317 glutamate synthase (NADPH), homotetrameric	K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D      Dole_1647 Glutamate dehydrogenase (NADP(+))	K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D      Dole_2273 glutamine synthetase, type I	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_2272 glutamine synthetase catalytic region	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_0121 carbamoyl-phosphate synthase, large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      Dole_1446 carbamoyl-phosphate synthase, large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      Dole_0120 carbamoyl-phosphate synthase, small subunit	K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D      Dole_0483 Phosphoribosylformylglycinamidine synthase	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      Dole_3201 Glutamine--fructose-6-phosphate transaminase (isomerizing)	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      Dole_0122 amidophosphoribosyltransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D      Dole_2113 Amidophosphoribosyltransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C    00260 Glycine, serine and threonine metabolism [PATH:dol00260]
D      Dole_0959 aspartate/glutamate/uridylate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      Dole_0773 aspartate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      Dole_2220 aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      Dole_0291 Homoserine dehydrogenase	K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D      Dole_0290 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein	K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D      Dole_2746 threonine synthase	K01733 thrC; threonine synthase [EC:4.2.3.1]
D      Dole_2082 Glycine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      Dole_1573 Hydroxypyruvate reductase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      Dole_0093 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent	K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D      Dole_2852 D-3-phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      Dole_2813 D-3-phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      Dole_3221 phosphoserine aminotransferase	K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D      Dole_0266 amine oxidase	K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D      Dole_2218 CDP-diacylglycerol--serine O-phosphatidyltransferase	K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D      Dole_2245 CDP-alcohol phosphatidyltransferase	K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D      Dole_1563 tryptophan synthase, alpha subunit	K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D      Dole_1564 tryptophan synthase, beta subunit	K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D      Dole_2074 pyridoxal-phosphate dependent TrpB-like enzyme	K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D      Dole_0961 diaminobutyrate--2-oxoglutarate aminotransferase	K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D      Dole_0962 L-2,4-diaminobutyric acid acetyltransferase	K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178]
D      Dole_0960 Ectoine synthase	K06720 ectC; L-ectoine synthase [EC:4.2.1.108]
C    00270 Cysteine and methionine metabolism [PATH:dol00270]
D      Dole_2850 Methionine adenosyltransferase	K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D      Dole_2430 Spermine synthase	K00797 speE; spermidine synthase [EC:2.5.1.16]
D      Dole_2618 methylthioadenosine phosphorylase	K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D      Dole_2169 protein of unknown function DUF152	K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D      Dole_1306 eIF-2B alpha/beta/delta-related protein	K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D      Dole_0357 adenosylhomocysteinase	K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D      Dole_0959 aspartate/glutamate/uridylate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      Dole_0773 aspartate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      Dole_2220 aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      Dole_0291 Homoserine dehydrogenase	K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D      Dole_0752 homoserine O-acetyltransferase	K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D      Dole_1401 Cystathionine gamma-synthase	K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D      Dole_0753 O-acetylhomoserine aminocarboxypropyltransferase	K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D      Dole_2663 branched-chain amino acid aminotransferase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      Dole_1463 glutamate--cysteine ligase GCS2	K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D      Dole_0081 aminotransferase class I and II	K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D      Dole_2805 Rhodanese domain protein	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      Dole_2374 malate dehydrogenase, NAD-dependent	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      Dole_2852 D-3-phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      Dole_2813 D-3-phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      Dole_3221 phosphoserine aminotransferase	K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C    00280 Valine, leucine and isoleucine degradation [PATH:dol00280]
D      Dole_2663 branched-chain amino acid aminotransferase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      Dole_3102 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_0626 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_3123 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_0934 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_1553 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_1860 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_1921 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_0041 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_2903 acyl-CoA dehydrogenase domain protein	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      Dole_0224 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      Dole_0156 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      Dole_0080 Glyoxalase/bleomycin resistance protein/dioxygenase	K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D      Dole_0079 methylmalonyl-CoA mutase, large subunit	K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D      Dole_1247 acetoacetyl-CoA synthase	K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D      Dole_1610 acetoacetyl-CoA synthase	K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C    00290 Valine, leucine and isoleucine biosynthesis [PATH:dol00290]
D      Dole_3159 homoaconitate hydratase family protein	K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D      Dole_3158 aconitate hydratase domain protein	K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D      Dole_2219 3-isopropylmalate dehydrogenase	K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D      Dole_2037 acetolactate synthase, large subunit, biosynthetic type	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      Dole_2038 acetolactate synthase, small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D      Dole_2039 ketol-acid reductoisomerase	K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D      Dole_2036 dihydroxy-acid dehydratase	K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D      Dole_2663 branched-chain amino acid aminotransferase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      Dole_2041 2-isopropylmalate synthase	K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D      Dole_2040 2-isopropylmalate synthase/homocitrate synthase family protein	K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C    00300 Lysine biosynthesis [PATH:dol00300]
D      Dole_0291 Homoserine dehydrogenase	K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D      Dole_0959 aspartate/glutamate/uridylate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      Dole_0773 aspartate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      Dole_2220 aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      Dole_2667 dihydrodipicolinate synthase	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      Dole_1396 dihydrodipicolinate reductase	K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D      Dole_2493 acetylornithine and succinylornithine aminotransferase	K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D      Dole_3160 Diaminopimelate epimerase	K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D      Dole_2779 aminotransferase class I and II	K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D      Dole_2135 Diaminopimelate decarboxylase	K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D      Dole_3243 Orn/DAP/Arg decarboxylase 2	K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D      Dole_2792 UDP-N-acetylmuramyl-tripeptide synthetase	K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D      Dole_2791 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase	K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C    00310 Lysine degradation [PATH:dol00310]
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1070 aminotransferase class-III	K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D      Dole_1893 lysine 2,3-aminomutase YodO family protein	K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D      Dole_2513 lysine 2,3-aminomutase YodO family protein	K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D      Dole_2170 protein of unknown function DUF849	K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247]
D      Dole_2137 protein of unknown function DUF849	K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247]
C    00220 Arginine biosynthesis [PATH:dol00220]
D      Dole_2492 ornithine carbamoyltransferase	K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D      Dole_2491 Argininosuccinate synthase	K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D      Dole_2490 argininosuccinate lyase	K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D      Dole_0483 Phosphoribosylformylglycinamidine synthase	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      Dole_2273 glutamine synthetase, type I	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_2272 glutamine synthetase catalytic region	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_0121 carbamoyl-phosphate synthase, large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      Dole_1446 carbamoyl-phosphate synthase, large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      Dole_0120 carbamoyl-phosphate synthase, small subunit	K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D      Dole_1647 Glutamate dehydrogenase (NADP(+))	K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D      Dole_0081 aminotransferase class I and II	K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D      Dole_0134 GCN5-related N-acetyltransferase	K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D      Dole_0059 arginine biosynthesis bifunctional protein ArgJ	K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D      Dole_2494 acetylglutamate kinase	K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D      Dole_2034 N-acetyl-gamma-glutamyl-phosphate reductase	K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D      Dole_2493 acetylornithine and succinylornithine aminotransferase	K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C    00330 Arginine and proline metabolism [PATH:dol00330]
D      Dole_3234 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D      Dole_2430 Spermine synthase	K00797 speE; spermidine synthase [EC:2.5.1.16]
D      Dole_1070 aminotransferase class-III	K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D      Dole_0266 amine oxidase	K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D      Dole_1076 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_0166 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_2535 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_0129 pyrroline-5-carboxylate reductase	K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D      Dole_0089 glutamate 5-kinase	K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D      Dole_0090 gamma-glutamyl phosphate reductase	K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D      Dole_0081 aminotransferase class I and II	K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C    00340 Histidine metabolism [PATH:dol00340]
D      Dole_1118 ATP phosphoribosyltransferase	K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D      Dole_1119 Phosphoribosyl-AMP cyclohydrolase	K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D      Dole_2154 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D      Dole_0782 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit	K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D      Dole_2351 histidine biosynthesis protein	K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D      Dole_0783 imidazoleglycerol phosphate synthase, cyclase subunit	K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D      Dole_2155 Imidazoleglycerol-phosphate dehydratase	K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D      Dole_1983 histidinol-phosphate aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      Dole_3222 Histidinol dehydrogenase	K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D      Dole_0266 amine oxidase	K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C    00350 Tyrosine metabolism [PATH:dol00350]
D      Dole_0081 aminotransferase class I and II	K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D      Dole_1983 histidinol-phosphate aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      Dole_0266 amine oxidase	K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D      Dole_2290 iron-containing alcohol dehydrogenase	K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C    00360 Phenylalanine metabolism [PATH:dol00360]
D      Dole_0266 amine oxidase	K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D      Dole_2323 Phenylacetate--CoA ligase	K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D      Dole_0838 Phenylacetate--CoA ligase	K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D      Dole_0559 phenylacetate--CoA ligase	K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D      Dole_0386 thioesterase superfamily protein	K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D      Dole_0271 3-hydroxybutyryl-CoA dehydrogenase	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      Dole_0830 3-hydroxyacyl-CoA dehydrogenase NAD-binding	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      Dole_1683 3-hydroxyacyl-CoA dehydrogenase NAD-binding	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      Dole_0081 aminotransferase class I and II	K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D      Dole_1983 histidinol-phosphate aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      Dole_1646 catalase/peroxidase HPI	K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D      Dole_1076 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_0166 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_2535 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C    00380 Tryptophan metabolism [PATH:dol00380]
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0266 amine oxidase	K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D      Dole_1076 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_0166 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_2535 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_1646 catalase/peroxidase HPI	K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C    00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:dol00400]
D      Dole_3187 predicted phospho-2-dehydro-3-deoxyheptonate aldolase	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      Dole_1952 predicted phospho-2-dehydro-3-deoxyheptonate aldolase	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      Dole_2228 3-dehydroquinate dehydratase, type II	K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D      Dole_3109 shikimate 5-dehydrogenase	K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D      Dole_3110 Shikimate kinase	K00891 aroK; shikimate kinase [EC:2.7.1.71]
D      Dole_1948 hypothetical protein	K00891 aroK; shikimate kinase [EC:2.7.1.71]
D      Dole_1949 3-phosphoshikimate 1-carboxyvinyltransferase	K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D      Dole_1947 Chorismate synthase	K01736 aroC; chorismate synthase [EC:4.2.3.5]
D      Dole_1569 Anthranilate synthase	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      Dole_1568 glutamine amidotransferase of anthranilate synthase	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D      Dole_1567 anthranilate phosphoribosyltransferase	K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D      Dole_2359 N-(5'phosphoribosyl)anthranilate isomerase (PRAI)	K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D      Dole_1565 Phosphoribosylanthranilate isomerase	K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D      Dole_1566 Indole-3-glycerol-phosphate synthase	K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D      Dole_1563 tryptophan synthase, alpha subunit	K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D      Dole_1564 tryptophan synthase, beta subunit	K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D      Dole_2074 pyridoxal-phosphate dependent TrpB-like enzyme	K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D      Dole_2583 prephenate dehydratase	K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D      Dole_1950 Prephenate dehydratase	K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D      Dole_1946 Prephenate dehydrogenase	K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D      Dole_0081 aminotransferase class I and II	K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D      Dole_1983 histidinol-phosphate aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B  09106 Metabolism of other amino acids
C    00410 beta-Alanine metabolism [PATH:dol00410]
D      Dole_0831 Pyridoxal-dependent decarboxylase	K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D      Dole_0042 pantoate--beta-alanine ligase	K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C    00430 Taurine and hypotaurine metabolism [PATH:dol00430]
D      Dole_0831 Pyridoxal-dependent decarboxylase	K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D      Dole_1134 alanine dehydrogenase	K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D      Dole_1068 alanine dehydrogenase	K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
C    00440 Phosphonate and phosphinate metabolism
D      Dole_1108 conserved hypothetical protein	K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C    00450 Selenocompound metabolism [PATH:dol00450]
D      Dole_1401 Cystathionine gamma-synthase	K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D      Dole_1512 thioredoxin reductase	K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D      Dole_1002 sulfate adenylyltransferase	K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D      Dole_1013 sulfate adenylyltransferase	K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D      Dole_3249 selenide, water dikinase	K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D      Dole_3060 L-seryl-tRNA(Sec) selenium transferase	K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D      Dole_3204 methionyl-tRNA synthetase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C    00460 Cyanoamino acid metabolism
D      Dole_2082 Glycine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C    00470 D-Amino acid metabolism [PATH:dol00470]
D      Dole_0057 alanine racemase	K01775 alr; alanine racemase [EC:5.1.1.1]
D      Dole_1426 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_2749 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_1891 GCN5-related N-acetyltransferase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_0483 Phosphoribosylformylglycinamidine synthase	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      Dole_0538 glutamate racemase	K01776 murI; glutamate racemase [EC:5.1.1.3]
D      Dole_2789 UDP-N-acetylmuramoylalanine--D-glutamate ligase	K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D      Dole_3160 Diaminopimelate epimerase	K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D      Dole_2135 Diaminopimelate decarboxylase	K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D      Dole_3243 Orn/DAP/Arg decarboxylase 2	K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C    00480 Glutathione metabolism [PATH:dol00480]
D      Dole_1463 glutamate--cysteine ligase GCS2	K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D      Dole_1908 isocitrate dehydrogenase, NADP-dependent	K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D      Dole_2430 Spermine synthase	K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B  09107 Glycan biosynthesis and metabolism
C    00510 N-Glycan biosynthesis
C    00513 Various types of N-glycan biosynthesis
C    00512 Mucin type O-glycan biosynthesis
C    00515 Mannose type O-glycan biosynthesis
C    00514 Other types of O-glycan biosynthesis
D      Dole_1087 Tetratricopeptide TPR_2 repeat protein	K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
C    00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C    00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C    00533 Glycosaminoglycan biosynthesis - keratan sulfate
C    00531 Glycosaminoglycan degradation
C    00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C    00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C    00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C    00604 Glycosphingolipid biosynthesis - ganglio series
C    00511 Other glycan degradation
C    00540 Lipopolysaccharide biosynthesis [PATH:dol00540]
D      Dole_2840 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase	K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D      Dole_2736 UDP-3-0-acyl N-acetylglucosamine deacetylase	K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D      Dole_2842 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase	K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D      Dole_2839 protein of unknown function DUF1009	K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D      Dole_2837 lipid-A-disaccharide synthase	K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D      Dole_2110 KpsF/GutQ family protein	K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D      Dole_0511 2-dehydro-3-deoxyphosphooctonate aldolase	K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D      Dole_0510 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family	K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D      Dole_0968 3-deoxy-D-manno-octulosonate cytidylyltransferase	K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D      Dole_1762 Three-deoxy-D-manno-octulosonic-acid transferase domain protein	K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D      Dole_1445 lipid A biosynthesis acyltransferase	K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D      Dole_2674 histidinol-phosphate phosphatase family protein	K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D      Dole_1710 GHMP kinase	K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
D      Dole_1436 O-antigen polymerase	K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C    00542 O-Antigen repeat unit biosynthesis
C    00541 O-Antigen nucleotide sugar biosynthesis [PATH:dol00541]
D      Dole_1848 UDP-glucose 4-epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      Dole_0560 NAD-dependent epimerase/dehydratase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      Dole_0523 NAD-dependent epimerase/dehydratase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      Dole_1279 UDP-glucose 6-dehydrogenase	K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D      Dole_2324 NAD-dependent epimerase/dehydratase	K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D      Dole_1011 glucose-1-phosphate thymidylyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      Dole_1010 dTDP-glucose 4,6-dehydratase	K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D      Dole_1961 dTDP-4-dehydrorhamnose 3,5-epimerase	K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D      Dole_1012 dTDP-4-dehydrorhamnose 3,5-epimerase	K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D      Dole_2525 dTDP-4-dehydrorhamnose reductase	K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D      Dole_1959 glucose-1-phosphate cytidylyltransferase	K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D      Dole_1960 CDP-glucose 4,6-dehydratase	K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D      Dole_0520 NAD-dependent epimerase/dehydratase	K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
D      Dole_2015 mannose-6-phosphate isomerase, class I	K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D      Dole_2031 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D      Dole_1968 NAD-dependent epimerase/dehydratase	K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D      Dole_1281 GDP-mannose 4,6-dehydratase	K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D      Dole_1282 NAD-dependent epimerase/dehydratase	K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D      Dole_2025 UDP-N-acetylglucosamine pyrophosphorylase	K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D      Dole_1299 NAD-dependent epimerase/dehydratase	K24310 wbpV; UDP-N-acetyl-alpha-D-quinovosamine dehydrogenase [EC:1.1.1.426]
D      Dole_1818 UDP-glucose/GDP-mannose dehydrogenase	K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D      Dole_2167 UDP-glucose/GDP-mannose dehydrogenase	K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D      Dole_1819 oxidoreductase domain protein	K13016 wbpB; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D      Dole_1837 DegT/DnrJ/EryC1/StrS aminotransferase	K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D      Dole_1820 transferase hexapeptide repeat containing protein	K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D      Dole_1824 transferase hexapeptide repeat containing protein	K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D      Dole_1828 UDP-N-acetylglucosamine 2-epimerase	K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23]
C    00550 Peptidoglycan biosynthesis [PATH:dol00550]
D      Dole_2551 UDP-N-acetylglucosamine 1-carboxyvinyltransferase	K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D      Dole_2785 UDP-N-acetylenolpyruvoylglucosamine reductase	K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D      Dole_2786 UDP-N-acetylmuramate--alanine ligase	K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D      Dole_2789 UDP-N-acetylmuramoylalanine--D-glutamate ligase	K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D      Dole_2792 UDP-N-acetylmuramyl-tripeptide synthetase	K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D      Dole_1426 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_2749 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_1891 GCN5-related N-acetyltransferase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_2791 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase	K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D      Dole_0478 undecaprenyl diphosphate synthase	K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D      Dole_1174 Bacitracin resistance protein BacA	K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D      Dole_2790 phospho-N-acetylmuramoyl-pentapeptide-transferase	K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D      Dole_2787 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D      Dole_2534 penicillin-binding protein, 1A family	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      Dole_0135 penicillin-binding protein, 1A family	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      Dole_0908 penicillin-binding protein, 1A family	K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D      Dole_0595 Peptidoglycan glycosyltransferase	K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D      Dole_2793 Peptidoglycan glycosyltransferase	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D      Dole_2225 peptidase S13 D-Ala-D-Ala carboxypeptidase C	K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D      Dole_0591 beta-lactamase	K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
C    00552 Teichoic acid biosynthesis [PATH:dol00552]
D      Dole_1174 Bacitracin resistance protein BacA	K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C    00571 Lipoarabinomannan (LAM) biosynthesis
C    00572 Arabinogalactan biosynthesis - Mycobacterium
C    00543 Exopolysaccharide biosynthesis
B
B  09108 Metabolism of cofactors and vitamins
C    00730 Thiamine metabolism [PATH:dol00730]
D      Dole_2427 thiamine biosynthesis protein ThiC	K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D      Dole_2517 phosphomethylpyrimidine kinase	K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D      Dole_2243 aminotransferase class V	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      Dole_0756 aminotransferase class V	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      Dole_1662 deoxyxylulose-5-phosphate synthase	K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D      Dole_2426 thiazole biosynthesis enzyme	K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59]
D      Dole_0749 Hydroxyethylthiazole kinase	K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D      Dole_1765 thiamine-phosphate pyrophosphorylase	K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D      Dole_2800 GTPase EngC	K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D      Dole_0469 adenylate kinase	K00939 adk; adenylate kinase [EC:2.7.4.3]
D      Dole_1146 Adenylate kinase and related kinase-like protein	K00939 adk; adenylate kinase [EC:2.7.4.3]
C    00740 Riboflavin metabolism [PATH:dol00740]
D      Dole_2077 3,4-dihydroxy-2-butanone 4-phosphate synthase	K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D      Dole_2079 riboflavin biosynthesis protein RibD	K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D      Dole_2076 6,7-dimethyl-8-ribityllumazine synthase	K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D      Dole_2078 riboflavin synthase, alpha subunit	K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D      Dole_2234 riboflavin biosynthesis protein RibF	K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D      Dole_0749 Hydroxyethylthiazole kinase	K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D      Dole_1905 NUDIX hydrolase	K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D      Dole_3211 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C    00750 Vitamin B6 metabolism [PATH:dol00750]
D      Dole_2195 glyceraldehyde 3-phosphate dehydrogenase	K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D      Dole_3221 phosphoserine aminotransferase	K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D      Dole_0633 4-hydroxythreonine-4-phosphate dehydrogenase	K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D      Dole_0776 Pyridoxal phosphate biosynthetic protein PdxJ	K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D      Dole_2746 threonine synthase	K01733 thrC; threonine synthase [EC:4.2.3.1]
C    00760 Nicotinate and nicotinamide metabolism [PATH:dol00760]
D      Dole_1490 L-aspartate oxidase	K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D      Dole_0379 quinolinate synthetase complex, A subunit	K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D      Dole_1728 nicotinate-nucleotide pyrophosphorylase	K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D      Dole_0388 nicotinate phosphoribosyltransferase	K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D      Dole_1163 stationary-phase survival protein SurE	K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D      Dole_0091 nicotinate (nicotinamide) nucleotide adenylyltransferase	K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D      Dole_0781 MazG family protein	K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D      Dole_0568 NAD+ synthetase	K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D      Dole_1112 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D      Dole_3228 Silent information regulator protein Sir2	K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D      Dole_2582 ATP-NAD/AcoX kinase	K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C    00770 Pantothenate and CoA biosynthesis [PATH:dol00770]
