+F Repair protein KO
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DNA Repair and Recombination Proteins - Oryza sativa japonica (Japanese rice) (RAPDB)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Os03t0213400-01 Os03g0213400; Similar to RNA helicase. K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D Os10t0167600-01 Os10g0167600; Similar to CPD photolyase. K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Os04t0673400-01 Os04g0673400; Similar to Uracil-DNA glycosylase. K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Os02t0774500-01 Os02g0774500; Similar to DNA-3-methyladenine glycosylase (EC 3.2.2.21) (3-methyladenine DNA glycosidase). K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Os12t0211400-00 Os12g0211400; A/G-specific adenine glycosylase MutY, bacterial form domain containing protein. K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Os12t0212100-00 Os12g0212100; Similar to A/G-specific adenine DNA glycosylase. K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Os09t0101100-01 Os09g0101100; HhH-GPD domain domain containing protein. K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E Os02t0552600-00 Os02g0552600; Similar to F8K7.14 protein. K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E Os06t0237900-00 Os06g0237900; Conserved hypothetical protein. K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Os09t0536000-01 Os09g0536000; Exodeoxyribonuclease III xth family protein. K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F Os11t0186400-00 Os11g0186400; Similar to DNA polymerase delta catalytic subunit (EC 2.7.7.7). K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F Os03t0128500-01 Os03g0128500; Similar to DNA polymerase delta small subunit (EC 2.7.7.7). K02328 POLD2; DNA polymerase delta subunit 2
F Os01t0204000-01 Os01g0204000; DNA polymerase subunit Cdc27 domain containing protein. K03504 POLD3; DNA polymerase delta subunit 3
F Os09t0520100-01 Os09g0520100; DNA polymerase delta, subunit 4 family protein. K03505 POLD4; DNA polymerase delta subunit 4
F Os08t0163300-00 Os08g0163300; Similar to delta DNA polymerase. K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F Os02t0511901-00 Os02g0511901; Similar to DNA polymerase. K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F Os05t0160800-01 Os05g0160800; Similar to DNA polymerase epsilon subunit 2. K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F Os09t0568200-01 Os09g0568200; Similar to DNA polymerase epsilon subunit 3. K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E Os02t0805200-01 Os02g0805200; Proliferating cell nuclear antigen (PCNA) (Cyclin). K04802 PCNA; proliferating cell nuclear antigen
E Os05t0540100-01 Os05g0540100; Flap endonuclease-1a (EC 3.-.-.-) (OsFEN-1a). K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E Os03t0834000-01 Os03g0834000; Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b). K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E Os10t0489200-01 Os10g0489200; Similar to DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]). K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E Os06t0144000-01 Os06g0144000; BRCT domain containing protein. K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E Os07t0530100-01 Os07g0530100; Tyrosyl-DNA phosphodiesterase family protein. K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E Os03t0293400-01 Os03g0293400; Similar to basic helix-loop-helix family protein. K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E Os01t0737300-00 Os01g0737300; Similar to Phosphoesterase. K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E Os06t0237200-00 Os06g0237200; Similar to DNA polymerase lambda. K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E Os07t0413700-01 Os07g0413700; Similar to Poly(ADP)-ribose polymerase (EC 2.4.2.30). K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E Os02t0530600-01 Os02g0530600; Poly(ADP-ribose) polymerase, regulatory region domain containing protein. K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E Os01t0351100-00 Os01g0351100; Similar to Poly. K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E Os01t0351200-00 Os01g0351200; Similar to Poly. K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F Os08t0427500-01 Os08g0427500; DNA repair protein Rad4 family protein. K10838 XPC; xeroderma pigmentosum group C-complementing protein
F Os08t0430200-01 Os08g0430200; UV excision repair protein Rad23 family protein. K10839 RAD23; UV excision repair protein RAD23
