+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Dipodomys ordii (Ord's kangaroo rat)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 105993780 Rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 105998216 Rngtt; mRNA-capping enzyme isoform X1 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 105985329 Cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 105995784 Cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 105983171 Cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 105982285 Fam103a1; RNMT-activating mini protein K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 105990823 Ncbp1; LOW QUALITY PROTEIN: nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 105988005 Ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 105994478 Nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 105995524 Cpsf7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 105987375 Cpsf6; cleavage and polyadenylation specificity factor subunit 6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 106002502 Clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 105984038 Pcf11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 105998997 Cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 105985878 Cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 105983730 Cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 105990849 Cpsf4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 105980189 Fip1l1; pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 105995160 Wdr33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 105994501 Wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 105990644 Ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 105983690 Ppp1cb; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 105989189 Ppp1ca; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 106000456 Ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 105991686 Cstf1; cleavage stimulation factor subunit 1 isoform X1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 105986322 Cstf2t; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 105999932 Cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 105988064 Cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 105997989 Sympk; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 105981775 Snrpb; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 105985762 LOW QUALITY PROTEIN: small nuclear ribonucleoprotein Sm D3-like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 105986270 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 105986452 Snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 106002076 small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 106002143 small nuclear ribonucleoprotein F-like K11098 SNRPF; small nuclear ribonucleoprotein F
E 106000663 Snrpg; LOW QUALITY PROTEIN: small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 105999129 Lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 105996686 Lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 105985878 Cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 105983730 Cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 105986322 Cstf2t; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 105999932 Cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 105997989 Sympk; symplekin K06100 SYMPK; symplekin
E 105991316 Slbp; histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 105985977 Casp8ap2; CASP8-associated protein 2 isoform X1 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 105990169 transcription elongation factor SPT4-A-like K15171 SUPT4H1; transcription elongation factor SPT4
E 105983338 Supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 106000905 Supt5h; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 105995808 Mettl3; N6-adenosine-methyltransferase 70 kDa subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 105991239 Mettl14; N6-adenosine-methyltransferase subunit METTL14 isoform X1 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 105993765 Mettl4; methyltransferase-like protein 4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 105985682 Mettl16; methyltransferase-like protein 16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 105991806 Wtap; pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 105982724 Kiaa1429; protein virilizer homolog K22910 VIRMA; protein virilizer
E 106002852 Rbm15b; LOW QUALITY PROTEIN: putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 105997473 Rbm15; putative RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 105981306 Zc3h13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 105999672 Cbll1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 105984813 Papola; poly(A) polymerase alpha isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 105990192 Papolg; poly(A) polymerase gamma isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 105990934 Papolb; LOW QUALITY PROTEIN: poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 105985381 Papd4; poly(A) RNA polymerase GLD2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 105995245 Tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 105986476 Bard1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 105981058 Rbm26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 105994459 Fto; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 105985847 Alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 105999208 Tardbp; TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 105983245 Dhx40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 105980522 Kin; DNA/RNA-binding protein KIN17 isoform X1 K13102 KIN; DNA/RNA-binding protein KIN17
D 105994761 Mettl8; methyltransferase-like protein 8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 105981795 Mettl22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 105997762 Fam46a; protein FAM46A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 105998751 Fam46b; protein FAM46B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 105991948 Fam46c; protein FAM46C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 105995198 Fam46d; protein FAM46D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 105997374 Srrt; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 105987138 Rbm8a; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 105989959 Magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 106001098 Magohb; protein mago nashi homolog 2 isoform X1 K12877 MAGOH; protein mago nashi
E 105998400 Alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 105996855 spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 105996861 Ddx39b; spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 106003123 Eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 105981237 Ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 106002214 Casc3; protein CASC3 K14323 CASC3; protein CASC3
E 105982573 Sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 105982658 pinin K13114 PNN; pinin
E 105992521 Acin1; apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 105982176 Rnps1; RNA-binding protein with serine-rich domain 1 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 105997846 Srrm1; serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 105984599 Thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 105986942 Thoc2; THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 105985429 Thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 105998400 Alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 105984341 Thoc5; THO complex subunit 5 homolog isoform X1 K13174 THOC5; THO complex subunit 5