D      Dole_2037 acetolactate synthase, large subunit, biosynthetic type	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      Dole_2038 acetolactate synthase, small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D      Dole_2039 ketol-acid reductoisomerase	K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D      Dole_2036 dihydroxy-acid dehydratase	K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D      Dole_1084 3-methyl-2-oxobutanoate hydroxymethyltransferase	K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D      Dole_1979 2-dehydropantoate 2-reductase	K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D      Dole_0042 pantoate--beta-alanine ligase	K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D      Dole_3046 putative transcriptional acitvator, Baf family	K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D      Dole_1592 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase	K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D      Dole_0781 MazG family protein	K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D      Dole_2741 pantetheine-phosphate adenylyltransferase	K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D      Dole_2184 dephospho-CoA kinase	K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D      Dole_3064 4'-phosphopantetheinyl transferase	K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D      Dole_2663 branched-chain amino acid aminotransferase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C    00780 Biotin metabolism [PATH:dol00780]
D      Dole_1608 short-chain dehydrogenase/reductase SDR	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      Dole_2084 3-oxoacyl-(acyl-carrier-protein) reductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      Dole_2622 short-chain dehydrogenase/reductase SDR	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      Dole_2841 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ	K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D      Dole_0680 8-amino-7-oxononanoate synthase	K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D      Dole_0679 adenosylmethionine-8-amino-7-oxononanoate aminotransferase	K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D      Dole_0681 dethiobiotin synthase	K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D      Dole_0682 biotin synthase	K01012 bioB; biotin synthase [EC:2.8.1.6]
D      Dole_3188 Radical SAM domain protein	K01012 bioB; biotin synthase [EC:2.8.1.6]
D      Dole_0391 biotin--acetyl-CoA-carboxylase ligase	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C    00785 Lipoic acid metabolism
C    00790 Folate biosynthesis [PATH:dol00790]
D      Dole_2224 protein of unknown function DUF198	K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D      Dole_2488 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D      Dole_3045 dihydropteroate synthase	K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D      Dole_0467 FolC bifunctional protein	K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D      Dole_2077 3,4-dihydroxy-2-butanone 4-phosphate synthase	K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D      Dole_1098 glutamine amidotransferase of anthranilate synthase	K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D      Dole_1097 para-aminobenzoate synthase, subunit I	K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D      Dole_1493 6-pyruvoyl tetrahydropterin synthase and hypothetical protein	K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D      Dole_0497 Radical SAM domain protein	K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D      Dole_0496 exsB protein	K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D      Dole_2198 GTP cyclohydrolase I	K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D      Dole_0791 beta-lactamase domain protein	K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D      Dole_1937 beta-lactamase domain protein	K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D      Dole_2859 molybdenum cofactor biosynthesis protein A	K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D      Dole_3173 molybdenum cofactor biosynthesis protein C	K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D      Dole_3196 molybdenum cofactor synthesis domain	K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D      Dole_0683 molybdenum cofactor synthesis domain	K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D      Dole_0684 molybdenum cofactor synthesis domain	K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D      Dole_0202 molybdenum cofactor synthesis domain	K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D      Dole_0063 molybdenum cofactor synthesis domain	K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D      Dole_3175 molybdopterin-guanine dinucleotide biosynthesis protein A	K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C    00670 One carbon pool by folate [PATH:dol00670]
D      Dole_3059 Formate--tetrahydrofolate ligase	K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D      Dole_2033 Methenyltetrahydrofolate cyclohydrolase	K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D      Dole_2082 Glycine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      Dole_1645 phosphoribosylglycinamide formyltransferase	K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D      Dole_1516 Phosphoribosylaminoimidazolecarboxamide formyltransferase	K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D      Dole_2232 methionyl-tRNA formyltransferase	K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D      Dole_1745 thymidylate synthase-like protein	K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D      Dole_2330 Methylenetetrahydrofolate reductase (NAD(P)H)	K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D      Dole_0458 methylenetetrahydrofolate reductase	K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D      Dole_1151 methylenetetrahydrofolate reductase	K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D      Dole_2744 5-formyltetrahydrofolate cyclo-ligase	K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C    00830 Retinol metabolism
C    00860 Porphyrin metabolism [PATH:dol00860]
D      Dole_2533 glutamyl-tRNA synthetase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      Dole_3238 glutamyl-tRNA reductase	K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D      Dole_1545 glutamate-1-semialdehyde-2,1-aminomutase	K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D      Dole_1132 aminotransferase class-III	K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D      Dole_1224 Porphobilinogen synthase	K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D      Dole_0963 porphobilinogen deaminase	K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D      Dole_2957 Uroporphyrinogen-III decarboxylase-like protein	K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D      Dole_0062 Uroporphyrinogen decarboxylase (URO-D)	K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D      Dole_3062 uroporphyrin-III C-methyltransferase	K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D      Dole_3236 siroheme synthase	K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D      Dole_0464 putative transcriptional regulator, AsnC family	K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D      Dole_2996 putative transcriptional regulator, AsnC family	K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D      Dole_1225 Radical SAM domain protein	K22226 ahbC; Fe-coproporphyrin III synthase
D      Dole_2761 Radical SAM domain protein	K22226 ahbC; Fe-coproporphyrin III synthase
D      Dole_1223 Radical SAM domain protein	K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D      Dole_2672 cobyrinic acid a,c-diamide synthase	K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D      Dole_1228 cob(I)alamin adenosyltransferase	K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D      Dole_1734 cobyric acid synthase CobQ	K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D      Dole_1233 cobalamin biosynthesis protein CobD	K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D      Dole_1229 Adenosylcobinamide-phosphate guanylyltransferase	K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D      Dole_1230 cobalamin 5'-phosphate synthase	K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D      Dole_2597 Xylose isomerase domain protein TIM barrel	K25496 cbiR; adenosylcobalamin phosphodiesterase
D      Dole_2065 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D      Dole_1231 aminotransferase class I and II	K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
C    00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:dol00130]
D      Dole_3210 4-hydroxybenzoate polyprenyltransferase, putative	K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D      Dole_3212 UbiD family decarboxylase	K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D      Dole_3211 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D      Dole_1491 ubiquinone/menaquinone biosynthesis methyltransferase	K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D      Dole_1276 protein of unknown function DUF178	K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D      Dole_1271 Radical SAM domain protein	K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D      Dole_1275 amidohydrolase	K20810 mqnX; aminodeoxyfutalosine deaminase [EC:3.5.4.40]
D      Dole_1278 purine or other phosphorylase family 1	K11783 mqnB; futalosine hydrolase [EC:3.2.2.26]
D      Dole_1272 Radical SAM domain protein	K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D      Dole_1277 protein of unknown function DUF191	K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
D      Dole_0071 NADPH-dependent FMN reductase	K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B  09109 Metabolism of terpenoids and polyketides
C    00900 Terpenoid backbone biosynthesis [PATH:dol00900]
D      Dole_1662 deoxyxylulose-5-phosphate synthase	K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D      Dole_0480 1-deoxy-D-xylulose 5-phosphate reductoisomerase	K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D      Dole_2147 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D      Dole_2816 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D      Dole_1666 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D      Dole_2059 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_3211 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D      Dole_1663 Polyprenyl synthetase	K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D      Dole_3230 Polyprenyl synthetase	K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D      Dole_0478 undecaprenyl diphosphate synthase	K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D      Dole_0495 Ste24 endopeptidase	K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
C    00902 Monoterpenoid biosynthesis
C    00909 Sesquiterpenoid and triterpenoid biosynthesis
C    00904 Diterpenoid biosynthesis
C    00906 Carotenoid biosynthesis
C    00905 Brassinosteroid biosynthesis
C    00981 Insect hormone biosynthesis
C    00908 Zeatin biosynthesis
C    00903 Limonene degradation [PATH:dol00903]
D      Dole_0854 Alpha/beta hydrolase fold-3 domain protein	K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
D      Dole_1618 Alpha/beta hydrolase fold-3 domain protein	K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
C    00907 Pinene, camphor and geraniol degradation [PATH:dol00907]
D      Dole_0224 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      Dole_0156 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C    01052 Type I polyketide structures
C    00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C    01051 Biosynthesis of ansamycins
D      Dole_1130 Transketolase central region	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      Dole_1131 Transketolase domain protein	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      Dole_0367 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C    01059 Biosynthesis of enediyne antibiotics
C    01056 Biosynthesis of type II polyketide backbone
C    01057 Biosynthesis of type II polyketide products
C    00253 Tetracycline biosynthesis
C    00523 Polyketide sugar unit biosynthesis [PATH:dol00523]
D      Dole_1011 glucose-1-phosphate thymidylyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      Dole_1010 dTDP-glucose 4,6-dehydratase	K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D      Dole_1961 dTDP-4-dehydrorhamnose 3,5-epimerase	K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D      Dole_1012 dTDP-4-dehydrorhamnose 3,5-epimerase	K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D      Dole_2525 dTDP-4-dehydrorhamnose reductase	K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C    01054 Nonribosomal peptide structures
C    01053 Biosynthesis of siderophore group nonribosomal peptides
C    01055 Biosynthesis of vancomycin group antibiotics
D      Dole_1010 dTDP-glucose 4,6-dehydratase	K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B  09110 Biosynthesis of other secondary metabolites
C    00940 Phenylpropanoid biosynthesis
C    00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C    00941 Flavonoid biosynthesis
C    00944 Flavone and flavonol biosynthesis
C    00942 Anthocyanin biosynthesis
C    00943 Isoflavonoid biosynthesis
C    00946 Degradation of flavonoids
C    00901 Indole alkaloid biosynthesis
C    00403 Indole diterpene alkaloid biosynthesis
C    00950 Isoquinoline alkaloid biosynthesis
C    00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C    00996 Biosynthesis of various alkaloids
C    00232 Caffeine metabolism
C    00965 Betalain biosynthesis
C    00966 Glucosinolate biosynthesis
C    00402 Benzoxazinoid biosynthesis
C    00311 Penicillin and cephalosporin biosynthesis
C    00332 Carbapenem biosynthesis [PATH:dol00332]
D      Dole_0089 glutamate 5-kinase	K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D      Dole_0090 gamma-glutamyl phosphate reductase	K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C    00261 Monobactam biosynthesis [PATH:dol00261]
D      Dole_1002 sulfate adenylyltransferase	K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D      Dole_1013 sulfate adenylyltransferase	K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D      Dole_0959 aspartate/glutamate/uridylate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      Dole_0773 aspartate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      Dole_2220 aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      Dole_2667 dihydrodipicolinate synthase	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      Dole_1396 dihydrodipicolinate reductase	K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C    00331 Clavulanic acid biosynthesis
C    00521 Streptomycin biosynthesis [PATH:dol00521]
D      Dole_1175 Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      Dole_0004 Inositol-phosphate phosphatase	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D      Dole_1011 glucose-1-phosphate thymidylyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      Dole_1010 dTDP-glucose 4,6-dehydratase	K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D      Dole_1961 dTDP-4-dehydrorhamnose 3,5-epimerase	K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D      Dole_1012 dTDP-4-dehydrorhamnose 3,5-epimerase	K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D      Dole_2525 dTDP-4-dehydrorhamnose reductase	K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C    00524 Neomycin, kanamycin and gentamicin biosynthesis
C    00525 Acarbose and validamycin biosynthesis [PATH:dol00525]
D      Dole_1011 glucose-1-phosphate thymidylyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      Dole_1010 dTDP-glucose 4,6-dehydratase	K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C    00401 Novobiocin biosynthesis [PATH:dol00401]
D      Dole_1946 Prephenate dehydrogenase	K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D      Dole_0081 aminotransferase class I and II	K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D      Dole_1983 histidinol-phosphate aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C    00404 Staurosporine biosynthesis
C    00405 Phenazine biosynthesis [PATH:dol00405]
D      Dole_1569 Anthranilate synthase	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      Dole_1568 glutamine amidotransferase of anthranilate synthase	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D      Dole_1494 beta-lactamase domain protein	K20257 pqsE; 2-aminobenzoylacetyl-CoA thioesterase [EC:3.1.2.32]
C    00333 Prodigiosin biosynthesis
D      Dole_1608 short-chain dehydrogenase/reductase SDR	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      Dole_2084 3-oxoacyl-(acyl-carrier-protein) reductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      Dole_2622 short-chain dehydrogenase/reductase SDR	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C    00254 Aflatoxin biosynthesis
C    00998 Biosynthesis of various antibiotics
D      Dole_2083 acyl carrier protein	K02078 acpP; acyl carrier protein
C    00999 Biosynthesis of various plant secondary metabolites [PATH:dol00999]
D      Dole_2850 Methionine adenosyltransferase	K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D      Dole_3109 shikimate 5-dehydrogenase	K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C    00997 Biosynthesis of various other secondary metabolites
B
B  09111 Xenobiotics biodegradation and metabolism
C    00362 Benzoate degradation [PATH:dol00362]
D      Dole_0224 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      Dole_0156 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      Dole_2770 2-hydroxyglutaryl-CoA dehydratase D-component	K04113 bcrB; benzoyl-CoA reductase subunit B [EC:1.3.7.8]
D      Dole_0155 3-hydroxyacyl-CoA dehydrogenase NAD-binding	K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D      Dole_2282 sodium ion-translocating decarboxylase, beta subunit	K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D      Dole_0271 3-hydroxybutyryl-CoA dehydrogenase	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      Dole_0830 3-hydroxyacyl-CoA dehydrogenase NAD-binding	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      Dole_1683 3-hydroxyacyl-CoA dehydrogenase NAD-binding	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C    00627 Aminobenzoate degradation [PATH:dol00627]
D      Dole_1076 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_0166 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_2535 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_1716 acylphosphatase	K01512 acyP; acylphosphatase [EC:3.6.1.7]
D      Dole_3211 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C    00364 Fluorobenzoate degradation
C    00625 Chloroalkane and chloroalkene degradation [PATH:dol00625]
D      Dole_2290 iron-containing alcohol dehydrogenase	K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C    00361 Chlorocyclohexane and chlorobenzene degradation
C    00623 Toluene degradation
C    00622 Xylene degradation
C    00633 Nitrotoluene degradation [PATH:dol00633]
D      Dole_1461 carbon-monoxide dehydrogenase, catalytic subunit	K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D      Dole_3185 carbon-monoxide dehydrogenase, catalytic subunit	K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D      Dole_1392 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      Dole_1391 thiamine pyrophosphate protein domain protein TPP-binding	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      Dole_1394 pyruvate/ketoisovalerate oxidoreductase, gamma subunit	K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D      Dole_1393 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit	K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D      Dole_2669 sulfite reductase, dissimilatory-type alpha subunit	K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D      Dole_2670 sulfite reductase, dissimilatory-type beta subunit	K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
C    00642 Ethylbenzene degradation
D      Dole_0224 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      Dole_0156 acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C    00643 Styrene degradation [PATH:dol00643]
D      Dole_1076 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_0166 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      Dole_2535 Amidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C    00791 Atrazine degradation
C    00930 Caprolactam degradation
D      Dole_0854 Alpha/beta hydrolase fold-3 domain protein	K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
D      Dole_1618 Alpha/beta hydrolase fold-3 domain protein	K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
C    00363 Bisphenol degradation
C    00621 Dioxin degradation
C    00626 Naphthalene degradation [PATH:dol00626]
D      Dole_2290 iron-containing alcohol dehydrogenase	K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C    00624 Polycyclic aromatic hydrocarbon degradation
C    00365 Furfural degradation
C    00984 Steroid degradation
C    00980 Metabolism of xenobiotics by cytochrome P450
C    00982 Drug metabolism - cytochrome P450
C    00983 Drug metabolism - other enzymes
B
B  09112 Not included in regular maps
C    09113 Global maps only
#
A09120 Genetic Information Processing
B
B  09121 Transcription
C    03020 RNA polymerase [PATH:dol03020]
D      Dole_0702 DNA-directed RNA polymerase, beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D      Dole_0703 DNA-directed RNA polymerase, beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D      Dole_0733 DNA-directed RNA polymerase, alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D      Dole_2222 DNA-directed RNA polymerase, omega subunit	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C    03022 Basal transcription factors
C    03040 Spliceosome
B
B  09122 Translation
C    03010 Ribosome [PATH:dol03010]
D      Dole_1981 ribosomal protein S1	K02945 RP-S1; small subunit ribosomal protein S1
D      Dole_2122 RNA binding S1 domain protein	K02945 RP-S1; small subunit ribosomal protein S1
D      Dole_0474 ribosomal protein S2	K02967 RP-S2; small subunit ribosomal protein S2
D      Dole_0714 ribosomal protein S3	K02982 RP-S3; small subunit ribosomal protein S3
D      Dole_0732 RNA-binding S4 domain protein	K02986 RP-S4; small subunit ribosomal protein S4
D      Dole_0725 ribosomal protein S5	K02988 RP-S5; small subunit ribosomal protein S5
D      Dole_0010 ribosomal protein S6	K02990 RP-S6; small subunit ribosomal protein S6
D      Dole_0705 ribosomal protein S7	K02992 RP-S7; small subunit ribosomal protein S7
D      Dole_0722 ribosomal protein S8	K02994 RP-S8; small subunit ribosomal protein S8
D      Dole_0945 ribosomal protein S9	K02996 RP-S9; small subunit ribosomal protein S9
D      Dole_0707 ribosomal protein S10	K02946 RP-S10; small subunit ribosomal protein S10
D      Dole_0731 ribosomal protein S11	K02948 RP-S11; small subunit ribosomal protein S11
D      Dole_0704 ribosomal protein S12	K02950 RP-S12; small subunit ribosomal protein S12
D      Dole_0730 ribosomal protein S13	K02952 RP-S13; small subunit ribosomal protein S13
D      Dole_0721 ribosomal protein S14	K02954 RP-S14; small subunit ribosomal protein S14
D      Dole_3030 ribosomal protein S15	K02956 RP-S15; small subunit ribosomal protein S15
D      Dole_2309 ribosomal protein S16	K02959 RP-S16; small subunit ribosomal protein S16
D      Dole_0717 ribosomal protein S17	K02961 RP-S17; small subunit ribosomal protein S17
D      Dole_0009 ribosomal protein S18	K02963 RP-S18; small subunit ribosomal protein S18
D      Dole_0712 ribosomal protein S19	K02965 RP-S19; small subunit ribosomal protein S19
D      Dole_2436 ribosomal protein S20	K02968 RP-S20; small subunit ribosomal protein S20
D      Dole_0468 ribosomal protein S21	K02970 RP-S21; small subunit ribosomal protein S21
D      Dole_0699 ribosomal protein L1	K02863 RP-L1; large subunit ribosomal protein L1
D      Dole_0711 ribosomal protein L2	K02886 RP-L2; large subunit ribosomal protein L2
D      Dole_0708 ribosomal protein L3	K02906 RP-L3; large subunit ribosomal protein L3
D      Dole_0709 ribosomal protein L4/L1e	K02926 RP-L4; large subunit ribosomal protein L4
D      Dole_0720 ribosomal protein L5	K02931 RP-L5; large subunit ribosomal protein L5
D      Dole_0723 ribosomal protein L6	K02933 RP-L6; large subunit ribosomal protein L6
D      Dole_0701 ribosomal protein L7/L12	K02935 RP-L7; large subunit ribosomal protein L7/L12
D      Dole_0007 ribosomal protein L9	K02939 RP-L9; large subunit ribosomal protein L9
D      Dole_0700 ribosomal protein L10	K02864 RP-L10; large subunit ribosomal protein L10
D      Dole_0698 ribosomal protein L11	K02867 RP-L11; large subunit ribosomal protein L11
D      Dole_0946 ribosomal protein L13	K02871 RP-L13; large subunit ribosomal protein L13
D      Dole_0718 ribosomal protein L14	K02874 RP-L14; large subunit ribosomal protein L14
D      Dole_0727 ribosomal protein L15	K02876 RP-L15; large subunit ribosomal protein L15
D      Dole_0715 ribosomal protein L16	K02878 RP-L16; large subunit ribosomal protein L16
D      Dole_0734 ribosomal protein L17	K02879 RP-L17; large subunit ribosomal protein L17
D      Dole_0724 ribosomal protein L18	K02881 RP-L18; large subunit ribosomal protein L18
D      Dole_2304 ribosomal protein L19	K02884 RP-L19; large subunit ribosomal protein L19
D      Dole_3041 ribosomal protein L20	K02887 RP-L20; large subunit ribosomal protein L20
D      Dole_0086 ribosomal protein L21	K02888 RP-L21; large subunit ribosomal protein L21
D      Dole_0713 ribosomal protein L22	K02890 RP-L22; large subunit ribosomal protein L22
D      Dole_0710 Ribosomal protein L25/L23	K02892 RP-L23; large subunit ribosomal protein L23
D      Dole_0719 ribosomal protein L24	K02895 RP-L24; large subunit ribosomal protein L24
D      Dole_2818 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5	K02897 RP-L25; large subunit ribosomal protein L25
D      Dole_0087 ribosomal protein L27	K02899 RP-L27; large subunit ribosomal protein L27
D      Dole_2056 ribosomal protein L28	K02902 RP-L28; large subunit ribosomal protein L28
D      Dole_0716 ribosomal protein L29	K02904 RP-L29; large subunit ribosomal protein L29
D      Dole_0726 ribosomal protein L30	K02907 RP-L30; large subunit ribosomal protein L30
D      Dole_0471 ribosomal protein L31	K02909 RP-L31; large subunit ribosomal protein L31
D      Dole_2085 ribosomal protein L32	K02911 RP-L32; large subunit ribosomal protein L32
D      Dole_0099 ribosomal protein L34	K02914 RP-L34; large subunit ribosomal protein L34
D      Dole_3042 ribosomal protein L35	K02916 RP-L35; large subunit ribosomal protein L35
D      Dole_R0011 16S ribosomal RNA	K01977 16SrRNA; 16S ribosomal RNA
D      Dole_R0014 23S ribosomal RNA	K01980 23SrRNA; 23S ribosomal RNA
D      Dole_R0015 5S ribosomal RNA	K01985 5SrRNA; 5S ribosomal RNA
C    00970 Aminoacyl-tRNA biosynthesis [PATH:dol00970]
D      Dole_R0047 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      Dole_R0013 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      Dole_R0034 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      Dole_R0038 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      Dole_R0023 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      Dole_R0049 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      Dole_R0016 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      Dole_R0007 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      Dole_R0004 tRNA-Asn	K14220 tRNA-Asn; tRNA Asn
D      Dole_R0043 tRNA-Asp	K14221 tRNA-Asp; tRNA Asp
D      Dole_R0030 tRNA-Cys	K14222 tRNA-Cys; tRNA Cys
D      Dole_R0046 tRNA-Gln	K14223 tRNA-Gln; tRNA Gln
D      Dole_R0039 tRNA-Gln	K14223 tRNA-Gln; tRNA Gln
D      Dole_R0052 tRNA-Glu	K14224 tRNA-Glu; tRNA Glu
D      Dole_R0044 tRNA-Glu	K14224 tRNA-Glu; tRNA Glu
D      Dole_R0031 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      Dole_R0048 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      Dole_R0019 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      Dole_R0050 tRNA-His	K14226 tRNA-His; tRNA His
D      Dole_R0012 tRNA-Ile	K14227 tRNA-Ile; tRNA Ile
D      Dole_R0025 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      Dole_R0022 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      Dole_R0036 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      Dole_R0008 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      Dole_R0041 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      Dole_R0053 tRNA-Lys	K14229 tRNA-Lys; tRNA Lys
D      Dole_R0037 tRNA-Lys	K14229 tRNA-Lys; tRNA Lys
D      Dole_R0024 tRNA-Met	K14230 tRNA-Met; tRNA Met
D      Dole_R0005 tRNA-Met	K14230 tRNA-Met; tRNA Met
D      Dole_R0033 tRNA-Met	K14230 tRNA-Met; tRNA Met
D      Dole_R0027 tRNA-Phe	K14231 tRNA-Phe; tRNA Phe
D      Dole_R0051 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      Dole_R0040 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      Dole_R0029 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      Dole_R0009 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      Dole_R0010 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      Dole_R0002 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      Dole_R0003 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      Dole_R0020 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      Dole_R0017 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      Dole_R0026 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      Dole_R0021 tRNA-Trp	K14235 tRNA-Trp; tRNA Trp
D      Dole_R0018 tRNA-Tyr	K14236 tRNA-Tyr; tRNA Tyr
D      Dole_R0045 tRNA-Val	K14237 tRNA-Val; tRNA Val
D      Dole_R0042 tRNA-Val	K14237 tRNA-Val; tRNA Val
D      Dole_R0028 tRNA-Val	K14237 tRNA-Val; tRNA Val
D      Dole_R0035 tRNA-Sec	K14238 tRNA-Sec; tRNA Sec
D      Dole_2533 glutamyl-tRNA synthetase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      Dole_0151 glutamyl-tRNA(Gln) amidotransferase, A subunit	K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D      Dole_0013 glutamyl-tRNA(Gln) amidotransferase, B subunit	K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D      Dole_0152 glutamyl-tRNA(Gln) amidotransferase, C subunit	K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D      Dole_1595 glutaminyl-tRNA synthetase	K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D      Dole_1268 alanyl-tRNA synthetase	K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D      Dole_0670 aspartyl-tRNA synthetase	K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D      Dole_0096 asparaginyl-tRNA synthetase	K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D      Dole_1711 glycyl-tRNA synthetase, alpha subunit	K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D      Dole_1712 glycyl-tRNA synthetase, beta subunit	K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D      Dole_3194 threonyl-tRNA synthetase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      Dole_2745 seryl-tRNA synthetase	K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D      Dole_3060 L-seryl-tRNA(Sec) selenium transferase	K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D      Dole_1166 cysteine synthase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      Dole_1667 cysteinyl-tRNA synthetase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      Dole_3204 methionyl-tRNA synthetase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D      Dole_2232 methionyl-tRNA formyltransferase	K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D      Dole_1729 valyl-tRNA synthetase	K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D      Dole_2438 leucyl-tRNA synthetase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      Dole_1191 isoleucyl-tRNA synthetase	K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D      Dole_2847 lysyl-tRNA synthetase	K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D      Dole_3215 arginyl-tRNA synthetase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      Dole_2058 prolyl-tRNA synthetase	K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D      Dole_0669 histidyl-tRNA synthetase	K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D      Dole_3040 phenylalanyl-tRNA synthetase, alpha subunit	K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D      Dole_3039 phenylalanyl-tRNA synthetase, beta subunit	K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D      Dole_0609 tyrosyl-tRNA synthetase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      Dole_2757 tryptophanyl-tRNA synthetase	K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C    03013 Nucleocytoplasmic transport
C    03015 mRNA surveillance pathway
C    03008 Ribosome biogenesis in eukaryotes
B
B  09123 Folding, sorting and degradation
C    03060 Protein export [PATH:dol03060]
D      Dole_0728 preprotein translocase, SecY subunit	K03076 secY; preprotein translocase subunit SecY
D      Dole_0696 preprotein translocase, SecE subunit	K03073 secE; preprotein translocase subunit SecE
D      Dole_0498 preprotein translocase, SecG subunit	K03075 secG; preprotein translocase subunit SecG