F Os06t0264300-01 Os06g0264300; Similar to RAD23, isoform I. K10839 RAD23; UV excision repair protein RAD23
F Os02t0179300-01 Os02g0179300; Similar to RAD23 protein, isoform II. K10839 RAD23; UV excision repair protein RAD23
F Os09t0407200-01 Os09g0407200; Similar to RAD23, isoform I. K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F Os01t0106800-01 Os01g0106800; Similar to RING-box protein 1A (Regulator of cullins 1a) (dRbx1). K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F Os02t0708300-01 Os02g0708300; Zinc finger, RING/FYVE/PHD-type domain containing protein. K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F Os05t0592400-01 Os05g0592400; UV-damaged DNA binding protein. K10610 DDB1; DNA damage-binding protein 1
F Os01t0141700-01 Os01g0141700; Similar to predicted protein. K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F Os08t0459100-01 Os08g0459100; Leucine-rich repeat, cysteine-containing containing protein. K15082 RAD7; DNA repair protein RAD7
F Os07t0511500-01 Os07g0511500; Zinc finger, RING/FYVE/PHD-type domain containing protein. K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F Os05t0151000-00 Os05g0151000; Similar to DNA-directed RNA polymerase. K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F Os09t0110400-01 Os09g0110400; Similar to DNA-directed RNA polymerase II 36 kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II subunit 3). K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F Os02t0116900-01 Os02g0116900; Similar to 15.9 kDa subunit of RNA polymerase II. K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F Os02t0723300-01 Os02g0723300; Hypothetical conserved gene. K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F Os04t0487300-01 Os04g0487300; Similar to DNA-directed RNA polymerases II 24 kDa polypeptide. K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F Os01t0805800-01 Os01g0805800; DNA-directed RNA polymerase, RPB5 subunit domain containing protein. K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F Os11t0143400-00 Os11g0143400; DNA-directed RNA polymerase, RPB5 subunit domain containing protein. K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F Os12t0139500-01 Os12g0139500; DNA-directed RNA polymerase, RPB5 subunit domain containing protein. K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F Os03t0586600-01 Os03g0586600; Similar to DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD POLYPEPTIDE(RPABC6). K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F Os07t0463100-01 Os07g0463100; RNA polymerase subunit, RPB6/omega domain containing protein. K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F Os05t0400700-01 Os05g0400700; Similar to DNA-directed RNA polymerase II 19 kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5). K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F Os03t0845700-01 Os03g0845700; Similar to RPB17 (Fragment). K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F Os06t0697400-01 Os06g0697400; Similar to DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide. K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F Os11t0676650-00 Os11g0676650; Similar to DNA-directed RNA polymerase subunit. K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F Os03t0102200-01 Os03g0102200; Similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5). K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F Os07t0615800-00 Os07g0615800; DNA-directed RNA polymerase, M/15 kDa subunit domain containing protein. K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F Os12t0560400-01 Os12g0560400; Similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5). K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F Os11t0194800-01 Os11g0194800; Similar to DNA-directed RNA polymerase II 7.6 kDa polypeptide (EC 2.7.7.6) (RPB10) (RPB7.6). K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F Os12t0180400-01 Os12g0180400; Similar to DNA-directed RNA polymerase II 8.2 kDa polypeptide. K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F Os07t0172500-01 Os07g0172500; Similar to DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC 2.7.7.6). K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F Os07t0105100-00 Os07g0105100; Similar to DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide. K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F Os01t0530366-01 Os01g0530366; RNA polymerase Rbp10 domain containing protein. K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F Os01t0106800-01 Os01g0106800; Similar to RING-box protein 1A (Regulator of cullins 1a) (dRbx1). K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F Os02t0708300-01 Os02g0708300; Zinc finger, RING/FYVE/PHD-type domain containing protein. K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F Os05t0592400-01 Os05g0592400; UV-damaged DNA binding protein. K10610 DDB1; DNA damage-binding protein 1