E 105982243 Thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 105981408 Thoc7; THO complex subunit 7 homolog isoform X1 K13176 THOC7; THO complex subunit 7
E 105986970 THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 105990351 Pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 105982040 transcription and mRNA export factor ENY2-like K11368 ENY2; enhancer of yellow 2 transcription factor
E 105982801 Eny2; transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 105992890 Cetn2; centrin-2 K10840 CETN2; centrin-2
E 105985400 Cetn3; centrin-3 isoform X1 K16466 CETN3; centrin-3
E 105998253 Mcm3ap; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 105989655 Tpr; nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 105991687 Rae1; mRNA export factor K14298 RAE1; mRNA export factor
E 105981388 Sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 105990670 Nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 106003241 Nup85; nuclear pore complex protein Nup85 isoform X1 K14304 NUP85; nuclear pore complex protein Nup85
E 105993623 Nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 105992754 Nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 105988564 Nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 105992780 Nup62cl; nucleoporin-62 C-terminal-like protein K14306 NUP62; nuclear pore complex protein Nup62
E 105994267 Nup62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 105983443 Nup88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88
E 105994468 Nup93; nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93
E 105984056 Nup98; nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 105987368 Nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 105984542 Nup133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 105989312 Nup188; nucleoporin NUP188 homolog K14311 NUP188; nuclear pore complex protein Nup188
E 105996380 Nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 105987310 Nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 105996077 Nup160; nuclear pore complex protein Nup160 isoform X1 K14303 NUP160; nuclear pore complex protein Nup160
E 105995886 Nup35; nucleoporin NUP53 K14313 NUP35; nuclear pore complex protein Nup53
E 105989455 Nup205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 105984939 Nup210l; nuclear pore membrane glycoprotein 210-like isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 105981229 Nup210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 105989330 Nup214; nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 105996975 Pom121l2; POM121-like protein 2 K14316 POM121; nuclear pore complex protein Nup121
E 105997378 nuclear envelope pore membrane protein POM 121C-like isoform X1 K14316 POM121; nuclear pore complex protein Nup121
E 106000813 Nupl1; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 105991719 Nupl2; nucleoporin-like protein 2 K14321 NUPL2; nucleoporin-like protein 2
E 105990018 Ndc1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 105993807 Seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 105999292 Ranbp2; E3 SUMO-protein ligase RanBP2 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 105999707 Senp2; LOW QUALITY PROTEIN: sentrin-specific protease 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 105997894 Aaas; aladin K14320 AAAS; aladin
E 105985400 Cetn3; centrin-3 isoform X1 K16466 CETN3; centrin-3
E 105989285 Gle1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 105995265 Nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 106001490 Nxf3; nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 105992812 Nxt2; NTF2-related export protein 2 isoform X1 K14285 NXT1_2; NTF2-related export protein 1/2
E 105993685 Nxt1; NTF2-related export protein 1 K14285 NXT1_2; NTF2-related export protein 1/2
E 105994109 NTF2-related export protein 2-like K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 105990688 Ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 105982503 Anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 105990824 Anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 105983517 Tnfsf13; tumor necrosis factor ligand superfamily member 13 isoform X1 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 105998789 Elavl1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 105986079 Elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 105988995 Elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 105999096 Elavl3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 105985515 Faf2; LOW QUALITY PROTEIN: FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 105993387 Vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 105982663 Vcpkmt; protein-lysine methyltransferase METTL21D isoform X1 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 105999218 Tnpo2; transportin-2 K18727 TNPO2; transportin-2
E 105990187 Xpo1; exportin-1 K14290 XPO1; exportin-1
E 105999433 Xpo7; exportin-7 isoform X1 K18460 XPO7; exportin-7
E 105994946 ran-binding protein 17-like K24115 RANBP17; Ran-binding protein 17
E 105992099 Rangap1; ran GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 105983226 Taf15; TATA-binding protein-associated factor 2N K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 105995878 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 105985436 Eif4e1b; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 105989901 Eif4e2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 105988585 LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-I-like K03257 EIF4A; translation initiation factor 4A
E 105983464 Eif4a1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 105999702 Eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 105994998 Eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 105997972 Eif4g3; eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 105998362 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 105997930 Eif4b; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 105998459 Eif4h; eukaryotic translation initiation factor 4H K24086 EIF4H; translation initiation factor 4H
E 105991823 Eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 105986314 Eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 106002487 Eif4ebp3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 105984153 Eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 105999910 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E transporter-like K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 105984942 Angel2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 105986360 Angel1; protein angel homolog 1 K18729 ANGEL; protein angel
E 105992883 Fmr1; fragile X mental retardation protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105983498 Fxr2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 105998857 Fxr1; fragile X mental retardation syndrome-related protein 1 K15516 FMR; fragile X mental retardation protein