D      Dole_2442 protein-export membrane protein SecD	K03072 secD; preprotein translocase subunit SecD
D      Dole_2443 protein-export membrane protein SecF	K03074 secF; preprotein translocase subunit SecF
D      Dole_2441 preprotein translocase, YajC subunit	K03210 yajC; preprotein translocase subunit YajC
D      Dole_0102 60 kDa inner membrane insertion protein	K03217 yidC; YidC/Oxa1 family membrane protein insertase
D      Dole_0620 SecA DEAD domain protein	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      Dole_2483 preprotein translocase, SecA subunit	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      Dole_2310 signal recognition particle protein	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D      Dole_R0001 ffs; SRP RNA; RNA component of signal recognition particle	K01983 ffs; SRP RNA
D      Dole_1718 signal recognition particle-docking protein FtsY	K03110 ftsY; fused signal recognition particle receptor
D      Dole_0188 twin-arginine translocation protein, TatA/E family subunit	K03116 tatA; sec-independent protein translocase protein TatA
D      Dole_0045 twin-arginine translocation protein, TatA/E family subunit	K03116 tatA; sec-independent protein translocase protein TatA
D      Dole_3172 twin-arginine translocation protein, TatA/E family subunit	K03117 tatB; sec-independent protein translocase protein TatB
D      Dole_3171 Sec-independent protein translocase, TatC subunit	K03118 tatC; sec-independent protein translocase protein TatC
D      Dole_0513 signal peptidase I	K03100 lepB; signal peptidase I [EC:3.4.21.89]
D      Dole_0321 signal peptidase I	K03100 lepB; signal peptidase I [EC:3.4.21.89]
D      Dole_1190 lipoprotein signal peptidase	K03101 lspA; signal peptidase II [EC:3.4.23.36]
C    04141 Protein processing in endoplasmic reticulum
C    04130 SNARE interactions in vesicular transport
C    04120 Ubiquitin mediated proteolysis
C    04122 Sulfur relay system [PATH:dol04122]
D      Dole_2243 aminotransferase class V	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      Dole_0756 aminotransferase class V	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      Dole_2805 Rhodanese domain protein	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      Dole_1750 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D      Dole_2859 molybdenum cofactor biosynthesis protein A	K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D      Dole_2503 thiamineS protein	K03636 moaD; sulfur-carrier protein
D      Dole_2504 UBA/THIF-type NAD/FAD binding protein	K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D      Dole_3173 molybdenum cofactor biosynthesis protein C	K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D      Dole_3196 molybdenum cofactor synthesis domain	K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
C    03050 Proteasome
C    03018 RNA degradation [PATH:dol03018]
D      Dole_2439 ribonuclease, Rne/Rng family	K08300 rne; ribonuclease E [EC:3.1.26.12]
D      Dole_0054 DEAD/DEAH box helicase domain protein	K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D      Dole_0339 Phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      Dole_3029 Polyribonucleotide nucleotidyltransferase	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D      Dole_2349 DEAD/DEAH box helicase domain protein	K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D      Dole_0470 transcription termination factor Rho	K03628 rho; transcription termination factor Rho
D      Dole_0608 RNA binding metal dependent phosphohydrolase	K18682 rny; ribonucrease Y [EC:3.1.-.-]
D      Dole_2585 beta-lactamase domain protein	K12574 rnj; ribonuclease J [EC:3.1.-.-]
D      Dole_0260 beta-lactamase domain protein	K12574 rnj; ribonuclease J [EC:3.1.-.-]
D      Dole_2111 Diphosphate--fructose-6-phosphate 1-phosphotransferase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D      Dole_0070 chaperone protein DnaK	K04043 dnaK; molecular chaperone DnaK
D      Dole_2982 Heat shock protein 70	K04043 dnaK; molecular chaperone DnaK
D      Dole_0550 chaperonin GroEL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D      Dole_0973 polynucleotide adenylyltransferase/metal dependent phosphohydrolase	K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B  09124 Replication and repair
C    03030 DNA replication [PATH:dol03030]
D      Dole_1885 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      Dole_0261 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      Dole_0542 DNA polymerase III, subunits gamma and tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D      Dole_3206 DNA polymerase III, delta prime subunit	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D      Dole_1188 DNA polymerase III delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D      Dole_0094 DNA polymerase III, beta subunit	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D      Dole_0006 replicative DNA helicase	K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D      Dole_2153 DNA primase	K02316 dnaG; DNA primase [EC:2.7.7.101]
D      Dole_0044 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_2923 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_2729 Ribonuclease H	K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D      Dole_1985 ribonuclease H	K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D      Dole_2303 Ribonuclease H	K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D      Dole_2573 DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      Dole_1715 DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C    03410 Base excision repair [PATH:dol03410]
D      Dole_2166 DNA-(apurinic or apyrimidinic site) lyase	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D      Dole_1519 A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D      Dole_2514 DNA-3-methyladenine glycosylase I	K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D      Dole_2558 exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D      Dole_1880 apurinic endonuclease Apn1	K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D      Dole_2573 DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      Dole_2106 single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      Dole_1715 DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C    03420 Nucleotide excision repair [PATH:dol03420]
D      Dole_1705 transcription-repair coupling factor	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D      Dole_0632 excinuclease ABC, A subunit	K03701 uvrA; excinuclease ABC subunit A
D      Dole_2376 excinuclease ABC, B subunit	K03702 uvrB; excinuclease ABC subunit B
D      Dole_2375 excinuclease ABC, C subunit	K03703 uvrC; excinuclease ABC subunit C
D      Dole_2115 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      Dole_2919 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      Dole_2573 DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      Dole_1715 DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C    03430 Mismatch repair [PATH:dol03430]
D      Dole_1126 DNA mismatch repair protein MutS	K03555 mutS; DNA mismatch repair protein MutS
D      Dole_0149 DNA mismatch repair protein MutL	K03572 mutL; DNA mismatch repair protein MutL
D      Dole_2115 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      Dole_2919 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      Dole_1665 exodeoxyribonuclease VII, large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D      Dole_1664 exodeoxyribonuclease VII, small subunit	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D      Dole_2106 single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      Dole_0044 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_2923 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_1885 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      Dole_0261 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      Dole_0094 DNA polymerase III, beta subunit	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D      Dole_0542 DNA polymerase III, subunits gamma and tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D      Dole_1188 DNA polymerase III delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D      Dole_3206 DNA polymerase III, delta prime subunit	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D      Dole_1715 DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D      Dole_0821 DNA adenine methylase	K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C    03440 Homologous recombination [PATH:dol03440]
D      Dole_2106 single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      Dole_0044 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_2923 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_1709 DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O)
D      Dole_0540 recombination protein RecR	K06187 recR; recombination protein RecR
D      Dole_1267 recA protein	K03553 recA; recombination protein RecA
D      Dole_2573 DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      Dole_2206 DNA recombination protein RuvA domain I	K03550 ruvA; holliday junction DNA helicase RuvA
D      Dole_2205 Holliday junction DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D      Dole_2207 Crossover junction endodeoxyribonuclease	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D      Dole_0250 putative transcriptional regulator	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D      Dole_1055 exodeoxyribonuclease V, beta subunit	K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D      Dole_1054 exodeoxyribonuclease V, gamma subunit	K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D      Dole_1056 exodeoxyribonuclease V, alpha subunit	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D      Dole_2348 helicase, RecD/TraA family	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D      Dole_2673 helicase, RecD/TraA family	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D      Dole_1885 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      Dole_0261 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      Dole_0094 DNA polymerase III, beta subunit	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D      Dole_0542 DNA polymerase III, subunits gamma and tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D      Dole_1188 DNA polymerase III delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D      Dole_3206 DNA polymerase III, delta prime subunit	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D      Dole_0025 primosomal protein N'	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C    03450 Non-homologous end-joining
C    03460 Fanconi anemia pathway
B
B  09126 Chromosome
C    03082 ATP-dependent chromatin remodeling
C    03083 Polycomb repressive complex
D      Dole_1087 Tetratricopeptide TPR_2 repeat protein	K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
B
B  09125 Information processing in viruses
C    03230 Viral genome structure
C    03240 Viral replication
C    03250 Viral life cycle - HIV-1
C    03260 Virion - Human immunodeficiency virus
C    03271 Virion - Rotavirus
C    03262 Virion - Coronavirus
C    03261 Virion - Influenza virus
C    03263 Virion - Enterovirus
C    03264 Virion - Flavivirus
C    03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C    03266 Virion - Herpesvirus
C    03268 Virion - Orthopoxvirus
C    03267 Virion - Adenovirus
C    03259 Virion - Bacteriophages T4 and T7
C    03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B  09131 Membrane transport
C    02010 ABC transporters [PATH:dol02010]
D      Dole_2631 ABC transporter, periplasmic substrate-binding protein	K05772 tupA; tungstate transport system substrate-binding protein
D      Dole_2630 binding-protein-dependent transport systems inner membrane component	K05773 tupB; tungstate transport system permease protein
D      Dole_2629 ABC transporter-related protein	K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D      Dole_2634 extracellular solute-binding protein family 1	K15495 wtpA; molybdate/tungstate transport system substrate-binding protein
D      Dole_2633 binding-protein-dependent transport systems inner membrane component	K15496 wtpB; molybdate/tungstate transport system permease protein
D      Dole_2632 ABC transporter-related protein	K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6]
D      Dole_0212 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein	K15553 ssuA; sulfonate transport system substrate-binding protein
D      Dole_0213 binding-protein-dependent transport systems inner membrane component	K15554 ssuC; sulfonate transport system permease protein
D      Dole_0208 molybdenum ABC transporter, periplasmic molybdate-binding protein	K02020 modA; molybdate transport system substrate-binding protein
D      Dole_0209 binding-protein-dependent transport systems inner membrane component	K02018 modB; molybdate transport system permease protein
D      Dole_0210 ABC transporter-related protein	K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D      Dole_0214 ABC transporter-related protein	K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D      Dole_2763 Substrate-binding region of ABC-type glycine betaine transport system	K02002 proX; glycine betaine/proline transport system substrate-binding protein
D      Dole_2764 binding-protein-dependent transport systems inner membrane component	K02001 proW; glycine betaine/proline transport system permease protein
D      Dole_2765 glycine betaine/L-proline ABC transporter, ATPase subunit	K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D      Dole_2279 toluene tolerance family protein	K07323 mlaC; phospholipid transport system substrate-binding protein
D      Dole_1015 Mammalian cell entry related domain protein	K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D      Dole_0031 Mammalian cell entry related domain protein	K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D      Dole_0033 protein of unknown function DUF140	K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D      Dole_1017 protein of unknown function DUF140	K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D      Dole_1016 ABC transporter-related protein	K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D      Dole_1925 phosphate binding protein	K02040 pstS; phosphate transport system substrate-binding protein
D      Dole_1926 phosphate ABC transporter, inner membrane subunit PstC	K02037 pstC; phosphate transport system permease protein
D      Dole_1927 phosphate ABC transporter, inner membrane subunit PstA	K02038 pstA; phosphate transport system permease protein
D      Dole_1928 phosphate ABC transporter, ATPase subunit	K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D      Dole_0833 Extracellular ligand-binding receptor	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      Dole_3009 extracellular ligand-binding receptor	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      Dole_0834 inner-membrane translocator	K01997 livH; branched-chain amino acid transport system permease protein
D      Dole_3010 inner-membrane translocator	K01997 livH; branched-chain amino acid transport system permease protein
D      Dole_3011 inner-membrane translocator	K01998 livM; branched-chain amino acid transport system permease protein
D      Dole_0835 inner-membrane translocator	K01998 livM; branched-chain amino acid transport system permease protein
D      Dole_0836 ABC transporter-related protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      Dole_3008 ABC transporter-related protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      Dole_0837 ABC transporter-related protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      Dole_3007 ABC transporter-related protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      Dole_0942 extracellular solute-binding protein family 5	K13893 yejA; microcin C transport system substrate-binding protein
D      Dole_0944 binding-protein-dependent transport systems inner membrane component	K13894 yejB; microcin C transport system permease protein
D      Dole_0943 binding-protein-dependent transport systems inner membrane component	K13895 yejE; microcin C transport system permease protein
D      Dole_0400 periplasmic solute binding protein	K09815 znuA; zinc transport system substrate-binding protein
D      Dole_0402 ABC-3 protein	K09816 znuB; zinc transport system permease protein
D      Dole_0401 ABC transporter-related protein	K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D      Dole_2022 cobalamin (vitamin B12) biosynthesis CbiM protein	K02007 cbiM; cobalt/nickel transport system permease protein
D      Dole_2020 cobalt ABC transporter, inner membrane subunit CbiQ	K02008 cbiQ; cobalt/nickel transport system permease protein
D      Dole_2019 ABC transporter-related protein	K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D      Dole_2023 conserved hypothetical protein	K10094 cbiK; nickel transport protein
D      Dole_2021 conserved hypothetical protein	K16915 cbiL; nickel transport protein
D      Dole_1284 ABC-2 type transporter	K09690 wzm; homopolymeric O-antigen transport system permease protein
D      Dole_1285 ABC transporter-related protein	K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D      Dole_2846 lipoprotein releasing system, transmembrane protein, LolC/E family	K09808 lolC_E; lipoprotein-releasing system permease protein
D      Dole_2845 ABC transporter-related protein	K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D      Dole_1431 permease YjgP/YjgQ family protein	K07091 lptF; lipopolysaccharide export system permease protein
D      Dole_1432 permease YjgP/YjgQ family protein	K11720 lptG; lipopolysaccharide export system permease protein
D      Dole_0507 ABC transporter-related protein	K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D      Dole_2451 protein of unknown function DUF214	K09811 ftsX; cell division transport system permease protein
D      Dole_2450 cell division ATP-binding protein FtsE	K09812 ftsE; cell division transport system ATP-binding protein
D      Dole_2836 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA	K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D      Dole_3226 ABC transporter-related protein	K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D      Dole_3227 ABC transporter-related protein	K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D      Dole_1627 ABC transporter-related protein	K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C    02060 Phosphotransferase system (PTS) [PATH:dol02060]
D      Dole_2698 phosphoenolpyruvate-protein phosphotransferase	K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D      Dole_2699 Phosphotransferase system, phosphocarrier protein HPr	K02784 ptsH; phosphocarrier protein HPr
D      Dole_0502 PTS system fructose subfamily IIA component	K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D      Dole_0504 putative PTS IIA-like nitrogen-regulatory protein PtsN	K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D      Dole_2109 putative PTS IIA-like nitrogen-regulatory protein PtsN	K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C    03070 Bacterial secretion system [PATH:dol03070]
D      Dole_0611 type I secretion outer membrane protein, TolC family	K12340 tolC; outer membrane protein
D      Dole_1217 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_1629 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_1041 general secretion pathway protein D	K02453 gspD; general secretion pathway protein D
D      Dole_1040 PDZ/DHR/GLGF domain protein	K02452 gspC; general secretion pathway protein C
D      Dole_1045 general secretion pathway protein F	K02455 gspF; general secretion pathway protein F
D      Dole_1032 general secretion pathway protein G	K02456 gspG; general secretion pathway protein G
D      Dole_1034 hypothetical protein	K02458 gspI; general secretion pathway protein I
D      Dole_1035 hypothetical protein	K02459 gspJ; general secretion pathway protein J
D      Dole_1036 Type II secretory pathway component PulK-like protein	K02460 gspK; general secretion pathway protein K
D      Dole_1037 Fimbrial assembly family protein	K02461 gspL; general secretion pathway protein L
D      Dole_1038 hypothetical protein	K02462 gspM; general secretion pathway protein M
D      Dole_0536 type II secretion system protein E	K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D      Dole_1042 general secretory pathway protein E	K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D      Dole_2442 protein-export membrane protein SecD	K03072 secD; preprotein translocase subunit SecD
D      Dole_2443 protein-export membrane protein SecF	K03074 secF; preprotein translocase subunit SecF
D      Dole_0696 preprotein translocase, SecE subunit	K03073 secE; preprotein translocase subunit SecE
D      Dole_0498 preprotein translocase, SecG subunit	K03075 secG; preprotein translocase subunit SecG
D      Dole_0728 preprotein translocase, SecY subunit	K03076 secY; preprotein translocase subunit SecY
D      Dole_2441 preprotein translocase, YajC subunit	K03210 yajC; preprotein translocase subunit YajC
D      Dole_0102 60 kDa inner membrane insertion protein	K03217 yidC; YidC/Oxa1 family membrane protein insertase
D      Dole_0620 SecA DEAD domain protein	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      Dole_2483 preprotein translocase, SecA subunit	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      Dole_1718 signal recognition particle-docking protein FtsY	K03110 ftsY; fused signal recognition particle receptor
D      Dole_2310 signal recognition particle protein	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D      Dole_0188 twin-arginine translocation protein, TatA/E family subunit	K03116 tatA; sec-independent protein translocase protein TatA
D      Dole_0045 twin-arginine translocation protein, TatA/E family subunit	K03116 tatA; sec-independent protein translocase protein TatA
D      Dole_3172 twin-arginine translocation protein, TatA/E family subunit	K03117 tatB; sec-independent protein translocase protein TatB
D      Dole_3171 Sec-independent protein translocase, TatC subunit	K03118 tatC; sec-independent protein translocase protein TatC
B
B  09132 Signal transduction
C    02020 Two-component system [PATH:dol02020]
D      Dole_1931 PAS/PAC sensor signal transduction histidine kinase	K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D      Dole_1930 two component transcriptional regulator, winged helix family	K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D      Dole_1149 response regulator receiver protein	K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D      Dole_0622 two component transcriptional regulator, winged helix family	K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D      Dole_2810 response regulator receiver protein	K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D      Dole_1925 phosphate binding protein	K02040 pstS; phosphate transport system substrate-binding protein
D      Dole_0223 response regulator receiver protein	K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D      Dole_2815 protease Do	K04771 degP; serine protease Do [EC:3.4.21.107]
D      Dole_2300 protein of unknown function DUF112 transmembrane	K07793 tctA; putative tricarboxylic transport membrane protein
D      Dole_2301 conserved hypothetical protein	K07795 tctC; putative tricarboxylic transport membrane protein
D      Dole_0001 chromosomal replication initiator protein DnaA	K02313 dnaA; chromosomal replication initiator protein
D      Dole_0567 UTP-GlnB uridylyltransferase, GlnD	K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D      Dole_0564 nitrogen regulatory protein P-II	K04751 glnB; nitrogen regulatory protein P-II 1
D      Dole_0552 nitrogen regulatory protein P-II	K04751 glnB; nitrogen regulatory protein P-II 1
D      Dole_2273 glutamine synthetase, type I	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_2272 glutamine synthetase catalytic region	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_2738 PAS/PAC sensor signal transduction histidine kinase	K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D      Dole_2739 putative two component, sigma54 specific, transcriptional regulator, Fis family	K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D      Dole_1785 transcriptional regulator, NifA subfamily, Fis Family	K02584 nifA; Nif-specific regulatory protein
D      Dole_0426 signal transduction histidine kinase, nitrogen specific, NtrB	K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D      Dole_2808 PAS/PAC sensor signal transduction histidine kinase	K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D      Dole_0427 two component, sigma54 specific, transcriptional regulator, Fis family	K07713 zraR; two-component system, NtrC family, response regulator HydG
D      Dole_2807 two component, sigma54 specific, transcriptional regulator, Fis family	K07713 zraR; two-component system, NtrC family, response regulator HydG
D      Dole_3068 PAS modulated sigma54 specific transcriptional regulator, Fis family	K07713 zraR; two-component system, NtrC family, response regulator HydG
D      Dole_0927 hypothetical protein	K07803 zraP; zinc resistance-associated protein
D      Dole_0425 zinc-resistance associated protein	K07803 zraP; zinc resistance-associated protein
D      Dole_0429 zinc-resistance associated protein	K07803 zraP; zinc resistance-associated protein
D      Dole_1777 two component, sigma54 specific, transcriptional regulator, Fis family	K07714 atoC; two-component system, NtrC family, response regulator AtoC
D      Dole_2401 two component, sigma54 specific, transcriptional regulator, Fis family	K07714 atoC; two-component system, NtrC family, response regulator AtoC
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0516 two component, sigma54 specific, transcriptional regulator, Fis family	K02667 pilR; two-component system, NtrC family, response regulator PilR
D      Dole_0506 RNA polymerase, sigma 54 subunit, RpoN	K03092 rpoN; RNA polymerase sigma-54 factor
D      Dole_0517 tfp pilus assembly protein, major pilin	K02650 pilA; type IV pilus assembly protein PilA
D      Dole_0875 MCP methyltransferase, CheR-type	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      Dole_0987 MCP methyltransferase, CheR-type	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      Dole_2313 transcriptional regulator, Fis family	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      Dole_0205 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_0648 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_0872 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_1751 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_2000 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_0874 CheW protein	K03408 cheW; purine-binding chemotaxis protein CheW
D      Dole_0989 CheW protein	K03408 cheW; purine-binding chemotaxis protein CheW
D      Dole_0871 CheA signal transduction histidine kinase	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      Dole_0990 CheA signal transduction histidine kinase	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      Dole_0876 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_0880 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_1059 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_0878 response regulator receiver modulated CheB methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      Dole_0988 response regulator receiver modulated CheB methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      Dole_3271 response regulator receiver protein	K11443 divK; two-component system, cell cycle response regulator DivK
D      Dole_3256 PAS/PAC sensor hybrid histidine kinase	K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D      Dole_2700 PAS/PAC sensor hybrid histidine kinase	K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D      Dole_3076 Tripartite ATP-independent periplasmic transporter DctQ component	K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D      Dole_3075 TRAP dicarboxylate transporter, DctM subunit	K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D      Dole_3155 TRAP dicarboxylate transporter, DctM subunit	K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D      Dole_0067 cyclic nucleotide-binding protein	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D      Dole_2760 cyclic nucleotide-binding protein	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D      Dole_2199 cyclic nucleotide-binding protein	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D      Dole_2649 cytochrome bd ubiquinol oxidase subunit I	K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D      Dole_2650 cytochrome d ubiquinol oxidase, subunit II	K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D      Dole_0611 type I secretion outer membrane protein, TolC family	K12340 tolC; outer membrane protein
D      Dole_1217 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_1629 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_1658 polysaccharide export protein	K01991 wza; polysaccharide biosynthesis/export protein
D      Dole_0139 Hpt protein	K20976 hptB; histidine phosphotransfer protein HptB
C    04010 MAPK signaling pathway
C    04013 MAPK signaling pathway - fly
C    04016 MAPK signaling pathway - plant
C    04011 MAPK signaling pathway - yeast
C    04012 ErbB signaling pathway
C    04014 Ras signaling pathway
C    04015 Rap1 signaling pathway
C    04310 Wnt signaling pathway
C    04330 Notch signaling pathway
C    04340 Hedgehog signaling pathway
C    04341 Hedgehog signaling pathway - fly
C    04350 TGF-beta signaling pathway
C    04390 Hippo signaling pathway
C    04391 Hippo signaling pathway - fly
C    04392 Hippo signaling pathway - multiple species
C    04370 VEGF signaling pathway
C    04371 Apelin signaling pathway
C    04630 JAK-STAT signaling pathway
C    04064 NF-kappa B signaling pathway
C    04668 TNF signaling pathway
C    04066 HIF-1 signaling pathway
C    04068 FoxO signaling pathway
C    04020 Calcium signaling pathway
C    04070 Phosphatidylinositol signaling system
C    04072 Phospholipase D signaling pathway
C    04071 Sphingolipid signaling pathway
C    04024 cAMP signaling pathway
C    04022 cGMP-PKG signaling pathway
C    04151 PI3K-Akt signaling pathway
C    04152 AMPK signaling pathway
C    04150 mTOR signaling pathway
C    04075 Plant hormone signal transduction
B
B  09133 Signaling molecules and interaction
C    04080 Neuroactive ligand-receptor interaction
C    04060 Cytokine-cytokine receptor interaction
C    04061 Viral protein interaction with cytokine and cytokine receptor
C    04512 ECM-receptor interaction
C    04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B  09141 Transport and catabolism
C    04144 Endocytosis
C    04145 Phagosome
C    04142 Lysosome
C    04146 Peroxisome
C    04140 Autophagy - animal
C    04138 Autophagy - yeast
C    04136 Autophagy - other
C    04137 Mitophagy - animal
C    04139 Mitophagy - yeast
C    04148 Efferocytosis
B
B  09143 Cell growth and death
C    04110 Cell cycle
C    04111 Cell cycle - yeast
C    04112 Cell cycle - Caulobacter
C    04113 Meiosis - yeast
C    04114 Oocyte meiosis
C    04210 Apoptosis
C    04214 Apoptosis - fly
C    04215 Apoptosis - multiple species
C    04216 Ferroptosis
C    04217 Necroptosis
C    04115 p53 signaling pathway
C    04218 Cellular senescence
B
B  09144 Cellular community - eukaryotes
C    04510 Focal adhesion
C    04520 Adherens junction
C    04530 Tight junction
C    04540 Gap junction
C    04550 Signaling pathways regulating pluripotency of stem cells
B
B  09145 Cellular community - prokaryotes
C    02024 Quorum sensing [PATH:dol02024]
D      Dole_1569 Anthranilate synthase	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      Dole_1568 glutamine amidotransferase of anthranilate synthase	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D      Dole_1494 beta-lactamase domain protein	K20257 pqsE; 2-aminobenzoylacetyl-CoA thioesterase [EC:3.1.2.32]
D      Dole_0831 Pyridoxal-dependent decarboxylase	K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D      Dole_1897 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase	K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D      Dole_0833 Extracellular ligand-binding receptor	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      Dole_3009 extracellular ligand-binding receptor	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      Dole_0834 inner-membrane translocator	K01997 livH; branched-chain amino acid transport system permease protein
D      Dole_3010 inner-membrane translocator	K01997 livH; branched-chain amino acid transport system permease protein
D      Dole_3011 inner-membrane translocator	K01998 livM; branched-chain amino acid transport system permease protein
D      Dole_0835 inner-membrane translocator	K01998 livM; branched-chain amino acid transport system permease protein