F Os02t0307200-01 Os02g0307200; Similar to transducin family protein / WD-40 repeat family protein. K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F Os01t0102800-01 Os01g0102800; Similar to chromatin remodeling complex subunit. K10841 ERCC6; DNA excision repair protein ERCC-6
F Os01t0636700-01 Os01g0636700; DEAD-like helicase, N-terminal domain containing protein. K10841 ERCC6; DNA excision repair protein ERCC-6
F Os02t0134300-01 Os02g0134300; Protein of unknown function DUF701, zinc-binding putative family protein. K25829 ELOF1; transcription elongation factor 1
F Os07t0631100-01 Os07g0631100; Protein of unknown function DUF701, zinc-binding putative family protein. K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E Os01t0691600-01 Os01g0691600; Similar to DNA repair helicase XPB2 (EC 3.6.1.-) (XPB homolog 2) (ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2). K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E Os05t0144800-01 Os05g0144800; Similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2). K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E Os08t0338200-01 Os08g0338200; Kelch related domain containing protein. K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E Os04t0508900-00 Os04g0508900; Similar to OSIGBa0101P20.13 protein. K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E Os02t0125800-01 Os02g0125800; Transcription factor Tfb4 family protein. K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E Os04t0680000-00 Os04g0680000; Similar to predicted protein. K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E Os05t0198700-01 Os05g0198700; Similar to REX1 DNA Repair family protein. K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E Os05t0108500-01 Os05g0108500; Nucleotide excision repair, TFIIH, subunit TTDA domain containing protein. K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E Os07t0573600-01 Os07g0573600; Nucleotide excision repair, TFIIH, subunit TTDA domain containing protein. K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E Os05t0392300-01 Os05g0392300; Similar to Cyclin-dependent kinase D-1. K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E Os03t0737600-01 Os03g0737600; Cyclin H-1. K06634 CCNH; cyclin H
E Os11t0473100-01 Os11g0473100; Cdk-activating kinase assembly factor (MAT1) family protein. K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E Os06t0171700-01 Os06g0171700; Cdk-activating kinase assembly factor (MAT1) family protein. K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E Os05t0111000-01 Os05g0111000; Similar to Gag polyprotein [Contains: Core protein p15 (Matrix protein); Core protein p24; Core protein p12]. K07466 RFA1; replication factor A1
E Os02t0776800-01 Os02g0776800; Replication protein A 70 kDa, Meiotic and somatic DNA repair K07466 RFA1; replication factor A1
E Os03t0214100-01 Os03g0214100; Replication protein A1. K07466 RFA1; replication factor A1
E Os02t0829100-01 Os02g0829100; Replication protein A 30kDa. K10739 RFA2; replication factor A2
E Os02t0633400-01 Os02g0633400; Similar to 61 kDa protein homolog. K10739 RFA2; replication factor A2
E Os01t0253600-01 Os01g0253600; Replication factor A protein 3 domain containing protein. K10740 RPA3; replication factor A3
D Other NER factors
E Os10t0518900-01 Os10g0518900; Similar to DNA excision repair protein ERCC-1 (EC 3.1.-.-) (AtERCC1) (AtRAD10) (Ultraviolet hypersensitive 7). K10849 ERCC1; DNA excision repair protein ERCC-1
E Os03t0100400-01 Os03g0100400; Similar to DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet hypersensitive 1) (AtRAD1) (DNA excision repair protein XP-F homolog). K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E Os03t0205400-00 Os03g0205400; Similar to XPG I-region family protein, expressed. K10846 ERCC5; DNA excision repair protein ERCC-5
E Os10t0489200-01 Os10g0489200; Similar to DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]). K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E Os07t0177100-01 Os07g0177100; Armadillo-type fold domain containing protein. K15075 MET18; DNA repair/transcription protein MET18/MMS19