E 105996689 Cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 105982449 Cyfip1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 106000549 Gemin5; LOW QUALITY PROTEIN: gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 105991314 Tacc3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 105980294 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105982251 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105999346 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105990728 ATP-dependent RNA helicase DDX3X-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 105993485 Ddx3x; ATP-dependent RNA helicase DDX3X K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 105990080 Gigyf2; PERQ amino acid-rich with GYF domain-containing protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 105997375 Gigyf1; PERQ amino acid-rich with GYF domain-containing protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 106001687 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 105981577 Pabpc1l; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 105986148 Pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 105992165 Pabpc5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 105982820 Pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 105987297 Paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 105988689 Paip2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 105990211 Paip2b; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 105999858 Skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 105998576 Deaf1; deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 105981648 malignant T-cell-amplified sequence 2 K07575 MCTS; malignant T-cell-amplified sequence
E 105986960 Mcts1; malignant T-cell-amplified sequence 1 isoform X1 K07575 MCTS; malignant T-cell-amplified sequence
E 105987386 malignant T-cell-amplified sequence 1-like K07575 MCTS; malignant T-cell-amplified sequence
D APOBEC1-ACF complex
E 105991095 Apobec1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 105986356 A1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 105990364 Wibg; partner of Y14 and mago isoform X1 K14294 WIBG; partner of Y14 and mago
E 105980557 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105991427 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105995164 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105997934 Hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105990327 Dazap1; DAZ-associated protein 1 K14411 MSI; RNA-binding protein Musashi
E 105984187 Msi1; RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 106003119 Msi2; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 105993572 Hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 105987279 Pelo; protein pelota homolog K06965 PELO; protein pelota
E 105992522 Pabpn1; polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 105983008 Pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 105983110 ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 105983111 ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 105980692 Ddx25; ATP-dependent RNA helicase DDX25 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 105998790 Xab2; pre-mRNA-splicing factor SYF1 isoform X1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 105989182 Sarnp; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 106000065 Rcc1; regulator of chromosome condensation isoform X1 K11493 RCC1; regulator of chromosome condensation
E 105982427 Larp6; la-related protein 6 K18733 LARP6; la-related protein 6
E 105988638 Pura; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 105992102 Poldip3; polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 105986424 Zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 105994306 Leng8; leukocyte receptor cluster member 8 isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
E 105980989 Patl2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 105988710 Etf1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 105981978 Gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 106001209 Gspt2; eukaryotic peptide chain release factor GTP-binding subunit ERF3B isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 105994690 Upf1; regulator of nonsense transcripts 1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 105984499 Upf2; regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 105990344 Upf3a; regulator of nonsense transcripts 3A K14328 UPF3; regulator of nonsense transcripts 3
E 105988276 Upf3b; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 105996781 Ppp2ca; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 105993351 Ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 105980840 Ppp2r1b; LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 105994205 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 105994316 Ppp2r1a; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 105991307 Ppp2r2c; protein phosphatase 2, regulatory subunit B, gamma K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 105992581 Ppp2r2b; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 105989775 Ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 105999392 Ppp2r2a; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 105982594 Ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 105999592 Ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 105984698 Ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 105985177 Ppp2r5c; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 105985502 Ppp2r5e; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 105987795 Ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 105989093 Ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 105982086 Smg1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 105996525 Smg5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 105985837 Smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 105985254 Smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 105983531 Smg8; protein SMG8 K18734 SMG8; protein SMG8
E 105998034 Smg9; protein SMG9 K18735 SMG9; protein SMG9
E 105990080 Gigyf2; PERQ amino acid-rich with GYF domain-containing protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 105997375 Gigyf1; PERQ amino acid-rich with GYF domain-containing protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 105990970 Secisbp2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 105981125 Secisbp2l; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 105997962 Dhx34; LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 105992101 Gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 105987213 pumilio domain-containing protein KIAA0020 homolog K14844 PUF6; pumilio homology domain family member 6
E 105980967 Myo5a; LOW QUALITY PROTEIN: unconventional myosin-Va K10357 MYO5; myosin V
E 105980968 Myo5c; LOW QUALITY PROTEIN: unconventional myosin-Vc K10357 MYO5; myosin V
E 105987580 Myo5b; unconventional myosin-Vb K10357 MYO5; myosin V
E 105993226 Bicd2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 105998651 Bicd1; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 105981009 Exd1; exonuclease 3'-5' domain-containing protein 1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 105990935 Actb; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 105998427 Actg1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 105993008 Mbp; myelin basic protein isoform X1 K17269 MBP; myelin basic protein
E 105984427 Vim; vimentin K07606 VIM; vimentin
E 105994411 metallothionein-1E-like K14739 MT1_2; metallothionein 1/2