D      Dole_0836 ABC transporter-related protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      Dole_3008 ABC transporter-related protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      Dole_0837 ABC transporter-related protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      Dole_3007 ABC transporter-related protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      Dole_3006 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0337 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0314 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0164 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_1204 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0225 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0067 cyclic nucleotide-binding protein	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D      Dole_2760 cyclic nucleotide-binding protein	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D      Dole_2199 cyclic nucleotide-binding protein	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D      Dole_2079 riboflavin biosynthesis protein RibD	K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D      Dole_2896 RND efflux system, outer membrane lipoprotein, NodT family	K18139 oprM; outer membrane protein, multidrug efflux system
D      Dole_0941 oligopeptide/dipeptide ABC transporter, ATPase subunit	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      Dole_0940 oligopeptide/dipeptide ABC transporter, ATPase subunit	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      Dole_0102 60 kDa inner membrane insertion protein	K03217 yidC; YidC/Oxa1 family membrane protein insertase
D      Dole_0696 preprotein translocase, SecE subunit	K03073 secE; preprotein translocase subunit SecE
D      Dole_0498 preprotein translocase, SecG subunit	K03075 secG; preprotein translocase subunit SecG
D      Dole_0728 preprotein translocase, SecY subunit	K03076 secY; preprotein translocase subunit SecY
D      Dole_2441 preprotein translocase, YajC subunit	K03210 yajC; preprotein translocase subunit YajC
D      Dole_0620 SecA DEAD domain protein	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      Dole_2483 preprotein translocase, SecA subunit	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      Dole_1718 signal recognition particle-docking protein FtsY	K03110 ftsY; fused signal recognition particle receptor
D      Dole_2310 signal recognition particle protein	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C    05111 Biofilm formation - Vibrio cholerae
C    02025 Biofilm formation - Pseudomonas aeruginosa
C    02026 Biofilm formation - Escherichia coli
B
B  09142 Cell motility
C    02030 Bacterial chemotaxis [PATH:dol02030]
D      Dole_0205 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_0648 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_0872 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_1751 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_2000 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_0871 CheA signal transduction histidine kinase	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      Dole_0990 CheA signal transduction histidine kinase	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      Dole_0874 CheW protein	K03408 cheW; purine-binding chemotaxis protein CheW
D      Dole_0989 CheW protein	K03408 cheW; purine-binding chemotaxis protein CheW
D      Dole_0876 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_0880 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_1059 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_1058 CheC, inhibitor of MCP methylation	K03410 cheC; chemotaxis protein CheC
D      Dole_0878 response regulator receiver modulated CheB methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      Dole_0988 response regulator receiver modulated CheB methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      Dole_0877 CheD	K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D      Dole_0875 MCP methyltransferase, CheR-type	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      Dole_0987 MCP methyltransferase, CheR-type	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      Dole_2313 transcriptional regulator, Fis family	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
C    02040 Flagellar assembly [PATH:dol02040]
D      Dole_2151 RNA polymerase, sigma 70 subunit, RpoD family	K03086 rpoD; RNA polymerase primary sigma factor
D      Dole_0506 RNA polymerase, sigma 54 subunit, RpoN	K03092 rpoN; RNA polymerase sigma-54 factor
C    04814 Motor proteins
C    04820 Cytoskeleton in muscle cells
D      Dole_0339 Phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C    04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B  09151 Immune system
C    04640 Hematopoietic cell lineage
C    04610 Complement and coagulation cascades
C    04611 Platelet activation
C    04613 Neutrophil extracellular trap formation
C    04620 Toll-like receptor signaling pathway
C    04624 Toll and Imd signaling pathway
C    04621 NOD-like receptor signaling pathway
C    04622 RIG-I-like receptor signaling pathway
C    04623 Cytosolic DNA-sensing pathway
C    04625 C-type lectin receptor signaling pathway
C    04650 Natural killer cell mediated cytotoxicity
C    04612 Antigen processing and presentation
C    04660 T cell receptor signaling pathway
C    04658 Th1 and Th2 cell differentiation
C    04659 Th17 cell differentiation
C    04657 IL-17 signaling pathway
C    04662 B cell receptor signaling pathway
C    04664 Fc epsilon RI signaling pathway
C    04666 Fc gamma R-mediated phagocytosis
C    04670 Leukocyte transendothelial migration
C    04672 Intestinal immune network for IgA production
C    04062 Chemokine signaling pathway
B
B  09152 Endocrine system
C    04911 Insulin secretion
C    04910 Insulin signaling pathway
C    04922 Glucagon signaling pathway
C    04923 Regulation of lipolysis in adipocytes
C    04920 Adipocytokine signaling pathway
C    03320 PPAR signaling pathway
C    04929 GnRH secretion
C    04912 GnRH signaling pathway
C    04913 Ovarian steroidogenesis
C    04915 Estrogen signaling pathway
C    04914 Progesterone-mediated oocyte maturation
C    04917 Prolactin signaling pathway
C    04921 Oxytocin signaling pathway
C    04926 Relaxin signaling pathway
C    04935 Growth hormone synthesis, secretion and action
C    04918 Thyroid hormone synthesis
C    04919 Thyroid hormone signaling pathway
C    04928 Parathyroid hormone synthesis, secretion and action
C    04916 Melanogenesis
C    04924 Renin secretion
C    04614 Renin-angiotensin system
C    04925 Aldosterone synthesis and secretion
C    04927 Cortisol synthesis and secretion
B
B  09153 Circulatory system
C    04260 Cardiac muscle contraction
C    04261 Adrenergic signaling in cardiomyocytes
C    04270 Vascular smooth muscle contraction
B
B  09154 Digestive system
C    04970 Salivary secretion
C    04971 Gastric acid secretion
C    04972 Pancreatic secretion
C    04976 Bile secretion
C    04973 Carbohydrate digestion and absorption
C    04974 Protein digestion and absorption
C    04975 Fat digestion and absorption
C    04979 Cholesterol metabolism
C    04977 Vitamin digestion and absorption
C    04980 Cobalamin transport and metabolism [PATH:dol04980]
D      Dole_0078 LAO/AO transport system ATPase	K07588 MMAA; GTPase [EC:3.6.5.-]
D      Dole_0079 methylmalonyl-CoA mutase, large subunit	K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
C    04978 Mineral absorption
B
B  09155 Excretory system
C    04962 Vasopressin-regulated water reabsorption
C    04960 Aldosterone-regulated sodium reabsorption
C    04961 Endocrine and other factor-regulated calcium reabsorption
C    04964 Proximal tubule bicarbonate reclamation
C    04966 Collecting duct acid secretion
B
B  09156 Nervous system
C    04724 Glutamatergic synapse
C    04727 GABAergic synapse
C    04725 Cholinergic synapse
C    04728 Dopaminergic synapse
C    04726 Serotonergic synapse
C    04720 Long-term potentiation
C    04730 Long-term depression
C    04723 Retrograde endocannabinoid signaling
C    04721 Synaptic vesicle cycle
C    04722 Neurotrophin signaling pathway
B
B  09157 Sensory system
C    04744 Phototransduction
C    04745 Phototransduction - fly
C    04740 Olfactory transduction
C    04742 Taste transduction
C    04750 Inflammatory mediator regulation of TRP channels
B
B  09158 Development and regeneration
C    04320 Dorso-ventral axis formation
C    04360 Axon guidance
C    04361 Axon regeneration
C    04380 Osteoclast differentiation
B
B  09149 Aging
C    04211 Longevity regulating pathway
C    04212 Longevity regulating pathway - worm
C    04213 Longevity regulating pathway - multiple species
B
B  09159 Environmental adaptation
C    04710 Circadian rhythm
C    04713 Circadian entrainment
C    04711 Circadian rhythm - fly
C    04712 Circadian rhythm - plant
C    04714 Thermogenesis
C    04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B  09161 Cancer: overview
C    05200 Pathways in cancer
C    05202 Transcriptional misregulation in cancer
C    05206 MicroRNAs in cancer
C    05205 Proteoglycans in cancer
C    05204 Chemical carcinogenesis - DNA adducts
C    05207 Chemical carcinogenesis - receptor activation
C    05208 Chemical carcinogenesis - reactive oxygen species
C    05203 Viral carcinogenesis
C    05230 Central carbon metabolism in cancer
C    05231 Choline metabolism in cancer
C    05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B  09162 Cancer: specific types
C    05210 Colorectal cancer
C    05212 Pancreatic cancer
C    05225 Hepatocellular carcinoma
C    05226 Gastric cancer
C    05214 Glioma
C    05216 Thyroid cancer
C    05221 Acute myeloid leukemia
C    05220 Chronic myeloid leukemia
C    05217 Basal cell carcinoma
C    05218 Melanoma
C    05211 Renal cell carcinoma
C    05219 Bladder cancer
C    05215 Prostate cancer
C    05213 Endometrial cancer
C    05224 Breast cancer
C    05222 Small cell lung cancer
C    05223 Non-small cell lung cancer
B
B  09172 Infectious disease: viral
C    05166 Human T-cell leukemia virus 1 infection
C    05170 Human immunodeficiency virus 1 infection
C    05161 Hepatitis B
C    05160 Hepatitis C
C    05171 Coronavirus disease - COVID-19
C    05164 Influenza A
C    05162 Measles
C    05168 Herpes simplex virus 1 infection
C    05163 Human cytomegalovirus infection
C    05167 Kaposi sarcoma-associated herpesvirus infection
C    05169 Epstein-Barr virus infection
C    05165 Human papillomavirus infection
B
B  09171 Infectious disease: bacterial
C    05110 Vibrio cholerae infection
C    05120 Epithelial cell signaling in Helicobacter pylori infection
C    05130 Pathogenic Escherichia coli infection
C    05132 Salmonella infection
C    05131 Shigellosis
C    05135 Yersinia infection
C    05133 Pertussis
C    05134 Legionellosis
C    05150 Staphylococcus aureus infection
C    05152 Tuberculosis
C    05100 Bacterial invasion of epithelial cells
B
B  09174 Infectious disease: parasitic
C    05146 Amoebiasis
C    05144 Malaria
C    05145 Toxoplasmosis
C    05140 Leishmaniasis
C    05142 Chagas disease
C    05143 African trypanosomiasis
B
B  09163 Immune disease
C    05310 Asthma
C    05322 Systemic lupus erythematosus
C    05323 Rheumatoid arthritis
C    05320 Autoimmune thyroid disease
C    05321 Inflammatory bowel disease
C    05330 Allograft rejection
C    05332 Graft-versus-host disease
C    05340 Primary immunodeficiency
B
B  09164 Neurodegenerative disease
C    05010 Alzheimer disease
C    05012 Parkinson disease
C    05014 Amyotrophic lateral sclerosis
C    05016 Huntington disease
C    05017 Spinocerebellar ataxia
C    05020 Prion disease
C    05022 Pathways of neurodegeneration - multiple diseases
B
B  09165 Substance dependence
C    05030 Cocaine addiction
C    05031 Amphetamine addiction
C    05032 Morphine addiction
C    05033 Nicotine addiction
C    05034 Alcoholism
B
B  09166 Cardiovascular disease
C    05417 Lipid and atherosclerosis
C    05418 Fluid shear stress and atherosclerosis
C    05410 Hypertrophic cardiomyopathy
C    05412 Arrhythmogenic right ventricular cardiomyopathy
C    05414 Dilated cardiomyopathy
C    05415 Diabetic cardiomyopathy
C    05416 Viral myocarditis
B
B  09167 Endocrine and metabolic disease
C    04930 Type II diabetes mellitus
C    04940 Type I diabetes mellitus
C    04950 Maturity onset diabetes of the young
C    04936 Alcoholic liver disease
C    04932 Non-alcoholic fatty liver disease
C    04931 Insulin resistance
C    04933 AGE-RAGE signaling pathway in diabetic complications
C    04934 Cushing syndrome
B
B  09175 Drug resistance: antimicrobial
C    01501 beta-Lactam resistance [PATH:dol01501]
D      Dole_0377 major facilitator superfamily MFS_1	K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D      Dole_0295 Beta-N-acetylhexosaminidase	K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D      Dole_2894 efflux transporter, RND family, MFP subunit	K03585 acrA; membrane fusion protein, multidrug efflux system
D      Dole_0621 secretion protein HlyD	K03585 acrA; membrane fusion protein, multidrug efflux system
D      Dole_2895 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family	K18138 acrB; multidrug efflux pump
D      Dole_2896 RND efflux system, outer membrane lipoprotein, NodT family	K18139 oprM; outer membrane protein, multidrug efflux system
D      Dole_0611 type I secretion outer membrane protein, TolC family	K12340 tolC; outer membrane protein
D      Dole_1217 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_1629 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_2534 penicillin-binding protein, 1A family	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      Dole_0135 penicillin-binding protein, 1A family	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      Dole_0595 Peptidoglycan glycosyltransferase	K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D      Dole_2793 Peptidoglycan glycosyltransferase	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C    01502 Vancomycin resistance [PATH:dol01502]
D      Dole_1426 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_2749 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_1891 GCN5-related N-acetyltransferase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_0057 alanine racemase	K01775 alr; alanine racemase [EC:5.1.1.1]
D      Dole_2791 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase	K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D      Dole_2790 phospho-N-acetylmuramoyl-pentapeptide-transferase	K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D      Dole_2787 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C    01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:dol01503]
D      Dole_1127 N-acetylmuramoyl-L-alanine amidase	K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D      Dole_2691 cell wall hydrolase/autolysin	K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D      Dole_2815 protease Do	K04771 degP; serine protease Do [EC:3.4.21.107]
D      Dole_2894 efflux transporter, RND family, MFP subunit	K03585 acrA; membrane fusion protein, multidrug efflux system
D      Dole_0621 secretion protein HlyD	K03585 acrA; membrane fusion protein, multidrug efflux system
D      Dole_2895 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family	K18138 acrB; multidrug efflux pump
D      Dole_0611 type I secretion outer membrane protein, TolC family	K12340 tolC; outer membrane protein
D      Dole_1217 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_1629 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_2840 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase	K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B  09176 Drug resistance: antineoplastic
C    01521 EGFR tyrosine kinase inhibitor resistance
C    01524 Platinum drug resistance
C    01523 Antifolate resistance
C    01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B  09181 Protein families: metabolism
C    01000 Enzymes [BR:dol01000]
C    01001 Protein kinases [BR:dol01001]
D      Dole_1367 serine/threonine protein kinase with Chase2 sensor	K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D      Dole_0423 serine/threonine protein kinase	K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D      Dole_2230 PASTA domain containing protein	K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D      Dole_1578 serine/threonine protein kinase with TPR repeats	K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D      Dole_2506 serine/threonine protein kinase	K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D      Dole_2637 HipA domain protein	K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D      Dole_0896 HipA domain protein	K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D      Dole_0141 putative anti-sigma regulatory factor, serine/threonine protein kinase	K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D      Dole_1657 Non-specific protein-tyrosine kinase	K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D      Dole_1931 PAS/PAC sensor signal transduction histidine kinase	K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D      Dole_2738 PAS/PAC sensor signal transduction histidine kinase	K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D      Dole_0426 signal transduction histidine kinase, nitrogen specific, NtrB	K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D      Dole_2808 PAS/PAC sensor signal transduction histidine kinase	K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D      Dole_1356 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_1349 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_2334 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_0888 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_1650 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_1776 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_1344 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_1360 response regulator receiver sensor signal transduction histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_3258 PAS/PAC sensor signal transduction histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_2127 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_2392 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_0871 CheA signal transduction histidine kinase	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      Dole_0990 CheA signal transduction histidine kinase	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      Dole_3256 PAS/PAC sensor hybrid histidine kinase	K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D      Dole_2700 PAS/PAC sensor hybrid histidine kinase	K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D      Dole_1682 methyl-accepting chemotaxis sensory transducer	K20971 ladS; two-component system, sensor histidine kinase LadS
C    01009 Protein phosphatases and associated proteins [BR:dol01009]
D      Dole_0357 adenosylhomocysteinase	K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D      Dole_2111 Diphosphate--fructose-6-phosphate 1-phosphotransferase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D      Dole_2214 heat shock protein Hsp90	K04079 HSP90A; molecular chaperone HtpG
D      Dole_1366 protein serine/threonine phosphatase	K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C    01002 Peptidases and inhibitors [BR:dol01002]
D      Dole_1190 lipoprotein signal peptidase	K03101 lspA; signal peptidase II [EC:3.4.23.36]
D      Dole_1855 peptidase A24A domain protein	K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D      Dole_2362 hypothetical protein	K08566 pla; plasminogen activator [EC:3.4.23.48]
D      Dole_2680 ExsB family protein	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      Dole_0966 GMP synthase, large subunit	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      Dole_0122 amidophosphoribosyltransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D      Dole_2113 Amidophosphoribosyltransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D      Dole_2275 ferredoxin-dependent glutamate synthase	K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D      Dole_3201 Glutamine--fructose-6-phosphate transaminase (isomerizing)	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      Dole_1462 asparagine synthase (glutamine-hydrolyzing)	K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D      Dole_1107 asparagine synthase (glutamine-hydrolyzing)	K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D      Dole_0921 Abortive infection protein	K07052 K07052; CAAX protease family protein
D      Dole_0971 Abortive infection protein	K07052 K07052; CAAX protease family protein
D      Dole_2748 Abortive infection protein	K07052 K07052; CAAX protease family protein
D      Dole_2871 Peptidase M16C associated domain protein	K06972 PITRM1; presequence protease [EC:3.4.24.-]
D      Dole_1400 peptidase M16 domain protein	K07263 pqqL; zinc protease [EC:3.4.24.-]
D      Dole_2216 peptidase T-like protein	K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D      Dole_2197 methionine aminopeptidase, type I	K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D      Dole_1673 peptidase M24	K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D      Dole_2013 peptidase M29 aminopeptidase II	K19689 ampS; aminopeptidase [EC:3.4.11.-]
D      Dole_3044 ATP-dependent metalloprotease FtsH	K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D      Dole_0495 Ste24 endopeptidase	K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D      Dole_0481 putative membrane-associated zinc metalloprotease	K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D      Dole_0619 peptidase, M50 family	K16922 yydH; putative peptide zinc metalloprotease protein
D      Dole_0055 protein of unknown function DUF980	K09933 mtfA; MtfA peptidase
D      Dole_2815 protease Do	K04771 degP; serine protease Do [EC:3.4.21.107]
D      Dole_0591 beta-lactamase	K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
D      Dole_2225 peptidase S13 D-Ala-D-Ala carboxypeptidase C	K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D      Dole_2693 ATP-dependent Clp protease, proteolytic subunit ClpP	K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D      Dole_1856 ATP-dependent protease La	K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D      Dole_2695 ATP-dependent protease La	K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D      Dole_1099 ATP-dependent protease La	K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D      Dole_0234 transcriptional repressor, LexA family	K01356 lexA; repressor LexA [EC:3.4.21.88]
D      Dole_0513 signal peptidase I	K03100 lepB; signal peptidase I [EC:3.4.21.89]
D      Dole_0321 signal peptidase I	K03100 lepB; signal peptidase I [EC:3.4.21.89]
D      Dole_2453 carboxyl-terminal protease	K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D      Dole_1739 signal peptide peptidase SppA, 36K type	K04773 sppA; protease IV [EC:3.4.21.-]
D      Dole_1980 signal peptide peptidase SppA, 36K type	K04773 sppA; protease IV [EC:3.4.21.-]
D      Dole_1727 Rhomboid family protein	K07059 K07059; rhomboid family protein
D      Dole_0590 peptidase U61 LD-carboxypeptidase A	K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D      Dole_2496 20S proteasome A and B subunits	K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D      Dole_1030 peptidase U32	K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D      Dole_0991 peptidase U32	K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D      Dole_0546 HflC protein	K04087 hflC; modulator of FtsH protease HflC
D      Dole_0545 HflK protein	K04088 hflK; modulator of FtsH protease HflK
C    01003 Glycosyltransferases [BR:dol01003]
D      Dole_2467 glycosyl transferase family 2	K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D      Dole_3114 glycosyl transferase family 2	K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D      Dole_2405 glycosyl transferase family 2	K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D      Dole_2412 glycosyl transferase family 2	K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D      Dole_1087 Tetratricopeptide TPR_2 repeat protein	K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D      Dole_1411 Tetratricopeptide TPR_2 repeat protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_1542 Tetratricopeptide TPR_2 repeat protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_1451 TPR repeat-containing protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_1273 TPR repeat-containing protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_1274 Tetratricopeptide TPR_2 repeat protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_2470 Tetratricopeptide TPR_2 repeat protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_2471 Tetratricopeptide TPR_2 repeat protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_2626 TPR repeat-containing protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_2410 Tetratricopeptide TPR_2 repeat protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_2413 TPR repeat-containing protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_2414 TPR repeat-containing protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_2415 Tetratricopeptide TPR_2 repeat protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_2417 Tetratricopeptide TPR_2 repeat protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_2418 Tetratricopeptide TPR_2 repeat protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_2419 Tetratricopeptide TPR_2 repeat protein	K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-]
D      Dole_2388 hypothetical protein	K13669 pimE; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D      Dole_0848 Starch synthase catalytic domain protein	K00703 glgA; starch synthase [EC:2.4.1.21]
D      Dole_0908 penicillin-binding protein, 1A family	K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D      Dole_2534 penicillin-binding protein, 1A family	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      Dole_0135 penicillin-binding protein, 1A family	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      Dole_2387 hypothetical protein	K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D      Dole_2515 glycosyl transferase group 1	K22908 mggS; mannosylglucosylglycerate synthase [EC:2.4.1.-]
D      Dole_2594 glycosyl transferase group 1	K26815 manT; MMP alpha-(1->4)-mannosyltransferase [EC:2.4.1.393]
D      Dole_2860 glycosyl transferase family 2	K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
C    01005 Lipopolysaccharide biosynthesis proteins [BR:dol01005]
D      Dole_2840 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase	K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D      Dole_2837 lipid-A-disaccharide synthase	K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D      Dole_2736 UDP-3-0-acyl N-acetylglucosamine deacetylase	K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D      Dole_2842 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase	K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D      Dole_2839 protein of unknown function DUF1009	K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D      Dole_1445 lipid A biosynthesis acyltransferase	K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D      Dole_1762 Three-deoxy-D-manno-octulosonic-acid transferase domain protein	K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D      Dole_3203 DegT/DnrJ/EryC1/StrS aminotransferase	K19715 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase [EC:2.6.1.109]
D      Dole_3202 iron-containing alcohol dehydrogenase	K19714 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase [EC:1.1.3.48]
D      Dole_0511 2-dehydro-3-deoxyphosphooctonate aldolase	K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D      Dole_0968 3-deoxy-D-manno-octulosonate cytidylyltransferase	K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D      Dole_0510 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family	K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D      Dole_2110 KpsF/GutQ family protein	K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D      Dole_1436 O-antigen polymerase	K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D      Dole_2674 histidinol-phosphate phosphatase family protein	K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D      Dole_1293 Ribonuclease III	K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C    01011 Peptidoglycan biosynthesis and degradation proteins [BR:dol01011]
D      Dole_2551 UDP-N-acetylglucosamine 1-carboxyvinyltransferase	K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D      Dole_2785 UDP-N-acetylenolpyruvoylglucosamine reductase	K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D      Dole_2786 UDP-N-acetylmuramate--alanine ligase	K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D      Dole_2789 UDP-N-acetylmuramoylalanine--D-glutamate ligase	K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D      Dole_2792 UDP-N-acetylmuramyl-tripeptide synthetase	K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D      Dole_1426 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_2749 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_1891 GCN5-related N-acetyltransferase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      Dole_0057 alanine racemase	K01775 alr; alanine racemase [EC:5.1.1.1]
D      Dole_0538 glutamate racemase	K01776 murI; glutamate racemase [EC:5.1.1.3]
D      Dole_0590 peptidase U61 LD-carboxypeptidase A	K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D      Dole_2790 phospho-N-acetylmuramoyl-pentapeptide-transferase	K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D      Dole_2787 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D      Dole_1174 Bacitracin resistance protein BacA	K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D      Dole_2327 integral membrane protein MviN	K03980 murJ; putative peptidoglycan lipid II flippase
D      Dole_2534 penicillin-binding protein, 1A family	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      Dole_0135 penicillin-binding protein, 1A family	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      Dole_0908 penicillin-binding protein, 1A family	K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D      Dole_0595 Peptidoglycan glycosyltransferase	K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D      Dole_2793 Peptidoglycan glycosyltransferase	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D      Dole_2225 peptidase S13 D-Ala-D-Ala carboxypeptidase C	K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D      Dole_0591 beta-lactamase	K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
D      Dole_0389 membrane-bound lytic murein transglycosylase B-like protein	K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D      Dole_2185 Lytic transglycosylase catalytic	K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D      Dole_0694 Lytic transglycosylase catalytic	K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D      Dole_2596 extracellular solute-binding protein family 3	K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D      Dole_0625 aminodeoxychorismate lyase	K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D      Dole_2675 rare lipoprotein A	K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D      Dole_0035 SpoIID/LytB domain	K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D      Dole_1127 N-acetylmuramoyl-L-alanine amidase	K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D      Dole_2691 cell wall hydrolase/autolysin	K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C    01004 Lipid biosynthesis proteins [BR:dol01004]
D      Dole_1850 3-oxoacyl-(acyl-carrier-protein) synthase III	K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D      Dole_1608 short-chain dehydrogenase/reductase SDR	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      Dole_2084 3-oxoacyl-(acyl-carrier-protein) reductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      Dole_2622 short-chain dehydrogenase/reductase SDR	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      Dole_2841 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ	K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D      Dole_1973 AMP-dependent synthetase and ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_1975 acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      Dole_1499 AMP-dependent synthetase and ligase	K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D      Dole_1247 acetoacetyl-CoA synthase	K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D      Dole_1610 acetoacetyl-CoA synthase	K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D      Dole_0138 CoA-binding domain protein	K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D      Dole_0137 ATP-grasp domain protein	K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D      Dole_3063 CoA-binding domain protein	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      Dole_0162 CoA-binding domain protein	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      Dole_3006 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0337 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0314 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0164 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_1204 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0225 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_1672 AMP-dependent synthetase and ligase	K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D      Dole_3198 AMP-dependent synthetase and ligase	K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D      Dole_2118 AMP-dependent synthetase and ligase	K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D      Dole_1991 Glycerol-3-phosphate O-acyltransferase	K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D      Dole_0384 protein of unknown function DUF205	K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D      Dole_2499 1-acylglycerol-3-phosphate O-acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      Dole_0128 1-acylglycerol-3-phosphate O-acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      Dole_0983 1-acyl-sn-glycerol-3-phosphate acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      Dole_1881 1-acylglycerol-3-phosphate O-acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C    01008 Polyketide biosynthesis proteins [BR:dol01008]