E Os08t0170900-01 Os08g0170900; Winged helix repressor DNA-binding domain containing protein. K03869 CUL3; cullin 3
E Os04t0643000-01 Os04g0643000; Similar to Cullin-3 (CUL-3). Splice isoform 2. K03869 CUL3; cullin 3
E Os02t0746000-01 Os02g0746000; Similar to Cullin-3 (CUL-3). Splice isoform 3. K03869 CUL3; cullin 3
E Os11t0707700-01 Os11g0707700; Similar to Elongin C (Fragment). K03872 ELOC; elongin-C
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Os05t0274200-01 Os05g0274200; DNA mismatch repair protein MSH2 (MUS1). K08735 MSH2; DNA mismatch repair protein MSH2
E Os04t0682900-01 Os04g0682900; Similar to H0124B04.17 protein. K08736 MSH3; DNA mismatch repair protein MSH3
E Os09t0407600-01 Os09g0407600; Similar to DNA mismatch repair protein. K08737 MSH6; DNA mismatch repair protein MSH6
E Os01t0180600-01 Os01g0180600; Similar to MutS homolog 7 (Fragment). K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E Os01t0958900-01 Os01g0958900; Similar to MLH1 protein (Fragment). K08734 MLH1; DNA mismatch repair protein MLH1
E Os02t0592300-01 Os02g0592300; Similar to predicted protein. K10858 PMS2; DNA mismatch repair protein PMS2
D DNA polymerase delta complex
E Os11t0186400-00 Os11g0186400; Similar to DNA polymerase delta catalytic subunit (EC 2.7.7.7). K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E Os03t0128500-01 Os03g0128500; Similar to DNA polymerase delta small subunit (EC 2.7.7.7). K02328 POLD2; DNA polymerase delta subunit 2
E Os01t0204000-01 Os01g0204000; DNA polymerase subunit Cdc27 domain containing protein. K03504 POLD3; DNA polymerase delta subunit 3
E Os09t0520100-01 Os09g0520100; DNA polymerase delta, subunit 4 family protein. K03505 POLD4; DNA polymerase delta subunit 4
E Os08t0163300-00 Os08g0163300; Similar to delta DNA polymerase. K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E Os05t0111000-01 Os05g0111000; Similar to Gag polyprotein [Contains: Core protein p15 (Matrix protein); Core protein p24; Core protein p12]. K07466 RFA1; replication factor A1
E Os02t0776800-01 Os02g0776800; Replication protein A 70 kDa, Meiotic and somatic DNA repair K07466 RFA1; replication factor A1
E Os03t0214100-01 Os03g0214100; Replication protein A1. K07466 RFA1; replication factor A1
E Os02t0829100-01 Os02g0829100; Replication protein A 30kDa. K10739 RFA2; replication factor A2
E Os02t0633400-01 Os02g0633400; Similar to 61 kDa protein homolog. K10739 RFA2; replication factor A2
E Os01t0253600-01 Os01g0253600; Replication factor A protein 3 domain containing protein. K10740 RPA3; replication factor A3
D RFC (replication factor C)
E Os11t0572100-01 Os11g0572100; Similar to DNA ligase (EC 6.5.1.2). K10754 RFC1; replication factor C subunit 1
E Os12t0176500-01 Os12g0176500; Similar to Replication factor C subunit RFC4. K10755 RFC2_4; replication factor C subunit 2/4
E Os04t0569000-01 Os04g0569000; Similar to Replication factor C 40kDa subunit. K10755 RFC2_4; replication factor C subunit 2/4
E Os03t0792600-01 Os03g0792600; ATPase, AAA+ type, core domain containing protein. K10756 RFC3_5; replication factor C subunit 3/5
E Os10t0574500-00 Os10g0574500; DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal domain containing protein. K10756 RFC3_5; replication factor C subunit 3/5
E Os02t0775200-01 Os02g0775200; Similar to Activator 1 36 kDa subunit (Replication factor C 36 kDa subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Replication factor C subunit 5). K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E Os02t0805200-01 Os02g0805200; Proliferating cell nuclear antigen (PCNA) (Cyclin). K04802 PCNA; proliferating cell nuclear antigen
E Os01t0777300-00 Os01g0777300; DNA repair protein (XPGC)/yeast Rad family protein. K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E Os10t0489200-01 Os10g0489200; Similar to DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]). K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E Os08t0282500-01 Os08g0282500; WD40 repeat-like domain containing protein. K24755 WDR76; WD repeat-containing protein 76
E Os08t0285200-01 Os08g0285200; WD40 repeat-like domain containing protein. K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E Os04t0635900-01 Os04g0635900; DNA repair exonuclease family protein. K10865 MRE11; double-strand break repair protein MRE11