E 105994421 metallothionein-1E K14739 MT1_2; metallothionein 1/2
E 105994481 metallothionein-2 K14739 MT1_2; metallothionein 1/2
E 105992358 Myc; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 106002952 Gdf1; embryonic growth/differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 105982219 Tbx6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 105989731 Nanos1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 105990308 Khsrp; far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 105987116 Fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 105989323 Fubp3; far upstream element-binding protein 3 K13210 FUBP; far upstream element-binding protein
E 105996316 Eef1a2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 106000098 Eef1a1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 105995533 Eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 105991748 Hnrnpa2b1; heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 105984783 Hax1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 105980856 Agfg1; arf-GAP domain and FG repeat-containing protein 1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 105991668 Stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 105994803 Stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 105991770 Igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 105990421 Ptbp1; polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 105980294 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105982251 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105999346 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 105992883 Fmr1; fragile X mental retardation protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105983498 Fxr2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 105998857 Fxr1; fragile X mental retardation syndrome-related protein 1 K15516 FMR; fragile X mental retardation protein
E 105996689 Cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 105982449 Cyfip1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 105997927 Pcbp2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 105994601 Pcbp4; poly(rC)-binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 105998249 Pcbp3; LOW QUALITY PROTEIN: poly(rC)-binding protein 3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 105988066 Caprin1; caprin-1 K18743 CAPRIN1; caprin-1
E 105998631 Caprin2; caprin-2 K18744 CAPRIN2; caprin-2
E 105986037 Ybx1; nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 105995968 Xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 105992362 Ago2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 105999123 Ago1; protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 105999126 Ago3; protein argonaute-3 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 105999141 Ago4; protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 105995878 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 105985436 Eif4e1b; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 105989901 Eif4e2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 105994690 Upf1; regulator of nonsense transcripts 1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 105990728 ATP-dependent RNA helicase DDX3X-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 105993485 Ddx3x; ATP-dependent RNA helicase DDX3X K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 105980616 Ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 105984768 Mex3a; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 105987665 Mex3c; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 105993877 Fastk; fas-activated serine/threonine kinase isoform X1 K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 105996351 Lsm14b; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 105993033 Lsm14a; protein LSM14 homolog A K18749 LSM14; protein LSM14
E 105990206 Pcbp1; poly(rC)-binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 105997927 Pcbp2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 105986037 Ybx1; nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 105996195 Limd1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 105992539 Ajuba; LIM domain-containing protein ajuba isoform X1 K16682 AJUBA; LIM domain-containing protein
E 105991095 Apobec1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 105992068 DNA dC->dU-editing enzyme APOBEC-3-like K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 105991949 Mov10; putative helicase MOV-10 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 105998181 Pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 105992372 Tnpo1; transportin-1 K18752 TNPO1; transportin-1
E 105982086 Smg1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 105996525 Smg5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 105985837 Smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 105985254 Smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 106000910 Zfp36; tristetraprolin K15308 TTP; tristetraprolin
E 105985403 Zfp36l1; zinc finger protein 36, C3H1 type-like 1 K18753 ZFP36L; butyrate response factor
E 105986804 Zfp36l2; zinc finger protein 36, C3H1 type-like 2 K18753 ZFP36L; butyrate response factor
E 105990092 Lin28b; protein lin-28 homolog B isoform X1 K18754 LIN28; protein lin-28
E 105998915 Lin28a; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 105991274 Htt; huntingtin K04533 HD; huntingtin
E 105998648 Ipo8; importin-8 K18755 IPO8; importin-8
E 105986336 Bicc1; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 105980557 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105991427 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105995164 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105997934 Hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105987133 Prkacb; cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 105999274 Prkaca; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 105999761 Larp1b; LOW QUALITY PROTEIN: la-related protein 1B K18757 LARP1; la-related protein 1
E 106000551 Larp1; la-related protein 1 K18757 LARP1; la-related protein 1
E 105990648 Atxn2; ataxin-2 K23625 ATXN2_2L; ataxin 2/2L
E 105982155 Atxn2l; ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 105996592 Dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 105991063 Dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 105993138 Lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 105999843 Lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 105981290 Lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 105994746 Lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 105999953 Lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 105995689 Lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 105990275 Lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 105988418 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 105984995 kinesin light chain 1 K10407 KLC; kinesin light chain
E 105987810 Klc4; kinesin light chain 4 isoform X1 K10407 KLC; kinesin light chain
E 105989194 Klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 105998112 Klc3; kinesin light chain 3 isoform X1 K10407 KLC; kinesin light chain
E 105980967 Myo5a; LOW QUALITY PROTEIN: unconventional myosin-Va K10357 MYO5; myosin V
E 105980968 Myo5c; LOW QUALITY PROTEIN: unconventional myosin-Vc K10357 MYO5; myosin V