D      Dole_1675 PfaD family protein	K15329 pksE; trans-AT polyketide synthase, acyltransferase and oxidoreductase domains
C    01006 Prenyltransferases [BR:dol01006]
D      Dole_1663 Polyprenyl synthetase	K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D      Dole_3230 Polyprenyl synthetase	K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D      Dole_0478 undecaprenyl diphosphate synthase	K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D      Dole_1764 tRNA delta(2)-isopentenylpyrophosphate transferase	K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D      Dole_3210 4-hydroxybenzoate polyprenyltransferase, putative	K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C    01007 Amino acid related enzymes [BR:dol01007]
D      Dole_2533 glutamyl-tRNA synthetase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      Dole_1595 glutaminyl-tRNA synthetase	K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D      Dole_0609 tyrosyl-tRNA synthetase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      Dole_2757 tryptophanyl-tRNA synthetase	K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D      Dole_1166 cysteine synthase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      Dole_1667 cysteinyl-tRNA synthetase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      Dole_3215 arginyl-tRNA synthetase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      Dole_3204 methionyl-tRNA synthetase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D      Dole_1191 isoleucyl-tRNA synthetase	K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D      Dole_1729 valyl-tRNA synthetase	K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D      Dole_2438 leucyl-tRNA synthetase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      Dole_2847 lysyl-tRNA synthetase	K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D      Dole_0670 aspartyl-tRNA synthetase	K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D      Dole_0096 asparaginyl-tRNA synthetase	K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D      Dole_0669 histidyl-tRNA synthetase	K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D      Dole_1711 glycyl-tRNA synthetase, alpha subunit	K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D      Dole_1712 glycyl-tRNA synthetase, beta subunit	K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D      Dole_2745 seryl-tRNA synthetase	K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D      Dole_2058 prolyl-tRNA synthetase	K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D      Dole_3194 threonyl-tRNA synthetase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      Dole_1268 alanyl-tRNA synthetase	K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D      Dole_3040 phenylalanyl-tRNA synthetase, alpha subunit	K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D      Dole_3039 phenylalanyl-tRNA synthetase, beta subunit	K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D      Dole_0081 aminotransferase class I and II	K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D      Dole_0292 aminotransferase class I and II	K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D      Dole_2779 aminotransferase class I and II	K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D      Dole_1983 histidinol-phosphate aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      Dole_0680 8-amino-7-oxononanoate synthase	K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D      Dole_2493 acetylornithine and succinylornithine aminotransferase	K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D      Dole_0961 diaminobutyrate--2-oxoglutarate aminotransferase	K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D      Dole_1070 aminotransferase class-III	K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D      Dole_0679 adenosylmethionine-8-amino-7-oxononanoate aminotransferase	K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D      Dole_1545 glutamate-1-semialdehyde-2,1-aminomutase	K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D      Dole_1132 aminotransferase class-III	K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D      Dole_2663 branched-chain amino acid aminotransferase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      Dole_3221 phosphoserine aminotransferase	K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D      Dole_1837 DegT/DnrJ/EryC1/StrS aminotransferase	K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
C    00199 Cytochrome P450
C    00194 Photosynthesis proteins [BR:dol00194]
D      Dole_0192 Rieske (2Fe-2S) domain protein	K02636 petC; cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
D      Dole_0604 ATP synthase F1, epsilon subunit	K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D      Dole_0603 ATP synthase F1, beta subunit	K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D      Dole_0602 ATP synthase F1, gamma subunit	K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D      Dole_0601 ATP synthase F1, alpha subunit	K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D      Dole_0600 ATP synthase F1, delta subunit	K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D      Dole_0598 H+transporting two-sector ATPase B/B' subunit	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      Dole_0599 H+transporting two-sector ATPase B/B' subunit	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      Dole_0803 H+transporting two-sector ATPase B/B' subunit	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      Dole_0804 H+transporting two-sector ATPase B/B' subunit	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      Dole_0631 ATP synthase F0, C subunit	K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D      Dole_0802 ATP synthase F0, C subunit	K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D      Dole_0800 ATP synthase F0, C subunit	K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D      Dole_0630 ATP synthase F0, A subunit	K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D      Dole_0801 ATP synthase F0, A subunit	K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D      Dole_0628 conserved hypothetical protein	K02116 atpI; ATP synthase protein I
D      Dole_0798 hypothetical protein	K02116 atpI; ATP synthase protein I
B
B  09182 Protein families: genetic information processing
C    03000 Transcription factors [BR:dol03000]
D      Dole_2617 regulatory protein GntR HTH	K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D      Dole_0114 regulatory protein GntR HTH	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D      Dole_2367 transcriptional regulator, TetR family	K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D      Dole_1548 transcriptional regulator, TetR family	K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D      Dole_2892 transcriptional regulator, TetR family	K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D      Dole_1620 transcriptional regulator, MarR family	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D      Dole_1454 transcriptional regulator, MarR family	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D      Dole_0342 ferric uptake regulator, Fur family	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D      Dole_0067 cyclic nucleotide-binding protein	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D      Dole_2760 cyclic nucleotide-binding protein	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D      Dole_2199 cyclic nucleotide-binding protein	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D      Dole_2102 transcriptional regulator, Crp/Fnr family	K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D      Dole_2876 transcriptional regulator, ArsR family	K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D      Dole_0391 biotin--acetyl-CoA-carboxylase ligase	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D      Dole_3125 putative sigma54 specific transcriptional regulator	K12146 hyfR; hydrogenase-4 transcriptional activator
D      Dole_3126 sigma-54 factor interaction domain-containing protein	K12146 hyfR; hydrogenase-4 transcriptional activator
D      Dole_1470 transcriptional regulator, NifA subfamily, Fis Family	K15836 fhlA; formate hydrogenlyase transcriptional activator
D      Dole_1785 transcriptional regulator, NifA subfamily, Fis Family	K02584 nifA; Nif-specific regulatory protein
D      Dole_0207 putative transcriptional regulator, ModE family	K02019 modE; molybdate transport system regulatory protein
D      Dole_1632 parB-like partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D      Dole_2368 ParB domain protein nuclease	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D      Dole_2821 transcriptional regulator, CarD family	K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D      Dole_3195 Uracil phosphoribosyltransferase	K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D      Dole_1574 protein of unknown function DUF179	K07735 algH; putative transcriptional regulator
D      Dole_1504 transcriptional regulator, TraR/DksA family	K06204 dksA; RNA polymerase-binding transcription factor
D      Dole_2080 ATP-cone domain protein	K07738 nrdR; transcriptional repressor NrdR
D      Dole_2796 MraZ protein	K03925 mraZ; transcriptional regulator MraZ
C    03021 Transcription machinery [BR:dol03021]
D      Dole_0733 DNA-directed RNA polymerase, alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D      Dole_0702 DNA-directed RNA polymerase, beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D      Dole_0703 DNA-directed RNA polymerase, beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D      Dole_2222 DNA-directed RNA polymerase, omega subunit	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D      Dole_2151 RNA polymerase, sigma 70 subunit, RpoD family	K03086 rpoD; RNA polymerase primary sigma factor
D      Dole_2474 putative RNA polymerase, sigma 70 family subunit	K03089 rpoH; RNA polymerase sigma-32 factor
D      Dole_0506 RNA polymerase, sigma 54 subunit, RpoN	K03092 rpoN; RNA polymerase sigma-54 factor
D      Dole_3036 NusA antitermination factor	K02600 nusA; transcription termination/antitermination protein NusA
D      Dole_2075 NusB antitermination factor	K03625 nusB; transcription antitermination protein NusB
D      Dole_0697 NusG antitermination factor	K02601 nusG; transcription termination/antitermination protein NusG
D      Dole_1615 response regulator receiver protein	K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D      Dole_0140 response regulator receiver protein	K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D      Dole_2687 anti-sigma-factor antagonist	K04749 rsbV; anti-sigma B factor antagonist
D      Dole_0141 putative anti-sigma regulatory factor, serine/threonine protein kinase	K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D      Dole_2512 positive regulator of sigma E, RseC/MucC	K03803 rseC; sigma-E factor negative regulatory protein RseC
D      Dole_1504 transcriptional regulator, TraR/DksA family	K06204 dksA; RNA polymerase-binding transcription factor
D      Dole_2221 transcription elongation factor GreA	K03624 greA; transcription elongation factor GreA
D      Dole_0470 transcription termination factor Rho	K03628 rho; transcription termination factor Rho
C    03019 Messenger RNA biogenesis [BR:dol03019]
D      Dole_2439 ribonuclease, Rne/Rng family	K08300 rne; ribonuclease E [EC:3.1.26.12]
D      Dole_0098 ribonuclease, Rne/Rng family	K08301 rng; ribonuclease G [EC:3.1.26.-]
D      Dole_1502 Ribonuclease III	K03685 rnc; ribonuclease III [EC:3.1.26.3]
D      Dole_2585 beta-lactamase domain protein	K12574 rnj; ribonuclease J [EC:3.1.-.-]
D      Dole_0260 beta-lactamase domain protein	K12574 rnj; ribonuclease J [EC:3.1.-.-]
D      Dole_0608 RNA binding metal dependent phosphohydrolase	K18682 rny; ribonucrease Y [EC:3.1.-.-]
D      Dole_1164 metal dependent phosphohydrolase	K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D      Dole_0054 DEAD/DEAH box helicase domain protein	K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D      Dole_2349 DEAD/DEAH box helicase domain protein	K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D      Dole_0339 Phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      Dole_3029 Polyribonucleotide nucleotidyltransferase	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D      Dole_0470 transcription termination factor Rho	K03628 rho; transcription termination factor Rho
D      Dole_2111 Diphosphate--fructose-6-phosphate 1-phosphotransferase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D      Dole_0070 chaperone protein DnaK	K04043 dnaK; molecular chaperone DnaK
D      Dole_2982 Heat shock protein 70	K04043 dnaK; molecular chaperone DnaK
D      Dole_0550 chaperonin GroEL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D      Dole_0973 polynucleotide adenylyltransferase/metal dependent phosphohydrolase	K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D      Dole_0503 conserved hypothetical protein	K06958 rapZ; RNase adapter protein RapZ
D      Dole_1028 DEAD/DEAH box helicase domain protein	K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D      Dole_0980 ATP-dependent helicase HrpA	K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C    03041 Spliceosome
C    03011 Ribosome [BR:dol03011]
D      Dole_1981 ribosomal protein S1	K02945 RP-S1; small subunit ribosomal protein S1
D      Dole_2122 RNA binding S1 domain protein	K02945 RP-S1; small subunit ribosomal protein S1
D      Dole_0474 ribosomal protein S2	K02967 RP-S2; small subunit ribosomal protein S2
D      Dole_0714 ribosomal protein S3	K02982 RP-S3; small subunit ribosomal protein S3
D      Dole_0732 RNA-binding S4 domain protein	K02986 RP-S4; small subunit ribosomal protein S4
D      Dole_0725 ribosomal protein S5	K02988 RP-S5; small subunit ribosomal protein S5
D      Dole_0010 ribosomal protein S6	K02990 RP-S6; small subunit ribosomal protein S6
D      Dole_0705 ribosomal protein S7	K02992 RP-S7; small subunit ribosomal protein S7
D      Dole_0722 ribosomal protein S8	K02994 RP-S8; small subunit ribosomal protein S8
D      Dole_0945 ribosomal protein S9	K02996 RP-S9; small subunit ribosomal protein S9
D      Dole_0707 ribosomal protein S10	K02946 RP-S10; small subunit ribosomal protein S10
D      Dole_0731 ribosomal protein S11	K02948 RP-S11; small subunit ribosomal protein S11
D      Dole_0704 ribosomal protein S12	K02950 RP-S12; small subunit ribosomal protein S12
D      Dole_0730 ribosomal protein S13	K02952 RP-S13; small subunit ribosomal protein S13
D      Dole_0721 ribosomal protein S14	K02954 RP-S14; small subunit ribosomal protein S14
D      Dole_3030 ribosomal protein S15	K02956 RP-S15; small subunit ribosomal protein S15
D      Dole_2309 ribosomal protein S16	K02959 RP-S16; small subunit ribosomal protein S16
D      Dole_0717 ribosomal protein S17	K02961 RP-S17; small subunit ribosomal protein S17
D      Dole_0009 ribosomal protein S18	K02963 RP-S18; small subunit ribosomal protein S18
D      Dole_0712 ribosomal protein S19	K02965 RP-S19; small subunit ribosomal protein S19
D      Dole_2436 ribosomal protein S20	K02968 RP-S20; small subunit ribosomal protein S20
D      Dole_0468 ribosomal protein S21	K02970 RP-S21; small subunit ribosomal protein S21
D      Dole_0699 ribosomal protein L1	K02863 RP-L1; large subunit ribosomal protein L1
D      Dole_0711 ribosomal protein L2	K02886 RP-L2; large subunit ribosomal protein L2
D      Dole_0708 ribosomal protein L3	K02906 RP-L3; large subunit ribosomal protein L3
D      Dole_0709 ribosomal protein L4/L1e	K02926 RP-L4; large subunit ribosomal protein L4
D      Dole_0720 ribosomal protein L5	K02931 RP-L5; large subunit ribosomal protein L5
D      Dole_0723 ribosomal protein L6	K02933 RP-L6; large subunit ribosomal protein L6
D      Dole_0007 ribosomal protein L9	K02939 RP-L9; large subunit ribosomal protein L9
D      Dole_0700 ribosomal protein L10	K02864 RP-L10; large subunit ribosomal protein L10
D      Dole_0698 ribosomal protein L11	K02867 RP-L11; large subunit ribosomal protein L11
D      Dole_0701 ribosomal protein L7/L12	K02935 RP-L7; large subunit ribosomal protein L7/L12
D      Dole_0946 ribosomal protein L13	K02871 RP-L13; large subunit ribosomal protein L13
D      Dole_0718 ribosomal protein L14	K02874 RP-L14; large subunit ribosomal protein L14
D      Dole_0727 ribosomal protein L15	K02876 RP-L15; large subunit ribosomal protein L15
D      Dole_0715 ribosomal protein L16	K02878 RP-L16; large subunit ribosomal protein L16
D      Dole_0734 ribosomal protein L17	K02879 RP-L17; large subunit ribosomal protein L17
D      Dole_0724 ribosomal protein L18	K02881 RP-L18; large subunit ribosomal protein L18
D      Dole_2304 ribosomal protein L19	K02884 RP-L19; large subunit ribosomal protein L19
D      Dole_3041 ribosomal protein L20	K02887 RP-L20; large subunit ribosomal protein L20
D      Dole_0086 ribosomal protein L21	K02888 RP-L21; large subunit ribosomal protein L21
D      Dole_0713 ribosomal protein L22	K02890 RP-L22; large subunit ribosomal protein L22
D      Dole_0710 Ribosomal protein L25/L23	K02892 RP-L23; large subunit ribosomal protein L23
D      Dole_0719 ribosomal protein L24	K02895 RP-L24; large subunit ribosomal protein L24
D      Dole_0087 ribosomal protein L27	K02899 RP-L27; large subunit ribosomal protein L27
D      Dole_2056 ribosomal protein L28	K02902 RP-L28; large subunit ribosomal protein L28
D      Dole_0716 ribosomal protein L29	K02904 RP-L29; large subunit ribosomal protein L29
D      Dole_0726 ribosomal protein L30	K02907 RP-L30; large subunit ribosomal protein L30
D      Dole_0471 ribosomal protein L31	K02909 RP-L31; large subunit ribosomal protein L31
D      Dole_2085 ribosomal protein L32	K02911 RP-L32; large subunit ribosomal protein L32
D      Dole_0099 ribosomal protein L34	K02914 RP-L34; large subunit ribosomal protein L34
D      Dole_3042 ribosomal protein L35	K02916 RP-L35; large subunit ribosomal protein L35
D      Dole_2818 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5	K02897 RP-L25; large subunit ribosomal protein L25
D      Dole_R0015 5S ribosomal RNA	K01985 5SrRNA; 5S ribosomal RNA
D      Dole_R0011 16S ribosomal RNA	K01977 16SrRNA; 16S ribosomal RNA
D      Dole_R0014 23S ribosomal RNA	K01980 23SrRNA; 23S ribosomal RNA
C    03009 Ribosome biogenesis [BR:dol03009]
D      Dole_1502 Ribonuclease III	K03685 rnc; ribonuclease III [EC:3.1.26.3]
D      Dole_1116 GTP-binding protein Era	K03595 era; GTPase
D      Dole_0088 GTP-binding protein Obg/CgtA	K03979 obgE; GTPase [EC:3.6.5.-]
D      Dole_1504 transcriptional regulator, TraR/DksA family	K06204 dksA; RNA polymerase-binding transcription factor
D      Dole_3036 NusA antitermination factor	K02600 nusA; transcription termination/antitermination protein NusA
D      Dole_2075 NusB antitermination factor	K03625 nusB; transcription antitermination protein NusB
D      Dole_0697 NusG antitermination factor	K02601 nusG; transcription termination/antitermination protein NusG
D      Dole_1636 dimethyladenosine transferase	K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D      Dole_2231 sun protein	K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D      Dole_2740 putative methyltransferase	K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D      Dole_1732 protein of unknown function DUF558	K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D      Dole_1192 methyltransferase GidB	K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D      Dole_2795 S-adenosyl-methyltransferase MraW	K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D      Dole_1105 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase	K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D      Dole_1661 hemolysin A	K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D      Dole_1909 RNA methyltransferase, TrmH family, group 3	K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D      Dole_0372 ribosomal RNA methyltransferase RrmJ/FtsJ	K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D      Dole_2658 conserved hypothetical protein	K25136 rlmK; 23S rRNA (guanine2069-N7)-methyltransferase [EC:2.1.1.264]
D      Dole_2035 putative RNA methylase	K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D      Dole_2311 radical SAM enzyme, Cfr family	K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D      Dole_1585 RNA methyltransferase, TrmA family	K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D      Dole_3073 (Uracil-5)-methyltransferase	K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D      Dole_2822 pseudouridine synthase, RluA family	K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D      Dole_0405 pseudouridine synthase	K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D      Dole_2136 GCN5-related N-acetyltransferase	K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D      Dole_0501 ribosomal-protein-alanine acetyltransferase	K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D      Dole_0111 RimK domain protein ATP-grasp	K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D      Dole_2307 16S rRNA processing protein RimM	K02860 rimM; 16S rRNA processing protein RimM
D      Dole_3231 MiaB-like tRNA modifying enzyme YliG	K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D      Dole_1241 protein of unknown function DUF181	K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D      Dole_1373 protein of unknown function DUF181	K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D      Dole_2455 ribosomal protein L11 methyltransferase	K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D      Dole_1487 ribosomal L11 methyltransferase	K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D      Dole_0107 ribosomal L11 methyltransferase	K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D      Dole_2439 ribonuclease, Rne/Rng family	K08300 rne; ribonuclease E [EC:3.1.26.12]
D      Dole_0098 ribonuclease, Rne/Rng family	K08301 rng; ribonuclease G [EC:3.1.26.-]
D      Dole_2800 GTPase EngC	K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D      Dole_2134 small GTP-binding protein	K03977 engA; GTPase
D      Dole_0005 GTP-binding protein HSR1-related	K03665 hflX; GTPase
D      Dole_1428 Sua5/YciO/YrdC/YwlC family protein	K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D      Dole_2057 (p)ppGpp synthetase I, SpoT/RelA	K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D      Dole_3033 ribosome-binding factor A	K02834 rbfA; ribosome-binding factor A
D      Dole_3037 protein of unknown function DUF150	K09748 rimP; ribosome maturation factor RimP
D      Dole_0092 iojap-like protein	K09710 ybeB; ribosome-associated protein
D      Dole_0777 protein of unknown function UPF0054	K07042 ybeY; probable rRNA maturation factor
D      Dole_1077 protein of unknown function UPF0044	K07574 yhbY; RNA-binding protein
D      Dole_0505 sigma 54 modulation protein/ribosomal protein S30EA	K05808 hpf; ribosome hibernation promoting factor
D      Dole_0142 Protein of unknown function DUF933	K06942 ychF; ribosome-binding ATPase
C    03016 Transfer RNA biogenesis [BR:dol03016]
D      Dole_2108 metal-dependent hydrolase of the beta-lactamase superfamily III-like protein	K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D      Dole_2755 CBS domain containing protein	K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D      Dole_0635 CBS domain containing protein	K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D      Dole_2571 protein of unknown function UPF0027	K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D      Dole_0688 protein of unknown function DUF101	K24956 ZBTB8OS; protein archease
D      Dole_2533 glutamyl-tRNA synthetase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      Dole_2058 prolyl-tRNA synthetase	K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D      Dole_1191 isoleucyl-tRNA synthetase	K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D      Dole_2438 leucyl-tRNA synthetase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      Dole_3204 methionyl-tRNA synthetase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D      Dole_1595 glutaminyl-tRNA synthetase	K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D      Dole_3215 arginyl-tRNA synthetase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      Dole_2847 lysyl-tRNA synthetase	K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D      Dole_0670 aspartyl-tRNA synthetase	K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D      Dole_1268 alanyl-tRNA synthetase	K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D      Dole_0096 asparaginyl-tRNA synthetase	K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D      Dole_3194 threonyl-tRNA synthetase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      Dole_2745 seryl-tRNA synthetase	K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D      Dole_1166 cysteine synthase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      Dole_1667 cysteinyl-tRNA synthetase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      Dole_1729 valyl-tRNA synthetase	K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D      Dole_0669 histidyl-tRNA synthetase	K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D      Dole_3040 phenylalanyl-tRNA synthetase, alpha subunit	K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D      Dole_3039 phenylalanyl-tRNA synthetase, beta subunit	K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D      Dole_0609 tyrosyl-tRNA synthetase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      Dole_2757 tryptophanyl-tRNA synthetase	K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D      Dole_2227 D-tyrosyl-tRNA(Tyr) deacylase	K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D      Dole_2448 histidine triad (HIT) protein	K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D      Dole_1581 protein of unknown function UPF0066	K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D      Dole_0466 tRNA pseudouridine synthase A	K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D      Dole_3031 tRNA pseudouridine synthase B	K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D      Dole_2243 aminotransferase class V	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      Dole_0756 aminotransferase class V	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      Dole_1428 Sua5/YciO/YrdC/YwlC family protein	K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D      Dole_1764 tRNA delta(2)-isopentenylpyrophosphate transferase	K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D      Dole_0104 tRNA modification GTPase TrmE	K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D      Dole_0957 glucose inhibited division protein A	K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D      Dole_3249 selenide, water dikinase	K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D      Dole_2032 3'(2'),5'-bisphosphate nucleotidase	K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D      Dole_0100 ribonuclease P protein component	K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D      Dole_R0032 RNA component of RNaseP	K01978 rnpB; M1 RNA
D      Dole_0448 Exoribonuclease II	K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D      Dole_3191 3'-5' exonuclease	K03684 rnd; ribonuclease D [EC:3.1.13.5]
D      Dole_1266 2'-5' RNA ligase	K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D      Dole_1544 phosphotransferase KptA/Tpt1	K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D      Dole_2580 ABC transporter-related protein	K06020 ettA; energy-dependent translational throttle protein EttA
D      Dole_1711 glycyl-tRNA synthetase, alpha subunit	K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D      Dole_1712 glycyl-tRNA synthetase, beta subunit	K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D      Dole_3003 CMP/dCMP deaminase zinc-binding	K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D      Dole_2030 CMP/dCMP deaminase zinc-binding	K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D      Dole_2866 putative TIM-barrel protein, nifR3 family	K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D      Dole_2355 RNA modification enzyme, MiaB family	K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D      Dole_1749 MiaB-like tRNA modifying enzyme	K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D      Dole_1085 Methyltransferase type 12	K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D      Dole_2624 RNA methyltransferase, TrmH family, group 1	K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D      Dole_2306 tRNA (guanine-N1)-methyltransferase	K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D      Dole_1750 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D      Dole_2223 PP-loop domain protein	K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D      Dole_0083 Queuosine biosynthesis protein	K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D      Dole_0496 exsB protein	K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D      Dole_1493 6-pyruvoyl tetrahydropterin synthase and hypothetical protein	K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D      Dole_0497 Radical SAM domain protein	K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D      Dole_2198 GTP cyclohydrolase I	K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D      Dole_1382 conserved hypothetical protein	K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D      Dole_0182 4Fe-4S ferredoxin, iron-sulfur binding domain protein	K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D      Dole_0176 4Fe-4S ferredoxin iron-sulfur binding domain protein	K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D      Dole_2589 conserved hypothetical protein	K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D      Dole_2545 PBS lyase HEAT domain protein repeat-containing protein	K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D      Dole_1180 protein of unknown function DUF208	K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D      Dole_0084 queuine tRNA-ribosyltransferase	K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D      Dole_0068 tRNA(Ile)-lysidine synthetase	K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D      Dole_1857 peptidase M22 glycoprotease	K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D      Dole_0294 putative metalloendopeptidase, glycoprotease family	K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D      Dole_0774 protein of unknown function UPF0079	K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D      Dole_3029 Polyribonucleotide nucleotidyltransferase	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C    03012 Translation factors [BR:dol03012]
D      Dole_3035 translation initiation factor IF-2	K02519 infB; translation initiation factor IF-2
D      Dole_3043 initiation factor 3	K02520 infC; translation initiation factor IF-3
D      Dole_1374 ABC transporter-related protein	K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D      Dole_0475 translation elongation factor Ts	K02357 tsf; elongation factor Ts
D      Dole_0695 translation elongation factor Tu	K02358 tuf; elongation factor Tu
D      Dole_0706 translation elongation factor Tu	K02358 tuf; elongation factor Tu
D      Dole_1660 translation elongation factor G	K02355 fusA; elongation factor G
D      Dole_1617 translation elongation factor G	K02355 fusA; elongation factor G
D      Dole_1934 translation elongation factor G	K02355 fusA; elongation factor G
D      Dole_0653 selenocysteine-specific translation elongation factor	K03833 selB; selenocysteine-specific elongation factor
D      Dole_0472 peptide chain release factor 1	K02835 prfA; peptide chain release factor 1