E Os08t0177600-00 Os08g0177600; Similar to double-strand break repair protein MRE11. K10865 MRE11; double-strand break repair protein MRE11
E Os10t0487300-01 Os10g0487300; Forkhead-associated domain containing protein. K10867 NBN; nibrin
D BRCA1-core complex
E Os05t0486600-01 Os05g0486600; Hypothetical conserved gene. K10683 BARD1; BRCA1-associated RING domain protein 1
E Os05t0512000-01 Os05g0512000; Zinc finger, RING/FYVE/PHD-type domain containing protein. K10683 BARD1; BRCA1-associated RING domain protein 1
E Os04t0512400-01 Os04g0512400; Similar to Midline 1 protein (Tripartite motif protein 18). K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E Os06t0150100-01 Os06g0150100; Conserved hypothetical protein. K20776 BABAM; BRISC and BRCA1-A complex member 1
E Os06t0715600-01 Os06g0715600; Brain and reproductive organ-expressed family protein. K12173 BRE; BRCA1-A complex subunit BRE
E Os05t0542600-01 Os05g0542600; Mov34/MPN/PAD-1 family protein. K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E Os09t0551800-00 Os09g0551800; Helicase-like, DEXD box c2 type domain containing protein. K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E Os07t0689950-00 Os07g0689950; BRCT domain containing protein. K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E Os03t0304400-01 Os03g0304400; Zinc finger, RING/FYVE/PHD-type domain containing protein. K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E Os04t0635900-01 Os04g0635900; DNA repair exonuclease family protein. K10865 MRE11; double-strand break repair protein MRE11
E Os08t0177600-00 Os08g0177600; Similar to double-strand break repair protein MRE11. K10865 MRE11; double-strand break repair protein MRE11
E Os10t0487300-01 Os10g0487300; Forkhead-associated domain containing protein. K10867 NBN; nibrin
D BRCA complex
E Os11t0615800-00 Os11g0615800; DNA repair and recombination, RecA-like domain containing protein. K04482 RAD51; DNA repair protein RAD51
E Os12t0497300-00 Os12g0497300; Similar to DNA repair protein RAD51 homolog. K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E Os11t0615800-00 Os11g0615800; DNA repair and recombination, RecA-like domain containing protein. K04482 RAD51; DNA repair protein RAD51
E Os12t0497300-00 Os12g0497300; Similar to DNA repair protein RAD51 homolog. K04482 RAD51; DNA repair protein RAD51
E Os05t0121700-01 Os05g0121700; DNA repair and recombination, RecA-like domain containing protein. K10869 RAD51L1; RAD51-like protein 1
E Os01t0578000-01 Os01g0578000; DNA repair and recombination, RecA-like domain containing protein. K10870 RAD51L2; RAD51-like protein 2
E Os01t0870300-01 Os01g0870300; Hypothetical conserved gene. K10879 XRCC2; DNA-repair protein XRCC2
E Os02t0562100-00 Os02g0562100; DNA repair and recombination, RecA-like domain containing protein. K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E Os09t0512800-00 Os09g0512800; Similar to snRK1-interacting protein 1. K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
E Os03t0851500-01 Os03g0851500; Similar to SnRK1-interacting protein 1. K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E Os07t0692600-01 Os07g0692600; SNF2-related domain containing protein. K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E Os07t0434500-01 Os07g0434500; Similar to chromatin remodeling complex subunit. K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E Os03t0165266-00 Os03g0165266; Hypothetical conserved gene. K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E Os02t0650800-00 Os02g0650800; SNF2-related domain containing protein. K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E Os02t0762800-00 Os02g0762800; Similar to ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase. K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E Os08t0289400-00 Os08g0289400; SNF2-related domain containing protein. K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E Os05t0392400-01 Os05g0392400; SNF2-related domain containing protein. K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E Os06t0255700-01 Os06g0255700; DEAD-like helicase, N-terminal domain containing protein. K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E Os08t0243866-00 Os08g0243866; Similar to chromatin remodeling complex subunit. K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E Os11t0672700-01 Os11g0672700; RecQ DNA helicase, RNA silencing K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E Os05t0150600-01 Os05g0150600; Hypothetical conserved gene. K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E