E 105987580 Myo5b; unconventional myosin-Vb K10357 MYO5; myosin V
E 105996598 Tuba4a; tubulin alpha-4A chain K07374 TUBA; tubulin alpha
E 105980368 Tubal3; LOW QUALITY PROTEIN: tubulin alpha chain-like 3 K07374 TUBA; tubulin alpha
E 105991067 Tuba8; LOW QUALITY PROTEIN: tubulin alpha-8 chain K07374 TUBA; tubulin alpha
E 105981516 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 105987526 Tuba1c; tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 105987533 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 105997194 Tuba3e; tubulin alpha-3E chain K07374 TUBA; tubulin alpha
E 105997195 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 105980294 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105982251 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105999346 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 106000549 Gemin5; LOW QUALITY PROTEIN: gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 105991314 Tacc3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 105992063 Tnrc6b; trinucleotide repeat-containing gene 6B protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 105982135 Tnrc6a; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 106001276 Tnrc6c; trinucleotide repeat-containing gene 6C protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 105982913 Cnot1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 105989521 Cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 105994310 Cnot3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 105989566 Cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 105996785 Cnot6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 105988472 Cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 105992627 Cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 106000561 Cnot8; CCR4-NOT transcription complex subunit 8 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 105993165 uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 105989362 Dis3l2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 105987174 Pan2; LOW QUALITY PROTEIN: PAB-dependent poly(A)-specific ribonuclease subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 105993920 Pan3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 105996818 Btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 105980604 Btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 105986525 Btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 105992091 Tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 105987587 Btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 106003200 Tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 105984153 Eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 105999910 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E transporter-like K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 105995538 Patl1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 105982387 Edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 105983150 Edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 105998078 Nanos2; nanos homolog 2 K18760 NANOS2; protein nanos 2
E 105999230 Nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 105984499 Upf2; regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 105990344 Upf3a; regulator of nonsense transcripts 3A K14328 UPF3; regulator of nonsense transcripts 3
E 105988276 Upf3b; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 105984097 Trim21; E3 ubiquitin-protein ligase TRIM21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 105994843 Trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 105995267 Polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 106001311 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 105983707 Eif2ak2; interferon-induced, double-stranded RNA-activated protein kinase isoform X1 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 105993909 Zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 105996346 Ythdf1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
E 105980488 Ythdf3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 105999713 Ythdf2; YTH domain-containing family protein 2 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 105990142 Tia1; nucleolysin TIA-1 isoform p40 K13201 TIA1; nucleolysin TIA-1/TIAR
E 105989751 Tial1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 106001687 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 105981577 Pabpc1l; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 105986148 Pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 105992165 Pabpc5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 105982820 Pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 105991668 Stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 105994803 Stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 105992883 Fmr1; fragile X mental retardation protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105983498 Fxr2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 105998857 Fxr1; fragile X mental retardation syndrome-related protein 1 K15516 FMR; fragile X mental retardation protein
E 105998789 Elavl1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 105998934 G3bp1; ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 105988562 G3bp2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 105995951 Eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 105990966 Eif3b; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 105988585 LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-I-like K03257 EIF4A; translation initiation factor 4A
E 105983464 Eif4a1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 105999702 Eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 106003123 Eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 105997930 Eif4b; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 105994998 Eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 105997972 Eif4g3; eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 105998362 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 105991793 Rps6ka2; ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 105992181 Rps6ka6; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 105993255 Rps6ka3; ribosomal protein S6 kinase alpha-3 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 105997775 Rps6ka1; ribosomal protein S6 kinase alpha-1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 105996780 Gnb2l1; guanine nucleotide-binding protein subunit beta-2-like 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 105995582 Traf2; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 105995265 Nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 106001490 Nxf3; nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 105997816 Hdac6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 105997827 histone deacetylase 6-like isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 105981750 Tdrd3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 105980503 Larp4b; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