D      Dole_0477 ribosome recycling factor	K02838 frr; ribosome recycling factor
D      Dole_0473 modification methylase, HemK family	K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D      Dole_2819 Aminoacyl-tRNA hydrolase	K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D      Dole_0729 translation initiation factor IF-1	K02518 infA; translation initiation factor IF-1
D      Dole_2358 translation elongation factor P	K02356 efp; elongation factor P
D      Dole_3164 tRNA synthetase class II (D K and N)	K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D      Dole_1767 peptide chain release factor 2	K02836 prfB; peptide chain release factor 2
D      Dole_0414 peptide chain release factor 3	K02837 prfC; peptide chain release factor 3
D      Dole_1725 Class I peptide chain release factor	K15034 yaeJ; ribosome-associated protein
C    03110 Chaperones and folding catalysts [BR:dol03110]
D      Dole_2481 ATP-dependent Clp protease, ATP-binding subunit clpA	K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D      Dole_2696 ATPase AAA-2 domain protein	K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D      Dole_2694 ATP-dependent Clp protease, ATP-binding subunit ClpX	K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D      Dole_1226 ATPase AAA-2 domain protein	K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D      Dole_2973 ATPase AAA-2 domain protein	K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D      Dole_2495 heat shock protein HslVU, ATPase subunit HslU	K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D      Dole_2214 heat shock protein Hsp90	K04079 HSP90A; molecular chaperone HtpG
D      Dole_0070 chaperone protein DnaK	K04043 dnaK; molecular chaperone DnaK
D      Dole_2982 Heat shock protein 70	K04043 dnaK; molecular chaperone DnaK
D      Dole_0550 chaperonin GroEL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D      Dole_1492 chaperone protein DnaJ	K03686 dnaJ; molecular chaperone DnaJ
D      Dole_1422 chaperone DnaJ domain protein	K05516 cbpA; curved DNA-binding protein
D      Dole_1747 heat shock protein DnaJ domain protein	K05801 djlA; DnaJ like chaperone protein
D      Dole_0069 GrpE protein	K03687 GRPE; molecular chaperone GrpE
D      Dole_2522 heat shock protein Hsp20	K13993 HSP20; HSP20 family protein
D      Dole_2643 heat shock protein Hsp20	K13993 HSP20; HSP20 family protein
D      Dole_1100 heat shock protein Hsp20	K13993 HSP20; HSP20 family protein
D      Dole_2642 heat shock protein Hsp20	K13993 HSP20; HSP20 family protein
D      Dole_0549 chaperonin Cpn10	K04078 groES; chaperonin GroES
D      Dole_2815 protease Do	K04771 degP; serine protease Do [EC:3.4.21.107]
D      Dole_3044 ATP-dependent metalloprotease FtsH	K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D      Dole_0630 ATP synthase F0, A subunit	K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D      Dole_0801 ATP synthase F0, A subunit	K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D      Dole_0927 hypothetical protein	K07803 zraP; zinc resistance-associated protein
D      Dole_0425 zinc-resistance associated protein	K07803 zraP; zinc resistance-associated protein
D      Dole_0429 zinc-resistance associated protein	K07803 zraP; zinc resistance-associated protein
D      Dole_1517 hydrogenase nickel insertion protein HypA	K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D      Dole_0298 hydrogenase accessory protein HypB	K04652 hypB; hydrogenase nickel incorporation protein HypB
D      Dole_0197 delta-subunit of ethylbenzene dehydrogenase	K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D      Dole_1460 peptidyl-prolyl cis-trans isomerase cyclophilin type	K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D      Dole_0268 PpiC-type peptidyl-prolyl cis-trans isomerase	K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D      Dole_1577 peptidylprolyl isomerase FKBP-type	K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D      Dole_2409 peptidylprolyl isomerase FKBP-type	K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D      Dole_1707 PpiC-type peptidyl-prolyl cis-trans isomerase	K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D      Dole_1513 thioredoxin	K03671 TXN; thioredoxin
D      Dole_2886 Thioredoxin domain	K03671 TXN; thioredoxin
D      Dole_3070 thioredoxin	K03671 TXN; thioredoxin
D      Dole_2645 thioredoxin	K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D      Dole_1464 glutaredoxin 3	K03676 grxC; glutaredoxin 3
C    04131 Membrane trafficking [BR:dol04131]
D      Dole_2521 Phospholipase D	K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4]
D      Dole_2625 Nucleoside-diphosphate kinase	K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D      Dole_1083 hypothetical protein	K12483 EHD1; EH domain-containing protein 1
D      Dole_0500 glyceraldehyde-3-phosphate dehydrogenase, type I	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      Dole_0222 Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      Dole_2125 pyruvate kinase	K00873 PK; pyruvate kinase [EC:2.7.1.40]
D      Dole_2214 heat shock protein Hsp90	K04079 HSP90A; molecular chaperone HtpG
C    04121 Ubiquitin system [BR:dol04121]
C    03051 Proteasome [BR:dol03051]
D      Dole_2214 heat shock protein Hsp90	K04079 HSP90A; molecular chaperone HtpG
C    03032 DNA replication proteins [BR:dol03032]
D      Dole_2729 Ribonuclease H	K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D      Dole_1985 ribonuclease H	K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D      Dole_1717 histone family protein DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta
D      Dole_2857 histone family protein DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta
D      Dole_1031 histone family protein DNA-binding protein	K04764 ihfA; integration host factor subunit alpha
D      Dole_3207 histone family protein DNA-binding protein	K05788 ihfB; integration host factor subunit beta
D      Dole_0001 chromosomal replication initiator protein DnaA	K02313 dnaA; chromosomal replication initiator protein
D      Dole_0006 replicative DNA helicase	K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D      Dole_2153 DNA primase	K02316 dnaG; DNA primase [EC:2.7.7.101]
D      Dole_0044 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_2923 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_1885 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      Dole_0261 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      Dole_0094 DNA polymerase III, beta subunit	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D      Dole_1188 DNA polymerase III delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D      Dole_3206 DNA polymerase III, delta prime subunit	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D      Dole_0542 DNA polymerase III, subunits gamma and tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D      Dole_2303 Ribonuclease H	K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D      Dole_2573 DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      Dole_1715 DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D      Dole_0821 DNA adenine methylase	K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D      Dole_0673 DNA gyrase, A subunit	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D      Dole_0095 DNA gyrase, B subunit	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D      Dole_2445 DNA topoisomerase I	K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C    03036 Chromosome and associated proteins [BR:dol03036]
D      Dole_1087 Tetratricopeptide TPR_2 repeat protein	K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D      Dole_1502 Ribonuclease III	K03685 rnc; ribonuclease III [EC:3.1.26.3]
D      Dole_1717 histone family protein DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta
D      Dole_2857 histone family protein DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta
D      Dole_1031 histone family protein DNA-binding protein	K04764 ihfA; integration host factor subunit alpha
D      Dole_3207 histone family protein DNA-binding protein	K05788 ihfB; integration host factor subunit beta
D      Dole_1422 chaperone DnaJ domain protein	K05516 cbpA; curved DNA-binding protein
D      Dole_0001 chromosomal replication initiator protein DnaA	K02313 dnaA; chromosomal replication initiator protein
D      Dole_1719 chromosome segregation protein SMC	K03529 smc; chromosome segregation protein
D      Dole_2758 chromosome segregation and condensation protein ScpA	K05896 scpA; segregation and condensation protein A
D      Dole_2759 segregation and condensation protein B	K06024 scpB; segregation and condensation protein B
D      Dole_2783 cell division protein FtsA	K03590 ftsA; cell division protein FtsA
D      Dole_2326 Septum formation initiator	K05589 ftsB; cell division protein FtsB
D      Dole_2450 cell division ATP-binding protein FtsE	K09812 ftsE; cell division transport system ATP-binding protein
D      Dole_2793 Peptidoglycan glycosyltransferase	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D      Dole_2586 cell divisionFtsK/SpoIIIE	K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D      Dole_2794 conserved hypothetical membrane protein	K03586 ftsL; cell division protein FtsL
D      Dole_2784 Polypeptide-transport-associated domain protein FtsQ-type	K03589 ftsQ; cell division protein FtsQ
D      Dole_2788 cell division protein FtsW	K03588 ftsW; cell division protein FtsW
D      Dole_2451 protein of unknown function DUF214	K09811 ftsX; cell division transport system permease protein
D      Dole_2782 cell division protein FtsZ	K03531 ftsZ; cell division protein FtsZ
D      Dole_0253 Cell division GTPase-like protein	K03531 ftsZ; cell division protein FtsZ
D      Dole_0255 Tubulin/FtsZ GTPase	K03531 ftsZ; cell division protein FtsZ
D      Dole_0606 hypothetical protein	K09892 zapB; cell division protein ZapB
D      Dole_1127 N-acetylmuramoyl-L-alanine amidase	K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D      Dole_2691 cell wall hydrolase/autolysin	K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D      Dole_2894 efflux transporter, RND family, MFP subunit	K03585 acrA; membrane fusion protein, multidrug efflux system
D      Dole_0621 secretion protein HlyD	K03585 acrA; membrane fusion protein, multidrug efflux system
D      Dole_0592 cell shape determining protein, MreB/Mrl family	K03569 mreB; rod shape-determining protein MreB and related proteins
D      Dole_0593 rod shape-determining protein MreC	K03570 mreC; rod shape-determining protein MreC
D      Dole_0596 rod shape-determining protein RodA	K05837 rodA; rod shape determining protein RodA
D      Dole_1631 Cobyrinic acid ac-diamide synthase	K03496 parA; chromosome partitioning protein
D      Dole_1576 Cobyrinic acid ac-diamide synthase	K03496 parA; chromosome partitioning protein
D      Dole_1269 Cobyrinic acid ac-diamide synthase	K03496 parA; chromosome partitioning protein
D      Dole_2598 Cobyrinic acid ac-diamide synthase	K03496 parA; chromosome partitioning protein
D      Dole_1632 parB-like partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D      Dole_2368 ParB domain protein nuclease	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D      Dole_0957 glucose inhibited division protein A	K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D      Dole_1192 methyltransferase GidB	K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D      Dole_2497 integrase family protein	K03733 xerC; integrase/recombinase XerC
D      Dole_1674 tyrosine recombinase XerD	K04763 xerD; integrase/recombinase XerD
D      Dole_2709 integrase family protein	K04763 xerD; integrase/recombinase XerD
D      Dole_1956 conserved hypothetical protein	K03593 mrp; ATP-binding protein involved in chromosome partitioning
D      Dole_0416 filamentation induced by cAMP protein Fic	K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D      Dole_0415 filamentation induced by cAMP protein Fic	K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D      Dole_1117 GTP-binding protein HSR1-related	K03978 engB; GTP-binding protein
C    03400 DNA repair and recombination proteins [BR:dol03400]
D      Dole_1170 methylated-DNA--protein-cysteine methyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D      Dole_1519 A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D      Dole_2166 DNA-(apurinic or apyrimidinic site) lyase	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D      Dole_1935 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D      Dole_3028 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut	K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D      Dole_2514 DNA-3-methyladenine glycosylase I	K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D      Dole_2558 exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D      Dole_1880 apurinic endonuclease Apn1	K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D      Dole_2106 single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      Dole_1715 DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D      Dole_2573 DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      Dole_0632 excinuclease ABC, A subunit	K03701 uvrA; excinuclease ABC subunit A
D      Dole_2376 excinuclease ABC, B subunit	K03702 uvrB; excinuclease ABC subunit B
D      Dole_2375 excinuclease ABC, C subunit	K03703 uvrC; excinuclease ABC subunit C
D      Dole_2115 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      Dole_2919 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      Dole_0702 DNA-directed RNA polymerase, beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D      Dole_0703 DNA-directed RNA polymerase, beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D      Dole_0733 DNA-directed RNA polymerase, alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D      Dole_2222 DNA-directed RNA polymerase, omega subunit	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D      Dole_1705 transcription-repair coupling factor	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D      Dole_1126 DNA mismatch repair protein MutS	K03555 mutS; DNA mismatch repair protein MutS
D      Dole_0149 DNA mismatch repair protein MutL	K03572 mutL; DNA mismatch repair protein MutL
D      Dole_1665 exodeoxyribonuclease VII, large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D      Dole_1664 exodeoxyribonuclease VII, small subunit	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D      Dole_1885 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      Dole_0261 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      Dole_0094 DNA polymerase III, beta subunit	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D      Dole_1188 DNA polymerase III delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D      Dole_3206 DNA polymerase III, delta prime subunit	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D      Dole_0542 DNA polymerase III, subunits gamma and tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D      Dole_0044 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_2923 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_0821 DNA adenine methylase	K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D      Dole_1055 exodeoxyribonuclease V, beta subunit	K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D      Dole_1054 exodeoxyribonuclease V, gamma subunit	K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D      Dole_1056 exodeoxyribonuclease V, alpha subunit	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D      Dole_2348 helicase, RecD/TraA family	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D      Dole_2673 helicase, RecD/TraA family	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D      Dole_1267 recA protein	K03553 recA; recombination protein RecA
D      Dole_2206 DNA recombination protein RuvA domain I	K03550 ruvA; holliday junction DNA helicase RuvA
D      Dole_2205 Holliday junction DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D      Dole_2207 Crossover junction endodeoxyribonuclease	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D      Dole_0025 primosomal protein N'	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D      Dole_0373 DNA repair protein RadA	K04485 radA; DNA repair protein RadA/Sms
D      Dole_0250 putative transcriptional regulator	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D      Dole_1709 DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O)
D      Dole_0540 recombination protein RecR	K06187 recR; recombination protein RecR
D      Dole_2516 DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N)
D      Dole_2130 conserved hypothetical cytosolic protein	K03554 rdgC; recombination associated protein RdgC
D      Dole_2989 CRISPR-associated protein Cas1	K15342 cas1; CRISP-associated protein Cas1
D      Dole_0673 DNA gyrase, A subunit	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D      Dole_0095 DNA gyrase, B subunit	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D      Dole_2445 DNA topoisomerase I	K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D      Dole_1717 histone family protein DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta
D      Dole_2857 histone family protein DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta
D      Dole_1031 histone family protein DNA-binding protein	K04764 ihfA; integration host factor subunit alpha
D      Dole_3207 histone family protein DNA-binding protein	K05788 ihfB; integration host factor subunit beta
D      Dole_0236 DNA-directed DNA polymerase	K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D      Dole_0229 DNA-directed DNA polymerase	K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D      Dole_0234 transcriptional repressor, LexA family	K01356 lexA; repressor LexA [EC:3.4.21.88]
D      Dole_0237 DNA polymerase III, alpha subunit	K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D      Dole_3032 phosphoesterase RecJ domain protein	K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C    03029 Mitochondrial biogenesis [BR:dol03029]
D      Dole_3035 translation initiation factor IF-2	K02519 infB; translation initiation factor IF-2
D      Dole_3043 initiation factor 3	K02520 infC; translation initiation factor IF-3
D      Dole_0475 translation elongation factor Ts	K02357 tsf; elongation factor Ts
D      Dole_0695 translation elongation factor Tu	K02358 tuf; elongation factor Tu
D      Dole_0706 translation elongation factor Tu	K02358 tuf; elongation factor Tu
D      Dole_1660 translation elongation factor G	K02355 fusA; elongation factor G
D      Dole_1617 translation elongation factor G	K02355 fusA; elongation factor G
D      Dole_1934 translation elongation factor G	K02355 fusA; elongation factor G
D      Dole_1116 GTP-binding protein Era	K03595 era; GTPase
D      Dole_0609 tyrosyl-tRNA synthetase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      Dole_2438 leucyl-tRNA synthetase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      Dole_0670 aspartyl-tRNA synthetase	K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D      Dole_3215 arginyl-tRNA synthetase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      Dole_0151 glutamyl-tRNA(Gln) amidotransferase, A subunit	K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D      Dole_0013 glutamyl-tRNA(Gln) amidotransferase, B subunit	K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D      Dole_0152 glutamyl-tRNA(Gln) amidotransferase, C subunit	K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D      Dole_0044 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_2923 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein
D      Dole_2844 surface antigen (D15)	K07277 SAM50; outer membrane protein insertion porin family
D      Dole_0070 chaperone protein DnaK	K04043 dnaK; molecular chaperone DnaK
D      Dole_2982 Heat shock protein 70	K04043 dnaK; molecular chaperone DnaK
D      Dole_0069 GrpE protein	K03687 GRPE; molecular chaperone GrpE
D      Dole_0550 chaperonin GroEL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D      Dole_0549 chaperonin Cpn10	K04078 groES; chaperonin GroES
D      Dole_1492 chaperone protein DnaJ	K03686 dnaJ; molecular chaperone DnaJ
D      Dole_2243 aminotransferase class V	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      Dole_0756 aminotransferase class V	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      Dole_1956 conserved hypothetical protein	K03593 mrp; ATP-binding protein involved in chromosome partitioning
D      Dole_0102 60 kDa inner membrane insertion protein	K03217 yidC; YidC/Oxa1 family membrane protein insertase
D      Dole_2214 heat shock protein Hsp90	K04079 HSP90A; molecular chaperone HtpG
B
B  09183 Protein families: signaling and cellular processes
C    02000 Transporters [BR:dol02000]
D      Dole_2836 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA	K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D      Dole_3226 ABC transporter-related protein	K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D      Dole_3227 ABC transporter-related protein	K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D      Dole_1627 ABC transporter-related protein	K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D      Dole_0171 ABC transporter-related protein	K15738 uup; ABC transport system ATP-binding/permease protein
D      Dole_0208 molybdenum ABC transporter, periplasmic molybdate-binding protein	K02020 modA; molybdate transport system substrate-binding protein
D      Dole_0209 binding-protein-dependent transport systems inner membrane component	K02018 modB; molybdate transport system permease protein
D      Dole_0210 ABC transporter-related protein	K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D      Dole_0214 ABC transporter-related protein	K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D      Dole_2634 extracellular solute-binding protein family 1	K15495 wtpA; molybdate/tungstate transport system substrate-binding protein
D      Dole_2633 binding-protein-dependent transport systems inner membrane component	K15496 wtpB; molybdate/tungstate transport system permease protein
D      Dole_2632 ABC transporter-related protein	K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6]
D      Dole_2631 ABC transporter, periplasmic substrate-binding protein	K05772 tupA; tungstate transport system substrate-binding protein
D      Dole_2630 binding-protein-dependent transport systems inner membrane component	K05773 tupB; tungstate transport system permease protein
D      Dole_2629 ABC transporter-related protein	K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D      Dole_0212 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein	K15553 ssuA; sulfonate transport system substrate-binding protein
D      Dole_0213 binding-protein-dependent transport systems inner membrane component	K15554 ssuC; sulfonate transport system permease protein
D      Dole_2763 Substrate-binding region of ABC-type glycine betaine transport system	K02002 proX; glycine betaine/proline transport system substrate-binding protein
D      Dole_2764 binding-protein-dependent transport systems inner membrane component	K02001 proW; glycine betaine/proline transport system permease protein
D      Dole_2765 glycine betaine/L-proline ABC transporter, ATPase subunit	K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D      Dole_1015 Mammalian cell entry related domain protein	K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D      Dole_0031 Mammalian cell entry related domain protein	K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D      Dole_0033 protein of unknown function DUF140	K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D      Dole_1017 protein of unknown function DUF140	K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D      Dole_1016 ABC transporter-related protein	K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D      Dole_1014 ABC-type transport system auxiliary component-like protein	K18480 linN; cholesterol transport system auxiliary component
D      Dole_2279 toluene tolerance family protein	K07323 mlaC; phospholipid transport system substrate-binding protein
D      Dole_1925 phosphate binding protein	K02040 pstS; phosphate transport system substrate-binding protein
D      Dole_1926 phosphate ABC transporter, inner membrane subunit PstC	K02037 pstC; phosphate transport system permease protein
D      Dole_1927 phosphate ABC transporter, inner membrane subunit PstA	K02038 pstA; phosphate transport system permease protein
D      Dole_1928 phosphate ABC transporter, ATPase subunit	K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D      Dole_0833 Extracellular ligand-binding receptor	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      Dole_3009 extracellular ligand-binding receptor	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      Dole_0834 inner-membrane translocator	K01997 livH; branched-chain amino acid transport system permease protein
D      Dole_3010 inner-membrane translocator	K01997 livH; branched-chain amino acid transport system permease protein
D      Dole_3011 inner-membrane translocator	K01998 livM; branched-chain amino acid transport system permease protein
D      Dole_0835 inner-membrane translocator	K01998 livM; branched-chain amino acid transport system permease protein
D      Dole_0836 ABC transporter-related protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      Dole_3008 ABC transporter-related protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      Dole_0837 ABC transporter-related protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      Dole_3007 ABC transporter-related protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      Dole_0032 hypothetical protein	K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D      Dole_0941 oligopeptide/dipeptide ABC transporter, ATPase subunit	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      Dole_0940 oligopeptide/dipeptide ABC transporter, ATPase subunit	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      Dole_0942 extracellular solute-binding protein family 5	K13893 yejA; microcin C transport system substrate-binding protein
D      Dole_0944 binding-protein-dependent transport systems inner membrane component	K13894 yejB; microcin C transport system permease protein
D      Dole_0943 binding-protein-dependent transport systems inner membrane component	K13895 yejE; microcin C transport system permease protein
D      Dole_1653 periplasmic binding protein	K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D      Dole_1652 transport system permease protein	K02015 ABC.FEV.P; iron complex transport system permease protein
D      Dole_1651 ABC transporter-related protein	K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D      Dole_2060 periplasmic binding protein	K25034 btuF; cobalamin transport system substrate-binding protein
D      Dole_2061 transport system permease protein	K25027 btuC; cobalamin transport system permease protein
D      Dole_2062 ABC transporter-related protein	K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D      Dole_0400 periplasmic solute binding protein	K09815 znuA; zinc transport system substrate-binding protein
D      Dole_0402 ABC-3 protein	K09816 znuB; zinc transport system permease protein
D      Dole_0401 ABC transporter-related protein	K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D      Dole_2020 cobalt ABC transporter, inner membrane subunit CbiQ	K02008 cbiQ; cobalt/nickel transport system permease protein
D      Dole_2022 cobalamin (vitamin B12) biosynthesis CbiM protein	K02007 cbiM; cobalt/nickel transport system permease protein
D      Dole_2019 ABC transporter-related protein	K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D      Dole_2023 conserved hypothetical protein	K10094 cbiK; nickel transport protein
D      Dole_2021 conserved hypothetical protein	K16915 cbiL; nickel transport protein
D      Dole_1284 ABC-2 type transporter	K09690 wzm; homopolymeric O-antigen transport system permease protein
D      Dole_1285 ABC transporter-related protein	K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D      Dole_1431 permease YjgP/YjgQ family protein	K07091 lptF; lipopolysaccharide export system permease protein
D      Dole_1432 permease YjgP/YjgQ family protein	K11720 lptG; lipopolysaccharide export system permease protein
D      Dole_0507 ABC transporter-related protein	K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D      Dole_2069 ABC-2 type transporter	K25151 gldF; gliding motility-associated transport system permease protein
D      Dole_2070 ABC transporter-related protein	K25152 gldA; gliding motility-associated transport system ATP-binding protein
D      Dole_2068 ABC-type transport system protein involved in gliding motility auxiliary component-like protein	K25153 gldG; gliding motility-associatede transport system auxiliary component
D      Dole_0811 ABC-2 type transporter	K25180 ybhR; drug efflux transport system permease protein
D      Dole_0810 ABC-2 type transporter	K25181 ybhS; drug efflux transport system permease protein
D      Dole_0809 ABC transporter-related protein	K25182 ybhF; drug efflux transport system ATP-binding protein
D      Dole_0808 ABC transporter-related protein	K25182 ybhF; drug efflux transport system ATP-binding protein
D      Dole_0807 secretion protein HlyD family protein	K25183 ybhG; membrane fusion protein YbhG
D      Dole_2846 lipoprotein releasing system, transmembrane protein, LolC/E family	K09808 lolC_E; lipoprotein-releasing system permease protein
D      Dole_2845 ABC transporter-related protein	K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D      Dole_2451 protein of unknown function DUF214	K09811 ftsX; cell division transport system permease protein
D      Dole_2450 cell division ATP-binding protein FtsE	K09812 ftsE; cell division transport system ATP-binding protein
D      Dole_0153 hypothetical protein	K01992 ABC-2.P; ABC-2 type transport system permease protein
D      Dole_2132 ABC transporter-related protein	K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D      Dole_0916 protein of unknown function DUF214	K02004 ABC.CD.P; putative ABC transport system permease protein
D      Dole_0917 ABC transporter-related protein	K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D      Dole_1561 ABC transporter-related protein	K09013 sufC; Fe-S cluster assembly ATP-binding protein
D      Dole_1343 sodium/sulphate symporter	K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D      Dole_1347 response regulator receiver protein	K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D      Dole_1359 anion transporter	K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D      Dole_0794 sodium/sulphate symporter	K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D      Dole_0413 MATE efflux family protein	K26939 norM; MATE family, multidrug efflux pump
D      Dole_0763 major facilitator superfamily MFS_1	K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D      Dole_2623 major facilitator superfamily MFS_1	K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D      Dole_2676 major facilitator superfamily MFS_1	K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D      Dole_0377 major facilitator superfamily MFS_1	K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D      Dole_2698 phosphoenolpyruvate-protein phosphotransferase	K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D      Dole_2699 Phosphotransferase system, phosphocarrier protein HPr	K02784 ptsH; phosphocarrier protein HPr
D      Dole_0502 PTS system fructose subfamily IIA component	K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D      Dole_0504 putative PTS IIA-like nitrogen-regulatory protein PtsN	K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D      Dole_2109 putative PTS IIA-like nitrogen-regulatory protein PtsN	K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D      Dole_2743 TrkA-N domain protein	K10716 kch; voltage-gated potassium channel
D      Dole_0565 ammonium transporter	K03320 amt; ammonium transporter, Amt family
D      Dole_0566 ammonium transporter	K03320 amt; ammonium transporter, Amt family
D      Dole_0551 ammonium transporter	K03320 amt; ammonium transporter, Amt family
D      Dole_0884 response regulator receiver protein	K21993 fdhC; formate transporter
D      Dole_3013 MscS Mechanosensitive ion channel	K05802 mscK; potassium-dependent mechanosensitive channel
D      Dole_2296 MscS Mechanosensitive ion channel	K03442 mscS; small conductance mechanosensitive channel
D      Dole_3016 MscS Mechanosensitive ion channel	K16052 ynaI; MscS family membrane protein
D      Dole_1640 MscS Mechanosensitive ion channel	K16053 ybdG; miniconductance mechanosensitive channel
D      Dole_0412 magnesium transporter	K06213 mgtE; magnesium transporter
D      Dole_0417 magnesium transporter	K06213 mgtE; magnesium transporter
D      Dole_1738 MotA/TolQ/ExbB proton channel	K03561 exbB; biopolymer transport protein ExbB
D      Dole_1737 MotA/TolQ/ExbB proton channel	K03561 exbB; biopolymer transport protein ExbB
D      Dole_1235 conserved hypothetical protein	K03561 exbB; biopolymer transport protein ExbB
D      Dole_1736 Biopolymer transport protein ExbD/TolR	K03559 exbD; biopolymer transport protein ExbD
D      Dole_2213 Tol-Pal system TolQ	K03562 tolQ; biopolymer transport protein TolQ
D      Dole_2212 Biopolymer transport TolR	K03560 tolR; biopolymer transport protein TolR
D      Dole_3012 magnesium and cobalt transport protein CorA	K03284 corA; magnesium transporter
D      Dole_2979 CrcB protein	K06199 crcB; fluoride exporter
D      Dole_2054 protein of unknown function DUF21	K03699 tlyC; magnesium and cobalt exporter, CNNM family
D      Dole_0859 CBS domain containing protein	K03699 tlyC; magnesium and cobalt exporter, CNNM family
D      Dole_1995 OmpA/MotB domain protein	K03286 TC.OOP; OmpA-OmpF porin, OOP family
D      Dole_1859 TonB-dependent receptor plug	K16092 btuB; vitamin B12 transporter
D      Dole_0611 type I secretion outer membrane protein, TolC family	K12340 tolC; outer membrane protein
D      Dole_1217 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_1629 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_2896 RND efflux system, outer membrane lipoprotein, NodT family	K18139 oprM; outer membrane protein, multidrug efflux system
D      Dole_1658 polysaccharide export protein	K01991 wza; polysaccharide biosynthesis/export protein
D      Dole_2844 surface antigen (D15)	K07277 SAM50; outer membrane protein insertion porin family
D      Dole_2055 DNA uptake lipoprotein-like protein	K05807 bamD; outer membrane protein assembly factor BamD
D      Dole_0508 OstA family protein	K09774 lptA; lipopolysaccharide export system protein LptA
D      Dole_0509 protein of unknown function DUF1239	K11719 lptC; lipopolysaccharide export system protein LptC
D      Dole_3208 Organic solvent tolerance protein	K04744 lptD; LPS-assembly protein
D      Dole_2884 cation diffusion facilitator family transporter	K16264 czcD; cobalt-zinc-cadmium efflux system protein
D      Dole_0856 zinc/iron permease	K07238 TC.ZIP; zinc transporter, ZIP family
D      Dole_0428 peptidoglycan-binding LysM	K07238 TC.ZIP; zinc transporter, ZIP family
D      Dole_2895 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family	K18138 acrB; multidrug efflux pump
D      Dole_1215 acriflavin resistance protein	K18989 vexF; multidrug efflux pump
D      Dole_0191 hypothetical protein	K03297 emrE; small multidrug resistance pump
D      Dole_2531 protein of unknown function DUF6 transmembrane	K08978 TC.BAT1; bacterial/archaeal transporter family protein
D      Dole_0855 sodium/hydrogen exchanger	K26735 KEA4_5_6; K+:H+ antiporter
D      Dole_3217 potassium uptake protein, TrkH family	K03498 trkH; trk/ktr system potassium uptake protein
D      Dole_1370 cation transporter	K03498 trkH; trk/ktr system potassium uptake protein
D      Dole_3218 TrkA-N domain protein	K03499 trkA; trk/ktr system potassium uptake protein
D      Dole_3169 Xanthine/uracil/vitamin C permease	K06901 pbuG; adenine/guanine/hypoxanthine permease
D      Dole_2446 Chloride channel core	K03281 clcA; chloride channel protein, CIC family
D      Dole_3181 Chloride channel core	K03281 clcA; chloride channel protein, CIC family
D      Dole_2336 sulfate transporter	K03321 TC.SULP; sulfate permease, SulP family
D      Dole_3076 Tripartite ATP-independent periplasmic transporter DctQ component	K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D      Dole_3075 TRAP dicarboxylate transporter, DctM subunit	K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D      Dole_3155 TRAP dicarboxylate transporter, DctM subunit	K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D      Dole_3074 TRAP dicarboxylate transporter-DctP subunit	K21395 yiaO; TRAP-type transport system periplasmic protein
D      Dole_3078 TRAP dicarboxylate transporter-DctP subunit	K21395 yiaO; TRAP-type transport system periplasmic protein
D      Dole_3104 TRAP dicarboxylate transporter-DctP subunit	K21395 yiaO; TRAP-type transport system periplasmic protein
D      Dole_3157 TRAP dicarboxylate transporter-DctP subunit	K21395 yiaO; TRAP-type transport system periplasmic protein
D      Dole_3168 TRAP dicarboxylate transporter-DctP subunit	K21395 yiaO; TRAP-type transport system periplasmic protein
D      Dole_2003 TRAP dicarboxylate transporter-DctP subunit	K21395 yiaO; TRAP-type transport system periplasmic protein
D      Dole_2381 Na/Pi-cotransporter II-related protein	K03324 yjbB; phosphate:Na+ symporter
D      Dole_2882 arsenical-resistance protein	K03325 ACR3; arsenite transporter
D      Dole_1988 low molecular weight phosphotyrosine protein phosphatase	K03325 ACR3; arsenite transporter
D      Dole_2327 integral membrane protein MviN	K03980 murJ; putative peptidoglycan lipid II flippase
D      Dole_2300 protein of unknown function DUF112 transmembrane	K07793 tctA; putative tricarboxylic transport membrane protein
D      Dole_2301 conserved hypothetical protein	K07795 tctC; putative tricarboxylic transport membrane protein
D      Dole_2006 protein of unknown function UPF0118	K03548 perM; putative permease
D      Dole_3095 multiple antibiotic resistance (MarC)-related protein	K05595 marC; multiple antibiotic resistance protein
D      Dole_2788 cell division protein FtsW	K03588 ftsW; cell division protein FtsW
D      Dole_1255 hypothetical protein	K15383 K15383; MtN3 and saliva related transmembrane protein
D      Dole_2942 conserved hypothetical protein	K15383 K15383; MtN3 and saliva related transmembrane protein
D      Dole_1735 TonB family protein	K03832 tonB; periplasmic protein TonB
D      Dole_2209 Peptidoglycan-associated lipoprotein	K03640 pal; peptidoglycan-associated lipoprotein
D      Dole_2211 TonB family protein	K03646 tolA; colicin import membrane protein
D      Dole_2210 Tol-Pal system beta propeller repeat TolB	K03641 tolB; TolB protein
D      Dole_2820 V-type H(+)-translocating pyrophosphatase	K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D      Dole_2282 sodium ion-translocating decarboxylase, beta subunit	K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D      Dole_0077 carboxyl transferase	K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D      Dole_2887 cytochrome c biogenesis protein transmembrane region	K06196 ccdA; cytochrome c-type biogenesis protein
D      Dole_0130 cytochrome c biogenesis protein transmembrane region	K06196 ccdA; cytochrome c-type biogenesis protein
D      Dole_0126 Formate dehydrogenase	K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D      Dole_2548 4Fe-4S ferredoxin iron-sulfur binding domain protein	K23301 qrcC; menaquinone reductase, iron-sulfur cluster-binding subunit [EC:1.97.-.-]
D      Dole_2547 molybdopterin oxidoreductase	K23302 qrcB; menaquinone reductase, molybdopterin-binding-like subunit
D      Dole_2549 Polysulphide reductase NrfD	K23303 qrcD; menaquinone reductase, integral membrane subunit
D      Dole_0194 molybdopterin oxidoreductase	K24713 s25dA; steroid C-25 hydroxylase alpha subunit [EC:1.17.99.10]
D      Dole_0196 4Fe-4S ferredoxin iron-sulfur binding domain protein	K24714 s25dB; steroid C-25 hydroxylase beta subunit [EC:1.17.99.10]
D      Dole_0195 gamma-subunit of ethylbenzene dehydrogenase	K24715 s25dC; steroid C-25 hydroxylase gamma subunit
D      Dole_2894 efflux transporter, RND family, MFP subunit	K03585 acrA; membrane fusion protein, multidrug efflux system
D      Dole_0621 secretion protein HlyD	K03585 acrA; membrane fusion protein, multidrug efflux system
D      Dole_1216 efflux transporter, RND family, MFP subunit	K18990 vexE; membrane fusion protein, multidrug efflux system
D      Dole_1628 efflux transporter, RND family, MFP subunit	K13888 macA; membrane fusion protein, macrolide-specific efflux system
D      Dole_1657 Non-specific protein-tyrosine kinase	K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D      Dole_0343 FeoA family protein	K04758 feoA; ferrous iron transport protein A
D      Dole_0344 ferrous iron transport protein B	K04759 feoB; ferrous iron transport protein B
C    02044 Secretion system [BR:dol02044]
D      Dole_0611 type I secretion outer membrane protein, TolC family	K12340 tolC; outer membrane protein
D      Dole_1217 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_1629 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_1040 PDZ/DHR/GLGF domain protein	K02452 gspC; general secretion pathway protein C
D      Dole_1041 general secretion pathway protein D	K02453 gspD; general secretion pathway protein D
D      Dole_0536 type II secretion system protein E	K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D      Dole_1042 general secretory pathway protein E	K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D      Dole_1045 general secretion pathway protein F	K02455 gspF; general secretion pathway protein F
D      Dole_1032 general secretion pathway protein G	K02456 gspG; general secretion pathway protein G
D      Dole_1034 hypothetical protein	K02458 gspI; general secretion pathway protein I
D      Dole_1035 hypothetical protein	K02459 gspJ; general secretion pathway protein J
D      Dole_1036 Type II secretory pathway component PulK-like protein	K02460 gspK; general secretion pathway protein K
D      Dole_1037 Fimbrial assembly family protein	K02461 gspL; general secretion pathway protein L
D      Dole_1038 hypothetical protein	K02462 gspM; general secretion pathway protein M
D      Dole_1855 peptidase A24A domain protein	K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D      Dole_0517 tfp pilus assembly protein, major pilin	K02650 pilA; type IV pilus assembly protein PilA
D      Dole_1408 type II secretion system protein E	K02652 pilB; type IV pilus assembly protein PilB
D      Dole_2849 type II secretion system protein	K02653 pilC; type IV pilus assembly protein PilC
D      Dole_0333 type IV pilus assembly protein PilM	K02662 pilM; type IV pilus assembly protein PilM
D      Dole_0332 Fimbrial assembly family protein	K02663 pilN; type IV pilus assembly protein PilN
D      Dole_0331 Pilus assembly protein PilO	K02664 pilO; type IV pilus assembly protein PilO
D      Dole_1406 type II and III secretion system protein	K02666 pilQ; type IV pilus assembly protein PilQ
D      Dole_0329 type IV pilus secretin PilQ	K02666 pilQ; type IV pilus assembly protein PilQ
D      Dole_3052 twitching motility protein	K02669 pilT; twitching motility protein PilT
D      Dole_3053 twitching motility protein	K02669 pilT; twitching motility protein PilT
D      Dole_0488 conserved hypothetical protein	K02671 pilV; type IV pilus assembly protein PilV
D      Dole_0487 Tfp pilus assembly protein PilW-like protein	K02672 pilW; type IV pilus assembly protein PilW
D      Dole_0489 hypothetical protein	K02673 pilX; type IV pilus assembly protein PilX
D      Dole_0490 Pyrrolo-quinoline quinone	K02674 pilY1; type IV pilus assembly protein PilY1
D      Dole_0486 pilin assembly protein	K08084 fimT; type IV fimbrial biogenesis protein FimT
D      Dole_3054 protein of unknown function YGGT	K02221 yggT; YggT family protein
D      Dole_1008 competence protein ComEA helix-hairpin-helix repeat protein	K02237 comEA; competence protein ComEA
D      Dole_2081 CMP/dCMP deaminase zinc-binding	K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D      Dole_0767 DNA internalization-related competence protein ComEC/Rec2	K02238 comEC; competence protein ComEC
D      Dole_0620 SecA DEAD domain protein	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      Dole_2483 preprotein translocase, SecA subunit	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      Dole_2442 protein-export membrane protein SecD	K03072 secD; preprotein translocase subunit SecD
D      Dole_0696 preprotein translocase, SecE subunit	K03073 secE; preprotein translocase subunit SecE
D      Dole_2443 protein-export membrane protein SecF	K03074 secF; preprotein translocase subunit SecF
D      Dole_0498 preprotein translocase, SecG subunit	K03075 secG; preprotein translocase subunit SecG
D      Dole_0728 preprotein translocase, SecY subunit	K03076 secY; preprotein translocase subunit SecY
D      Dole_2310 signal recognition particle protein	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D      Dole_1718 signal recognition particle-docking protein FtsY	K03110 ftsY; fused signal recognition particle receptor
D      Dole_2441 preprotein translocase, YajC subunit	K03210 yajC; preprotein translocase subunit YajC
D      Dole_0102 60 kDa inner membrane insertion protein	K03217 yidC; YidC/Oxa1 family membrane protein insertase
D      Dole_0188 twin-arginine translocation protein, TatA/E family subunit	K03116 tatA; sec-independent protein translocase protein TatA
D      Dole_0045 twin-arginine translocation protein, TatA/E family subunit	K03116 tatA; sec-independent protein translocase protein TatA
D      Dole_3172 twin-arginine translocation protein, TatA/E family subunit	K03117 tatB; sec-independent protein translocase protein TatB
D      Dole_3171 Sec-independent protein translocase, TatC subunit	K03118 tatC; sec-independent protein translocase protein TatC
C    02042 Bacterial toxins [BR:dol02042]
D      Dole_2054 protein of unknown function DUF21	K03699 tlyC; magnesium and cobalt exporter, CNNM family
D      Dole_0859 CBS domain containing protein	K03699 tlyC; magnesium and cobalt exporter, CNNM family
C    02022 Two-component system [BR:dol02022]
D      Dole_1931 PAS/PAC sensor signal transduction histidine kinase	K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D      Dole_1930 two component transcriptional regulator, winged helix family	K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D      Dole_1149 response regulator receiver protein	K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D      Dole_0622 two component transcriptional regulator, winged helix family	K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D      Dole_2810 response regulator receiver protein	K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D      Dole_0223 response regulator receiver protein	K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D      Dole_1351 response regulator receiver protein	K02483 K02483; two-component system, OmpR family, response regulator
D      Dole_2331 response regulator receiver protein	K02483 K02483; two-component system, OmpR family, response regulator
D      Dole_2738 PAS/PAC sensor signal transduction histidine kinase	K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D      Dole_2739 putative two component, sigma54 specific, transcriptional regulator, Fis family	K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D      Dole_0426 signal transduction histidine kinase, nitrogen specific, NtrB	K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D      Dole_2808 PAS/PAC sensor signal transduction histidine kinase	K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D      Dole_0427 two component, sigma54 specific, transcriptional regulator, Fis family	K07713 zraR; two-component system, NtrC family, response regulator HydG
D      Dole_2807 two component, sigma54 specific, transcriptional regulator, Fis family	K07713 zraR; two-component system, NtrC family, response regulator HydG
D      Dole_3068 PAS modulated sigma54 specific transcriptional regulator, Fis family	K07713 zraR; two-component system, NtrC family, response regulator HydG
D      Dole_1777 two component, sigma54 specific, transcriptional regulator, Fis family	K07714 atoC; two-component system, NtrC family, response regulator AtoC
D      Dole_2401 two component, sigma54 specific, transcriptional regulator, Fis family	K07714 atoC; two-component system, NtrC family, response regulator AtoC
D      Dole_0516 two component, sigma54 specific, transcriptional regulator, Fis family	K02667 pilR; two-component system, NtrC family, response regulator PilR
D      Dole_1356 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_1349 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_2334 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_0888 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_1650 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_1776 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_1344 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_1360 response regulator receiver sensor signal transduction histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_3258 PAS/PAC sensor signal transduction histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_2127 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_2392 histidine kinase	K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D      Dole_3262 two component, sigma54 specific, transcriptional regulator, Fis family	K02481 flgR; two-component system, NtrC family, response regulator
D      Dole_0871 CheA signal transduction histidine kinase	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      Dole_0990 CheA signal transduction histidine kinase	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      Dole_0876 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_0880 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_1059 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_0878 response regulator receiver modulated CheB methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      Dole_0988 response regulator receiver modulated CheB methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      Dole_3271 response regulator receiver protein	K11443 divK; two-component system, cell cycle response regulator DivK
D      Dole_3256 PAS/PAC sensor hybrid histidine kinase	K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D      Dole_2700 PAS/PAC sensor hybrid histidine kinase	K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D      Dole_0139 Hpt protein	K20976 hptB; histidine phosphotransfer protein HptB
D      Dole_0913 response regulator receiver protein	K22010 pdtaR; two-component system, response regulator PdtaR
D      Dole_2264 putative GAF sensor protein	K22010 pdtaR; two-component system, response regulator PdtaR
D      Dole_1682 methyl-accepting chemotaxis sensory transducer	K20971 ladS; two-component system, sensor histidine kinase LadS
C    02035 Bacterial motility proteins [BR:dol02035]
D      Dole_0871 CheA signal transduction histidine kinase	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      Dole_0990 CheA signal transduction histidine kinase	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      Dole_0874 CheW protein	K03408 cheW; purine-binding chemotaxis protein CheW
D      Dole_0989 CheW protein	K03408 cheW; purine-binding chemotaxis protein CheW
D      Dole_1058 CheC, inhibitor of MCP methylation	K03410 cheC; chemotaxis protein CheC
D      Dole_0877 CheD	K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D      Dole_0875 MCP methyltransferase, CheR-type	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      Dole_0987 MCP methyltransferase, CheR-type	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      Dole_2313 transcriptional regulator, Fis family	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      Dole_0878 response regulator receiver modulated CheB methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      Dole_0988 response regulator receiver modulated CheB methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      Dole_0876 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_0880 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_1059 response regulator receiver protein	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      Dole_0205 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_0648 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_0872 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_1751 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_2000 methyl-accepting chemotaxis sensory transducer	K03406 mcp; methyl-accepting chemotaxis protein
D      Dole_0516 two component, sigma54 specific, transcriptional regulator, Fis family	K02667 pilR; two-component system, NtrC family, response regulator PilR
D      Dole_3052 twitching motility protein	K02669 pilT; twitching motility protein PilT
D      Dole_3053 twitching motility protein	K02669 pilT; twitching motility protein PilT
D      Dole_0517 tfp pilus assembly protein, major pilin	K02650 pilA; type IV pilus assembly protein PilA
D      Dole_1408 type II secretion system protein E	K02652 pilB; type IV pilus assembly protein PilB
D      Dole_2849 type II secretion system protein	K02653 pilC; type IV pilus assembly protein PilC
D      Dole_1855 peptidase A24A domain protein	K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D      Dole_1406 type II and III secretion system protein	K02666 pilQ; type IV pilus assembly protein PilQ
D      Dole_0329 type IV pilus secretin PilQ	K02666 pilQ; type IV pilus assembly protein PilQ
D      Dole_0331 Pilus assembly protein PilO	K02664 pilO; type IV pilus assembly protein PilO
D      Dole_0332 Fimbrial assembly family protein	K02663 pilN; type IV pilus assembly protein PilN
D      Dole_0333 type IV pilus assembly protein PilM	K02662 pilM; type IV pilus assembly protein PilM
D      Dole_0488 conserved hypothetical protein	K02671 pilV; type IV pilus assembly protein PilV
D      Dole_0487 Tfp pilus assembly protein PilW-like protein	K02672 pilW; type IV pilus assembly protein PilW
D      Dole_0489 hypothetical protein	K02673 pilX; type IV pilus assembly protein PilX
D      Dole_0490 Pyrrolo-quinoline quinone	K02674 pilY1; type IV pilus assembly protein PilY1
C    03037 Cilium and associated proteins
C    04812 Cytoskeleton proteins [BR:dol04812]
D      Dole_2429 protein of unknown function DUF52	K06990 MEMO1; MEMO1 family protein
D      Dole_0299 protein of unknown function DUF52	K06990 MEMO1; MEMO1 family protein
D      Dole_0592 cell shape determining protein, MreB/Mrl family	K03569 mreB; rod shape-determining protein MreB and related proteins
D      Dole_2782 cell division protein FtsZ	K03531 ftsZ; cell division protein FtsZ
D      Dole_0253 Cell division GTPase-like protein	K03531 ftsZ; cell division protein FtsZ
D      Dole_0255 Tubulin/FtsZ GTPase	K03531 ftsZ; cell division protein FtsZ
D      Dole_2783 cell division protein FtsA	K03590 ftsA; cell division protein FtsA
D      Dole_1631 Cobyrinic acid ac-diamide synthase	K03496 parA; chromosome partitioning protein
D      Dole_1576 Cobyrinic acid ac-diamide synthase	K03496 parA; chromosome partitioning protein
D      Dole_1269 Cobyrinic acid ac-diamide synthase	K03496 parA; chromosome partitioning protein
D      Dole_2598 Cobyrinic acid ac-diamide synthase	K03496 parA; chromosome partitioning protein
D      Dole_1632 parB-like partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D      Dole_2368 ParB domain protein nuclease	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C    04147 Exosome [BR:dol04147]
D      Dole_2214 heat shock protein Hsp90	K04079 HSP90A; molecular chaperone HtpG
D      Dole_0339 Phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      Dole_0500 glyceraldehyde-3-phosphate dehydrogenase, type I	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      Dole_0222 Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      Dole_0677 Phosphoglycerate kinase	K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D      Dole_2125 pyruvate kinase	K00873 PK; pyruvate kinase [EC:2.7.1.40]
D      Dole_1083 hypothetical protein	K12483 EHD1; EH domain-containing protein 1
D      Dole_0550 chaperonin GroEL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D      Dole_0070 chaperone protein DnaK	K04043 dnaK; molecular chaperone DnaK
D      Dole_2982 Heat shock protein 70	K04043 dnaK; molecular chaperone DnaK
D      Dole_1849 Glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      Dole_1886 inosine-5'-monophosphate dehydrogenase	K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D      Dole_0695 translation elongation factor Tu	K02358 tuf; elongation factor Tu
D      Dole_0706 translation elongation factor Tu	K02358 tuf; elongation factor Tu
D      Dole_2448 histidine triad (HIT) protein	K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D      Dole_3006 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0337 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0314 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0164 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_1204 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_0225 AMP-dependent synthetase and ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      Dole_2160 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1476 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_2187 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0671 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1778 acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1551 Propanoyl-CoA C-acyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_1601 Acetyl-CoA acetyltransferase-like protein	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      Dole_0357 adenosylhomocysteinase	K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D      Dole_0469 adenylate kinase	K00939 adk; adenylate kinase [EC:2.7.4.3]
D      Dole_1146 Adenylate kinase and related kinase-like protein	K00939 adk; adenylate kinase [EC:2.7.4.3]
D      Dole_2619 adenine phosphoribosyltransferase	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      Dole_2490 argininosuccinate lyase	K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D      Dole_2491 Argininosuccinate synthase	K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D      Dole_0847 alpha amylase all-beta	K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D      Dole_1395 glycerol kinase	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      Dole_2273 glutamine synthetase, type I	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_2272 glutamine synthetase catalytic region	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      Dole_1224 Porphobilinogen synthase	K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D      Dole_2852 D-3-phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      Dole_2813 D-3-phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      Dole_1516 Phosphoribosylaminoimidazolecarboxamide formyltransferase	K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D      Dole_0495 Ste24 endopeptidase	K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D      Dole_1419 Electron transfer flavoprotein alpha subunit	K03522 fixB; electron transfer flavoprotein alpha subunit
D      Dole_1924 Electron transfer flavoprotein alpha subunit	K03522 fixB; electron transfer flavoprotein alpha subunit
D      Dole_0499 Triose-phosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D      Dole_1202 Lipocalin family protein	K03098 APOD; apolipoprotein D and lipocalin family protein
C    02048 Prokaryotic defense system [BR:dol02048]
D      Dole_2989 CRISPR-associated protein Cas1	K15342 cas1; CRISP-associated protein Cas1
D      Dole_2990 CRISPR-associated protein Cas2	K09951 cas2; CRISPR-associated protein Cas2
D      Dole_2983 CRISPR-associated helicase Cas3	K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D      Dole_2984 CRISPR-associated protein, Cse1 family	K19123 casA; CRISPR system Cascade subunit CasA
D      Dole_2985 CRISPR-associated protein, Cse2 family	K19046 casB; CRISPR system Cascade subunit CasB
D      Dole_2986 CRISPR-associated protein, Cse4 family	K19124 casC; CRISPR system Cascade subunit CasC
D      Dole_2987 CRISPR-associated protein Cas5 family	K19125 casD; CRISPR system Cascade subunit CasD
D      Dole_2988 CRISPR-associated protein, Cse3 family	K19126 casE; CRISPR system Cascade subunit CasE
D      Dole_0744 CRISPR-associated protein, Csm1 family	K07016 csm1; CRISPR-associated protein Csm1
D      Dole_0743 CRISPR-associated protein, Csm2 family	K19138 csm2; CRISPR-associated protein Csm2
D      Dole_0742 CRISPR-associated RAMP protein, Csm3 family	K09002 csm3; CRISPR-associated protein Csm3
D      Dole_0741 protein predicted to be involved in DNA repair (RAMP superfamily)-like protein	K19139 csm4; CRISPR-associated protein Csm4
D      Dole_0740 CRISPR-associated RAMP protein, Csm5 family	K19140 csm5; CRISPR-associated protein Csm5
D      Dole_0824 EcoEI R domain protein	K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D      Dole_2239 type I site-specific deoxyribonuclease, HsdR family	K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D      Dole_0278 protein of unknown function DUF450	K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D      Dole_2927 type I site-specific deoxyribonuclease, HsdR family	K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D      Dole_2096 type III restriction protein res subunit	K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D      Dole_2724 type III restriction protein res subunit	K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D      Dole_0245 type I site-specific deoxyribonuclease, HsdR family	K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D      Dole_1258 type III restriction protein res subunit	K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D      Dole_0277 restriction modification system DNA specificity domain	K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D      Dole_2237 restriction modification system DNA specificity domain	K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D      Dole_0249 restriction modification system DNA specificity domain	K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D      Dole_2726 restriction modification system DNA specificity domain	K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D      Dole_2926 restriction modification system DNA specificity domain	K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D      Dole_1260 restriction modification system DNA specificity domain	K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D      Dole_2093 restriction modification system DNA specificity domain	K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D      Dole_0822 restriction modification system DNA specificity domain	K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D      Dole_2236 N-6 DNA methylase	K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D      Dole_0276 N-6 DNA methylase	K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D      Dole_2925 N-6 DNA methylase	K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D      Dole_0251 type I restriction-modification system, M subunit	K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D      Dole_1259 N-6 DNA methylase	K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D      Dole_2095 N-6 DNA methylase	K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D      Dole_2725 N-6 DNA methylase	K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D      Dole_0823 N-6 DNA methylase	K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D      Dole_0821 DNA adenine methylase	K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D      Dole_3090 site-specific DNA-methyltransferase	K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D      Dole_0939 DNA methylase N-4/N-6 domain protein	K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D      Dole_0919 HNH endonuclease	K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D      Dole_0825 conserved hypothetical protein	K07448 mrr; restriction system protein
D      Dole_2605 transcriptional modulator of MazE/toxin, MazF	K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D      Dole_1697 transcriptional regulator, AbrB family	K19156 prlF; antitoxin PrlF
D      Dole_1817 addiction module toxin, RelE/StbE family	K06218 relE; mRNA interferase RelE/StbE
D      Dole_1700 addiction module toxin, Txe/YoeB family	K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D      Dole_2607 addiction module toxin, Txe/YoeB family	K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D      Dole_2606 prevent-host-death family protein	K19159 yefM; antitoxin YefM
D      Dole_2120 prevent-host-death family protein	K19159 yefM; antitoxin YefM
D      Dole_2637 HipA domain protein	K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D      Dole_0896 HipA domain protein	K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D      Dole_2119 plasmid stabilization system	K19092 parE1_3_4; toxin ParE1/3/4
D      Dole_1386 plasmid maintenance system killer	K07334 higB-1; toxin HigB-1
D      Dole_2890 plasmid maintenance system killer	K07334 higB-1; toxin HigB-1
D      Dole_1385 plasmid maintenance system antidote protein, XRE family	K21498 higA-1; antitoxin HigA-1
D      Dole_2889 plasmid maintenance system antidote protein, XRE family	K21498 higA-1; antitoxin HigA-1
D      Dole_2564 plasmid maintenance system antidote protein, XRE family	K21498 higA-1; antitoxin HigA-1
D      Dole_2782 cell division protein FtsZ	K03531 ftsZ; cell division protein FtsZ
D      Dole_0253 Cell division GTPase-like protein	K03531 ftsZ; cell division protein FtsZ
D      Dole_0255 Tubulin/FtsZ GTPase	K03531 ftsZ; cell division protein FtsZ