E 105987559 Larp4; la-related protein 4 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 105996592 Dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 105991063 Dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 105980616 Ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 105982387 Edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 105983150 Edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 105995538 Patl1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 105993138 Lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 105999843 Lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 105981290 Lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 105994746 Lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 105999953 Lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 105995689 Lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 105990275 Lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 105988418 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 105995968 Xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 105993703 Xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D Other 5'-3' decay factors
E 105980540 Dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 106003108 Helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 105986643 Exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 105989341 Exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 105993324 Exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 105999030 Exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 106000876 Exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 105983066 Exosc6; LOW QUALITY PROTEIN: exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 105996203 Exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 105997154 Exosc8; exosome complex component RRP43 isoform X1 K12586 RRP43; exosome complex component RRP43
E 105989899 Exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 105981352 Dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 105980920 Dis3l; DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 105997401 Exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 105990230 C1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 105982895 Mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 105991126 probable ATP-dependent RNA helicase DDX60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 105994463 Papd5; non-canonical poly(A) RNA polymerase PAPD5 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 105983848 Papd7; non-canonical poly(A) RNA polymerase PAPD7 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 105993392 Zcchc7; zinc finger CCHC domain-containing protein 7 isoform X1 K12597 AIR1_2; protein AIR1/2
E 105987355 Skiv2l2; superkiller viralicidic activity 2-like 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 105999858 Skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 105989829 Ttc37; tetratricopeptide repeat protein 37 isoform X1 K12600 SKI3; superkiller protein 3
E 105982518 Wdr61; WD repeat-containing protein 61 isoform X1 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 105996785 Cnot6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 105988472 Cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 105982913 Cnot1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 105989521 Cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 105994310 Cnot3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 105989566 Cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 105992627 Cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 106000561 Cnot8; CCR4-NOT transcription complex subunit 8 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 105981253 Rqcd1; cell differentiation protein RCD1 homolog isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 105994861 Cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 105987174 Pan2; LOW QUALITY PROTEIN: PAB-dependent poly(A)-specific ribonuclease subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 105993920 Pan3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 105991845 Pnldc1; poly(A)-specific ribonuclease PARN-like domain-containing protein 1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 105982237 Parn; poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 105985617 Dhx36; ATP-dependent RNA helicase DHX36 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 105996818 Btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 105980604 Btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 105986525 Btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 105992091 Tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 105987587 Btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 106003200 Tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 105998946 Csf2; granulocyte-macrophage colony-stimulating factor K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 105995684 Noct; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 105990950 Eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 105982137 Eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 105980540 Dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 105981380 Pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 105982374 Ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 106003108 Helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 105996338 Helz2; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 105985031 Nrde2; protein NRDE2 homolog isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 105982675 Samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 106000906 Samd4b; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 105989024 Focad; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 105995816 Rnase2; non-secretory ribonuclease K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 106000429 Rnase1; ribonuclease pancreatic K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 106000451 Rnase4; ribonuclease 4 isoform X1 K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 105995821 ribonuclease 7-like K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 105995826 ribonuclease 8-like K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 106000428 Rnase6; ribonuclease K6 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 106000445 Rnase11; probable ribonuclease 11 K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 105980601 Zc3h12c; probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 105986206 Zc3h12a; ribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 105999321 Zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 105987363 Drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 105980797 Rexo2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 105991078 Eno2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 105983300 Eno3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 105999295 Eno1; alpha-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 105986887 Pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 105980514 Pfkp; ATP-dependent 6-phosphofructokinase, platelet type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 105987540 Pfkm; ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 105993995 Pfkl; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 105988700 Hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 105980195 Hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 105989341 Exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 105986643 Exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 105999030 Exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 105996203 Exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024