D      Dole_0592 cell shape determining protein, MreB/Mrl family	K03569 mreB; rod shape-determining protein MreB and related proteins
D      Dole_2533 glutamyl-tRNA synthetase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      Dole_2243 aminotransferase class V	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      Dole_0756 aminotransferase class V	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C    04030 G protein-coupled receptors
C    04050 Cytokine receptors
C    04054 Pattern recognition receptors
C    03310 Nuclear receptors
C    04040 Ion channels
C    04031 GTP-binding proteins
C    04052 Cytokines and neuropeptides
C    04515 Cell adhesion molecules
C    04090 CD molecules [BR:dol04090]
C    01504 Antimicrobial resistance genes [BR:dol01504]
D      Dole_2894 efflux transporter, RND family, MFP subunit	K03585 acrA; membrane fusion protein, multidrug efflux system
D      Dole_0621 secretion protein HlyD	K03585 acrA; membrane fusion protein, multidrug efflux system
D      Dole_2895 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family	K18138 acrB; multidrug efflux pump
D      Dole_2896 RND efflux system, outer membrane lipoprotein, NodT family	K18139 oprM; outer membrane protein, multidrug efflux system
D      Dole_0611 type I secretion outer membrane protein, TolC family	K12340 tolC; outer membrane protein
D      Dole_1217 outer membrane efflux protein	K12340 tolC; outer membrane protein
D      Dole_1629 outer membrane efflux protein	K12340 tolC; outer membrane protein
C    00535 Proteoglycans
C    00536 Glycosaminoglycan binding proteins
C    00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C    04091 Lectins
C    04990 Domain-containing proteins not elsewhere classified
B
B  09185 Viral protein families
C    03200 Viral proteins
C    03210 Viral fusion proteins
B
B  09184 RNA family
C    03100 Non-coding RNAs [BR:dol03100]
D      Dole_R0047 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      Dole_R0013 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      Dole_R0034 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      Dole_R0038 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      Dole_R0023 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      Dole_R0049 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      Dole_R0016 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      Dole_R0007 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      Dole_R0004 tRNA-Asn	K14220 tRNA-Asn; tRNA Asn
D      Dole_R0043 tRNA-Asp	K14221 tRNA-Asp; tRNA Asp
D      Dole_R0030 tRNA-Cys	K14222 tRNA-Cys; tRNA Cys
D      Dole_R0046 tRNA-Gln	K14223 tRNA-Gln; tRNA Gln
D      Dole_R0039 tRNA-Gln	K14223 tRNA-Gln; tRNA Gln
D      Dole_R0052 tRNA-Glu	K14224 tRNA-Glu; tRNA Glu
D      Dole_R0044 tRNA-Glu	K14224 tRNA-Glu; tRNA Glu
D      Dole_R0031 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      Dole_R0048 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      Dole_R0019 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      Dole_R0050 tRNA-His	K14226 tRNA-His; tRNA His
D      Dole_R0012 tRNA-Ile	K14227 tRNA-Ile; tRNA Ile
D      Dole_R0025 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      Dole_R0022 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      Dole_R0036 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      Dole_R0008 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      Dole_R0041 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      Dole_R0053 tRNA-Lys	K14229 tRNA-Lys; tRNA Lys
D      Dole_R0037 tRNA-Lys	K14229 tRNA-Lys; tRNA Lys
D      Dole_R0024 tRNA-Met	K14230 tRNA-Met; tRNA Met
D      Dole_R0005 tRNA-Met	K14230 tRNA-Met; tRNA Met
D      Dole_R0033 tRNA-Met	K14230 tRNA-Met; tRNA Met
D      Dole_R0027 tRNA-Phe	K14231 tRNA-Phe; tRNA Phe
D      Dole_R0051 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      Dole_R0040 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      Dole_R0029 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      Dole_R0009 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      Dole_R0010 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      Dole_R0002 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      Dole_R0003 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      Dole_R0020 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      Dole_R0017 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      Dole_R0026 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      Dole_R0021 tRNA-Trp	K14235 tRNA-Trp; tRNA Trp
D      Dole_R0018 tRNA-Tyr	K14236 tRNA-Tyr; tRNA Tyr
D      Dole_R0045 tRNA-Val	K14237 tRNA-Val; tRNA Val
D      Dole_R0042 tRNA-Val	K14237 tRNA-Val; tRNA Val
D      Dole_R0028 tRNA-Val	K14237 tRNA-Val; tRNA Val
D      Dole_R0035 tRNA-Sec	K14238 tRNA-Sec; tRNA Sec
D      Dole_R0011 16S ribosomal RNA	K01977 16SrRNA; 16S ribosomal RNA
D      Dole_R0014 23S ribosomal RNA	K01980 23SrRNA; 23S ribosomal RNA
D      Dole_R0015 5S ribosomal RNA	K01985 5SrRNA; 5S ribosomal RNA
D      Dole_R0001 ffs; SRP RNA; RNA component of signal recognition particle	K01983 ffs; SRP RNA
D      Dole_R0032 RNA component of RNaseP	K01978 rnpB; M1 RNA
D      Dole_R0006 tmRNA as predicted by Rfam (RF00023), score 196.18	K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B  09191 Unclassified: metabolism
C    99980 Enzymes with EC numbers
D      Dole_2011 3-beta hydroxysteroid dehydrogenase/isomerase	K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D      Dole_2608 3-beta hydroxysteroid dehydrogenase/isomerase	K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D      Dole_0982 aldehyde dehydrogenase	K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D      Dole_0440 thiamine pyrophosphate protein domain protein TPP-binding	K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D      Dole_0441 Indolepyruvate ferredoxin oxidoreductase	K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D      Dole_2181 acyl-CoA dehydrogenase domain protein	K18244 mmgC; acyl-CoA dehydrogenase [EC:1.3.99.-]
D      Dole_2904 Acyl-CoA dehydrogenase type 2 domain	K18244 mmgC; acyl-CoA dehydrogenase [EC:1.3.99.-]
D      Dole_1182 2-nitropropane dioxygenase NPD	K23948 E1.6.5.9; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D      Dole_1541 methionine-R-sulfoxide reductase	K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D      Dole_1589 alpha/beta hydrolase fold	K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D      Dole_0841 Redoxin domain protein	K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D      Dole_2870 desulfoferrodoxin	K05919 dfx; superoxide reductase [EC:1.15.1.2]
D      Dole_0316 oxidoreductase FAD/NAD(P)-binding domain protein	K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D      Dole_2881 protein tyrosine phosphatase	K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D      Dole_1988 low molecular weight phosphotyrosine protein phosphatase	K03325 ACR3; arsenite transporter
D      Dole_1524 Radical SAM domain protein	K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D      Dole_2569 anaerobic ribonucleoside-triphosphate reductase activating protein	K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D      Dole_2192 glycyl-radical enzyme activating protein family	K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D      Dole_2431 Radical SAM domain protein	K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D      Dole_2121 Radical SAM domain protein	K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D      Dole_2546 conserved hypothetical protein	K23300 qrcA; menaquinone reductase, multiheme cytochrome c subunit [EC:1.97.-.-]
D      Dole_2742 protein-L-isoaspartate O-methyltransferase	K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D      Dole_0349 Cyclopropane-fatty-acyl-phospholipid synthase	K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D      Dole_0911 Tellurite resistance protein TehB	K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D      Dole_2587 conserved hypothetical protein	K24288 meT1; MMP 1-O-methyltransferase [EC:2.1.1.365]
D      Dole_0978 Carbamoyltransferase	K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D      Dole_1768 apolipoprotein N-acyltransferase	K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D      Dole_0358 apolipoprotein N-acyltransferase	K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D      Dole_3128 apolipoprotein N-acyltransferase	K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D      Dole_2480 Leucyltransferase	K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D      Dole_2008 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein	K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]
D      Dole_1248 alpha amylase catalytic region	K22597 E2.4.1.352; glucosylglycerate phosphorylase [EC:2.4.1.352]
D      Dole_0969 conserved hypothetical protein	K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D      Dole_1189 prolipoprotein diacylglyceryl transferase	K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D      Dole_1412 prolipoprotein diacylglyceryl transferase	K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D      Dole_3233 ApbE family lipoprotein	K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D      Dole_1758 ApbE family lipoprotein	K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D      Dole_1081 diguanylate cyclase	K18967 dge1; diguanylate cyclase [EC:2.7.7.65]
D      Dole_0668 Appr-1-p processing domain protein	K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D      Dole_1141 Carboxylesterase type B	K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D      Dole_1656 Protein-tyrosine-phosphatase	K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D      Dole_1503 PHP domain protein	K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D      Dole_1580 protein of unknown function DUF89	K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-]
D      Dole_0778 metal dependent phosphohydrolase	K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D      Dole_1136 response regulator receiver modulated metal dependent phosphohydrolase	K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D      Dole_1870 beta-lactamase domain protein	K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21]
D      Dole_0315 hydrolase, TatD family	K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D      Dole_2932 nuclease (SNase domain protein)	K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D      Dole_3220 conserved hypothetical protein	K27194 mmpH; MMP endo-(1,4)-3-O-methyl-alpha-D-mannosidase [EC:3.2.1.221]
D      Dole_0956 conserved hypothetical protein	K27494 exoMA1; D-arabinan exo alpha-(1,3)/(1,5)-arabinofuranosidase (non-reducing end) [EC:3.2.1.225]
D      Dole_1900 D-aminoacylase domain protein	K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D      Dole_2233 peptide deformylase	K01462 PDF; peptide deformylase [EC:3.5.1.88]
D      Dole_2798 Penicillin amidase	K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97]
D      Dole_1176 putative endoribonuclease L-PSP	K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D      Dole_2009 alpha/beta hydrolase fold	K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114]
D      Dole_0775 carbohydrate kinase, YjeF related protein	K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D      Dole_3248 protein of unknown function UPF0031	K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D      Dole_1596 conserved hypothetical protein	K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D      Dole_2215 protein of unknown function DUF111	K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D      Dole_2188 methylmalonyl-CoA mutase, large subunit	K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13]
D      Dole_0893 putative CoA-substrate-specific enzyme activase	K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D      Dole_0894 putative CoA-substrate-specific enzyme activase	K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D      Dole_3161 putative CoA-substrate-specific enzyme activase	K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D      Dole_2771 putative CoA-substrate-specific enzyme activase	K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D      Dole_2772 putative CoA-substrate-specific enzyme activase	K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D      Dole_2776 putative CoA-substrate-specific enzyme activase	K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D      Dole_2010 AMP-dependent synthetase and ligase	K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1]
D      Dole_2601 UDP-N-acetylmuramate	K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D      Dole_2829 electron transport complex, RnfABCDGE type, D subunit	K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D      Dole_0307 electron transport complex, RnfABCDGE type, D subunit	K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D      Dole_2830 4Fe-4S ferredoxin iron-sulfur binding domain protein	K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D      Dole_0306 electron transport complex, RnfABCDGE type, C subunit	K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D      Dole_0311 electron transport complex, RnfABCDGE type, B subunit	K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D      Dole_2536 Na-translocating NADH-quinone reductase subunit A	K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D      Dole_2537 NADH:ubiquinone oxidoreductase, subunit B	K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D      Dole_2538 NADH:ubiquinone oxidoreductase, subunit C	K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D      Dole_2539 NADH:ubiquinone oxidoreductase, subunit D	K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D      Dole_2540 NADH:ubiquinone oxidoreductase, subunit E	K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D      Dole_2541 NADH:ubiquinone oxidoreductase, subunit F	K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D      Dole_2801 copper-translocating P-type ATPase	K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D      Dole_0421 heavy metal translocating P-type ATPase	K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D      Dole_2701 ATPase, P-type (transporting), HAD superfamily, subfamily IC	K12953 ctpF; cation-transporting P-type ATPase F [EC:7.2.2.-]
C    99981 Carbohydrate metabolism
D      Dole_2098 sugar fermentation stimulation protein	K06206 sfsA; sugar fermentation stimulation protein A
C    99982 Energy metabolism
D      Dole_1537 formate dehydrogenase family accessory protein FdhD	K02379 fdhD; FdhD protein
D      Dole_2655 4Fe-4S ferredoxin iron-sulfur binding domain protein	K05337 fer; ferredoxin
D      Dole_2612 hypothetical protein	K05337 fer; ferredoxin
D      Dole_2828 electron transport complex, RnfABCDGE type, G subunit	K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D      Dole_0308 FMN-binding domain protein	K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D      Dole_2827 electron transport complex, RnfABCDGE type, E subunit	K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D      Dole_0309 RnfA-Nqr electron transport subunit	K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D      Dole_2826 electron transport complex, RnfABCDGE type, A subunit	K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D      Dole_0310 RnfA-Nqr electron transport subunit	K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D      Dole_0755 nitrogen-fixing NifU domain protein	K04488 iscU; nitrogen fixation protein NifU and related proteins
D      Dole_0318 nitrogen-fixing NifU domain protein	K04488 iscU; nitrogen fixation protein NifU and related proteins
D      Dole_3133 von Willebrand factor type A	K02448 norD; nitric oxide reductase NorD protein
D      Dole_2683 von Willebrand factor type A	K02448 norD; nitric oxide reductase NorD protein
D      Dole_2684 ATPase associated with various cellular activities AAA_5	K04748 norQ; nitric oxide reductase NorQ protein
D      Dole_3134 ATPase associated with various cellular activities AAA_5	K04748 norQ; nitric oxide reductase NorQ protein
D      Dole_0999 heterodisulfide reductase, subunit A (HdrA)	K16885 qmoA; quinone-modifying oxidoreductase, subunit QmoA
D      Dole_1000 methyl-viologen-reducing hydrogenase delta subunit	K16886 qmoB; quinone-modifying oxidoreductase, subunit QmoB
D      Dole_1001 heterodisulfide reductase, putative	K16887 qmoC; quinone-modifying oxidoreductase, subunit QmoC
D      Dole_1418 Electron transfer flavoprotein alpha/beta-subunit	K03521 fixA; electron transfer flavoprotein beta subunit
D      Dole_1923 Electron transfer flavoprotein alpha/beta-subunit	K03521 fixA; electron transfer flavoprotein beta subunit
D      Dole_0463 DsrC family protein	K23077 dsrC; dissimilatory sulfite reductase related protein
C    99983 Lipid metabolism
C    99984 Nucleotide metabolism
C    99985 Amino acid metabolism
D      Dole_1179 alanine racemase domain protein	K06997 yggS; PLP dependent protein
C    99986 Glycan metabolism
C    99987 Cofactor metabolism
D      Dole_0647 ABC-1 domain protein	K03688 ubiB; ubiquinone biosynthesis protein
D      Dole_0206 molybdopterin-guanine dinucleotide biosynthesis protein B	K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C    99988 Secondary metabolism
C    99999 Others
B
B  09192 Unclassified: genetic information processing
C    99973 Transcription
D      Dole_2018 cold-shock DNA-binding domain protein	K03704 cspA; cold shock protein
D      Dole_3065 cold-shock DNA-binding domain protein	K03704 cspA; cold shock protein
D      Dole_0163 RNA binding S1 domain protein	K06959 tex; protein Tex
D      Dole_1911 protein of unknown function DUF370	K09777 remA; extracellular matrix regulatory protein A
C    99974 Translation
D      Dole_1402 beta-lactamase domain protein	K07576 K07576; metallo-beta-lactamase family protein
C    99975 Protein processing
D      Dole_2482 ATP-dependent Clp protease adaptor protein ClpS	K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D      Dole_2692 trigger factor	K03545 tig; trigger factor
D      Dole_1332 uncharacterized protein involved in formate dehydrogenase formation	K02380 fdhE; FdhE protein
D      Dole_2697 SsrA-binding protein	K03664 smpB; SsrA-binding protein
D      Dole_2968 glutaredoxin	K06191 nrdH; glutaredoxin-like protein NrdH
D      Dole_2735 Mg chelatase, subunit ChlI	K07391 comM; magnesium chelatase family protein
D      Dole_1104 ResB family protein	K07399 resB; cytochrome c biogenesis protein
D      Dole_0020 protein of unknown function DUF107	K07403 nfeD; membrane-bound serine protease (ClpP class)
C    99976 Replication and repair
D      Dole_0675 DNA repair protein RadC	K03630 radC; DNA repair protein RadC
D      Dole_2092 DNA repair protein RadC	K03630 radC; DNA repair protein RadC
D      Dole_2916 DNA repair protein RadC	K03630 radC; DNA repair protein RadC
D      Dole_3209 protein of unknown function DUF195	K09760 rmuC; DNA recombination protein RmuC
D      Dole_2298 protein of unknown function UPF0102	K07460 yraN; putative endonuclease
D      Dole_1655 Excinuclease ABC C subunit domain protein	K07461 K07461; putative endonuclease
D      Dole_2997 Excinuclease ABC C subunit domain protein	K07461 K07461; putative endonuclease
D      Dole_0282 conserved hypothetical protein	K07465 K07465; putative RecB family exonuclease
D      Dole_2921 conserved hypothetical protein	K07465 K07465; putative RecB family exonuclease
D      Dole_2444 DNA protecting protein DprA	K04096 smf; DNA processing protein
D      Dole_2133 AAA ATPase central domain protein	K07478 ycaJ; putative ATPase
D      Dole_2911 phage/plasmid primase, P4 family	K06919 K06919; putative DNA primase/helicase
D      Dole_1384 transposase IS4 family protein	K07481 K07481; transposase, IS5 family
D      Dole_1826 transposase IS4 family protein	K07481 K07481; transposase, IS5 family
D      Dole_1827 transposase IS4 family protein	K07481 K07481; transposase, IS5 family
D      Dole_1219 transposase IS4 family protein	K07481 K07481; transposase, IS5 family
D      Dole_0660 transposase IS4 family protein	K07481 K07481; transposase, IS5 family
D      Dole_3091 transposase IS4 family protein	K07481 K07481; transposase, IS5 family
D      Dole_3250 transposase IS4 family protein	K07481 K07481; transposase, IS5 family
D      Dole_2457 transposase IS4 family protein	K07481 K07481; transposase, IS5 family
D      Dole_2638 transposase IS4 family protein	K07481 K07481; transposase, IS5 family
D      Dole_1213 transposase and inactivated derivative	K07483 K07483; transposase
D      Dole_1701 protein of unknown function DUF1568	K07491 rayT; REP-associated tyrosine transposase
D      Dole_1784 hypothetical protein	K07491 rayT; REP-associated tyrosine transposase
D      Dole_1872 protein of unknown function DUF1568	K07491 rayT; REP-associated tyrosine transposase
D      Dole_0793 protein of unknown function DUF1568	K07491 rayT; REP-associated tyrosine transposase
D      Dole_0844 protein of unknown function DUF1568	K07491 rayT; REP-associated tyrosine transposase
D      Dole_1212 Integrase catalytic region	K07497 K07497; putative transposase
D      Dole_0288 integrase family protein	K14059 int; integrase
C    99979 Viral proteins
C    99998 Others
D      Dole_0541 conserved hypothetical protein	K09747 ebfC; nucleoid-associated protein EbfC
B
B  09193 Unclassified: signaling and cellular processes
C    99977 Transport
D      Dole_0353 major facilitator superfamily MFS_1	K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D      Dole_3225 phosphate transporter	K03306 TC.PIT; inorganic phosphate transporter, PiT family
D      Dole_2269 sodium:neurotransmitter symporter	K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D      Dole_1026 sodium:neurotransmitter symporter	K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D      Dole_2117 Na+ dependent nucleoside transporter domain protein	K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C    99978 Cell growth
D      Dole_2510 Cobyrinic acid ac-diamide synthase	K07321 cooC; CO dehydrogenase maturation factor
D      Dole_1029 Cobyrinic acid ac-diamide synthase	K07321 cooC; CO dehydrogenase maturation factor
D      Dole_2777 Cobyrinic acid ac-diamide synthase	K07321 cooC; CO dehydrogenase maturation factor
D      Dole_1488 Cobyrinic acid ac-diamide synthase	K07321 cooC; CO dehydrogenase maturation factor
D      Dole_0103 single-stranded nucleic acid binding R3H domain protein	K06346 jag; spoIIIJ-associated protein
D      Dole_2452 peptidase M23B	K22719 envC; murein hydrolase activator
C    99993 Cell motility
D      Dole_0165 TfoX domain protein	K07343 tfoX; DNA transformation protein and related proteins
D      Dole_2372 gliding motility protein (MglA)	K24105 mglA; mutual gliding-motility protein MglA
C    99995 Signaling proteins
D      Dole_1761 small GTP-binding protein	K06207 typA; GTP-binding protein
D      Dole_0779 PhoH family protein	K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D      Dole_2961 PhoH family protein	K07175 phoH2; PhoH-like ATPase
D      Dole_1489 SH3 type 3 domain protein	K07184 ygiM; SH3 domain protein
C    99992 Structural proteins
D      Dole_0380 outer membrane lipoprotein carrier protein LolA	K03634 lolA; outer membrane lipoprotein carrier protein
D      Dole_2280 VacJ family lipoprotein	K04754 mlaA; phospholipid-binding lipoprotein MlaA
D      Dole_2843 outer membrane chaperone Skp (OmpH)	K06142 hlpA; outer membrane protein
D      Dole_2051 protein of unknown function DUF481	K07283 ydiY; putative salt-induced outer membrane protein
C    99994 Others
D      Dole_1929 phosphate uptake regulator, PhoU	K02039 phoU; phosphate transport system protein
D      Dole_0684 molybdenum cofactor synthesis domain	K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D      Dole_0369 DNA binding domain, excisionase family	K07219 K07219; putative molybdopterin biosynthesis protein
B
B  09194 Poorly characterized
C    99996 General function prediction only
D      Dole_0780 Colicin V production protein	K03558 cvpA; membrane protein required for colicin V production
D      Dole_1953 DEAD/DEAH box helicase domain protein	K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D      Dole_2995 Patatin	K07001 K07001; NTE family protein
D      Dole_0492 Haloacid dehalogenase domain protein hydrolase	K07025 K07025; putative hydrolase of the HAD superfamily
D      Dole_0014 putative ribonuclease BN	K07058 K07058; membrane protein
D      Dole_1528 LemA family protein	K03744 lemA; LemA protein
D      Dole_3214 Sporulation domain protein	K03749 dedD; DedD protein
D      Dole_2007 protein of unknown function DUF368	K08974 K08974; putative membrane protein
D      Dole_0430 hypothetical protein	K08982 K08982; putative membrane protein
D      Dole_2341 phosphoribosylaminoimidazole carboxylase ATPase subunit	K11312 K11312; cupin 2 domain-containing protein
D      Dole_2347 phosphoribosylaminoimidazole carboxylase ATPase subunit	K11312 K11312; cupin 2 domain-containing protein
C    99997 Function unknown
D      Dole_1532 protein of unknown function DUF255	K06888 K06888; uncharacterized protein
D      Dole_1061 temperature sensitive supressor-like protein	K06889 K06889; uncharacterized protein
D      Dole_2905 conserved hypothetical protein	K06889 K06889; uncharacterized protein
D      Dole_1724 protein of unknown function UPF0005	K06890 K06890; uncharacterized protein
D      Dole_2868 CoA-binding domain protein	K06929 K06929; uncharacterized protein
D      Dole_1957 protein of unknown function DUF134	K06933 K06933; uncharacterized protein
D      Dole_2664 protein of unknown function DUF296	K06934 K06934; uncharacterized protein
D      Dole_0539 protein of unknown function UPF0153	K06940 K06940; uncharacterized protein
D      Dole_2665 protein of unknown function UPF0153	K06940 K06940; uncharacterized protein
D      Dole_2621 protein of unknown function UPF0153	K06940 K06940; uncharacterized protein
D      Dole_2888 protein of unknown function UPF0153	K06940 K06940; uncharacterized protein
D      Dole_0437 protein of unknown function UPF0153	K06940 K06940; uncharacterized protein
D      Dole_1766 metal dependent phophohydrolase	K06950 K06950; uncharacterized protein
D      Dole_1644 metal dependent phosphohydrolase	K06950 K06950; uncharacterized protein
D      Dole_0350 amine oxidase	K06954 K06954; uncharacterized protein
D      Dole_2308 conserved hypothetical protein	K06960 K06960; uncharacterized protein
D      Dole_1633 protein of unknown function DUF901	K06962 K06962; uncharacterized protein
D      Dole_2422 peptidase C39 bacteriocin processing	K06992 K06992; uncharacterized protein
D      Dole_0610 exporter of the RND superfamily protein-like protein	K07003 K07003; uncharacterized protein
D      Dole_0392 exporter of the RND superfamily protein-like protein	K07003 K07003; uncharacterized protein
D      Dole_2278 transport protein, putative	K07003 K07003; uncharacterized protein
D      Dole_1774 Patched family protein	K07003 K07003; uncharacterized protein
D      Dole_0692 4-vinyl reductase 4VR	K07013 K07013; uncharacterized protein
D      Dole_3190 alpha/beta hydrolase family protein	K07018 K07018; uncharacterized protein
D      Dole_0172 alpha/beta hydrolase fold	K07019 K07019; uncharacterized protein
D      Dole_0143 amidohydrolase 2	K07045 K07045; uncharacterized protein
D      Dole_1607 amidohydrolase 2	K07045 K07045; uncharacterized protein
D      Dole_1069 amidohydrolase 2	K07045 K07045; uncharacterized protein
D      Dole_1919 amidohydrolase 2	K07045 K07045; uncharacterized protein
D      Dole_0924 nucleic acid-binding protein contains PIN domain-like protein	K07063 K07063; uncharacterized protein
D      Dole_1902 conserved hypothetical protein	K07064 K07064; uncharacterized protein
D      Dole_1783 PilT protein domain protein	K07064 K07064; uncharacterized protein
D      Dole_1602 protein of unknown function DUF35	K07068 K07068; uncharacterized protein
D      Dole_1467 NAD-dependent epimerase/dehydratase	K07071 K07071; uncharacterized protein
D      Dole_3066 domain of unknown function DUF1731	K07071 K07071; uncharacterized protein
D      Dole_2877 permease	K07089 K07089; uncharacterized protein
D      Dole_1353 protein of unknown function DUF81	K07090 K07090; uncharacterized protein
D      Dole_1378 conserved hypothetical protein	K07090 K07090; uncharacterized protein
D      Dole_2891 protein of unknown function DUF81	K07090 K07090; uncharacterized protein
D      Dole_0024 phosphodiesterase, MJ0936 family	K07095 K07095; uncharacterized protein
D      Dole_0324 phosphodiesterase, MJ0936 family	K07095 K07095; uncharacterized protein
D      Dole_2142 metallophosphoesterase	K07096 K07096; uncharacterized protein
D      Dole_1743 metallophosphoesterase	K07096 K07096; uncharacterized protein
D      Dole_0975 metallophosphoesterase	K07098 K07098; uncharacterized protein
D      Dole_3014 protein of unknown function DUF395 YeeE/YedE	K07112 K07112; uncharacterized protein
D      Dole_3015 protein of unknown function DUF395, YeeE/YedE	K07112 K07112; uncharacterized protein
D      Dole_2804 conserved hypothetical protein	K07112 K07112; uncharacterized protein
D      Dole_3245 conserved hypothetical protein	K07112 K07112; uncharacterized protein
D      Dole_2803 protein of unknown function DUF395 YeeE/YedE	K07112 K07112; uncharacterized protein
D      Dole_0979 nuclear protein SET	K07117 K07117; uncharacterized protein
D      Dole_1475 short-chain dehydrogenase/reductase SDR	K07124 K07124; uncharacterized protein
D      Dole_2718 Sel1 domain protein repeat-containing protein	K07126 K07126; uncharacterized protein
D      Dole_2955 ATPase, AAA+ superfamily	K07133 K07133; uncharacterized protein
D      Dole_0644 conserved hypothetical protein	K07133 K07133; uncharacterized protein
D      Dole_1841 ATPase	K07133 K07133; uncharacterized protein
D      Dole_3137 putative GTP-binding protein	K07133 K07133; uncharacterized protein
D      Dole_2977 conserved hypothetical protein	K07133 K07133; uncharacterized protein
D      Dole_1843 conserved hypothetical protein	K07133 K07133; uncharacterized protein
D      Dole_1813 AAA+ superfamily protein	K07133 K07133; uncharacterized protein
D      Dole_0829 ATPase protein	K07133 K07133; uncharacterized protein
D      Dole_2297 4Fe-4S ferredoxin iron-sulfur binding domain protein	K07138 K07138; uncharacterized protein
D      Dole_0964 conserved hypothetical radical SAM protein	K07139 K07139; uncharacterized protein
D      Dole_3130 VWA containing CoxE family protein	K07161 K07161; uncharacterized protein
D      Dole_2149 protein of unknown function DUF164	K07164 K07164; uncharacterized protein
D      Dole_0101 protein of unknown function DUF37	K08998 K08998; uncharacterized protein
D      Dole_1043 protein of unknown function DUF37	K08998 K08998; uncharacterized protein
D      Dole_2354 protein of unknown function DUF151	K08999 K08999; uncharacterized protein
D      Dole_2350 protein of unknown function DUF99	K09120 K09120; uncharacterized protein
D      Dole_0289 protein of unknown function DUF167	K09131 K09131; uncharacterized protein
D      Dole_1082 protein of unknown function DUF401	K09133 K09133; uncharacterized protein
D      Dole_0185 conserved hypothetical cytosolic protein	K09138 K09138; uncharacterized protein
D      Dole_2611 hypothetical protein	K09143 K09143; uncharacterized protein
D      Dole_1205 protein of unknown function DUF985	K09705 K09705; uncharacterized protein
D      Dole_3034 protein of unknown function DUF503	K09764 K09764; uncharacterized protein
D      Dole_1206 protein of unknown function DUF188	K09768 K09768; uncharacterized protein
D      Dole_1914 protein of unknown function DUF343	K09791 K09791; uncharacterized protein
D      Dole_1181 protein of unknown function DUF456	K09793 K09793; uncharacterized protein
D      Dole_2454 protein of unknown function DUF610 YibQ	K09798 K09798; uncharacterized protein
D      Dole_0658 protein of unknown function DUF497	K09803 K09803; uncharacterized protein
D      Dole_2639 protein of unknown function DUF497	K09803 K09803; uncharacterized protein
D      Dole_1187 conserved hypothetical protein	K00243 K00243; uncharacterized protein
D      Dole_0858 protein of unknown function DUF486	K09922 K09922; uncharacterized protein
D      Dole_0419 conserved hypothetical protein	K09924 K09924; uncharacterized protein
D      Dole_2163 putative membrane protein with signal peptide	K09928 K09928; uncharacterized protein
D      Dole_0082 conserved hypothetical membrane protein	K09937 K09937; uncharacterized protein
D      Dole_3082 conserved hypothetical protein	K09940 K09940; uncharacterized protein
D      Dole_2386 conserved hypothetical protein	K09978 K09978; uncharacterized protein
D      Dole_0048 conserved hypothetical cytosolic protein	K09989 K09989; uncharacterized protein
D      Dole_3224 protein of unknown function DUF47	K07220 K07220; uncharacterized protein
D      Dole_1444 nucleoside-diphosphate-sugar epimerase	K07276 K07276; uncharacterized protein
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#Last updated: June 22, 2024