Os02t0780800-01 Os02g0780800; Hypothetical conserved gene. K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E Os04t0433800-01 Os04g0433800; Similar to RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding. K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E Os04t0486800-01 Os04g0486800; Similar to predicted protein. K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E Os02t0780800-01 Os02g0780800; Hypothetical conserved gene. K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E Os04t0433800-01 Os04g0433800; Similar to RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding. K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E Os03t0165000-00 Os03g0165000; Similar to DNA topoisomerase family protein, expressed. K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E Os09t0500600-01 Os09g0500600; Similar to DNA topoisomerase III beta-1 (EC 5.99.1.2). Splice isoform 2. K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E Os04t0391000-00 Os04g0391000; Similar to OSIGBa0132D06.6 protein. K10990 RMI1; RecQ-mediated genome instability protein 1
E Os03t0684300-01 Os03g0684300; Nucleic acid binding, OB-fold, tRNA/helicase-type domain containing protein. K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E Os05t0111000-01 Os05g0111000; Similar to Gag polyprotein [Contains: Core protein p15 (Matrix protein); Core protein p24; Core protein p12]. K07466 RFA1; replication factor A1
E Os02t0776800-01 Os02g0776800; Replication protein A 70 kDa, Meiotic and somatic DNA repair K07466 RFA1; replication factor A1
E Os03t0214100-01 Os03g0214100; Replication protein A1. K07466 RFA1; replication factor A1
E Os02t0829100-01 Os02g0829100; Replication protein A 30kDa. K10739 RFA2; replication factor A2
E Os02t0633400-01 Os02g0633400; Similar to 61 kDa protein homolog. K10739 RFA2; replication factor A2
E Os01t0253600-01 Os01g0253600; Replication factor A protein 3 domain containing protein. K10740 RPA3; replication factor A3
D Protein phosphatase 4
E Os09t0284200-01 Os09g0284200; Similar to Serine/threonine protein phosphatase PP-X isozyme 2 (EC 3.1.3.16). K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E Os06t0300700-01 Os06g0300700; Protein phosphatase 4 core regulatory subunit R2 domain containing protein. K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E Os01t0337600-01 Os01g0337600; Similar to predicted protein. K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E Os02t0829400-00 Os02g0829400; Conserved hypothetical protein. K19022 AP5B1; AP-5 complex subunit beta-1
E Os12t0528300-01 Os12g0528300; Similar to Adaptor complexes medium subunit family protein, expressed. K19023 AP5M1; AP-5 complex subunit mu-1
E Os04t0626900-01 Os04g0626900; Similar to OSIGBa0117N13.4 protein. K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E Os05t0596600-01 Os05g0596600; Similar to SMC5 protein. K22803 SMC5; structural maintenance of chromosomes protein 5
E Os09t0121050-00 Os09g0121050; Similar to SMC6 protein. K22804 SMC6; structural maintenance of chromosomes protein 6
E Os11t0130300-01 Os11g0130300; Nse1 non-SMC component of SMC5-6 complex family protein. K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E Os12t0127100-00 Os12g0127100; Similar to Nse1 non-SMC component of SMC5-6 complex family protein. K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E Os05t0563500-01 Os05g0563500; Conserved hypothetical protein. K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E Os08t0510900-01 Os08g0510900; Nse4 domain containing protein. K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E Os06t0618000-01 Os06g0618000; Nse4 domain containing protein. K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E Os04t0648700-01 Os04g0648700; DNA repair nuclease, XPF-type/Helicase domain containing protein. K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E Os01t0948100-01 Os01g0948100; Restriction endonuclease, type II-like, core domain containing protein. K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E Os01t0273000-01 Os01g0273000; Similar to 26 proteasome complex subunit DSS1 (Deleted in split hand/split foot protein 1) (Split hand/foot deleted protein 1). K10881 SHFM1; 26 proteasome complex subunit DSS1
E Os11t0146550-00 Os11g0146550; Similar to holiday junction resolvase, S1x1p, URI domain nuclease. K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E Os07t0230500-00 Os07g0230500; Similar to endo/excinuclease amino terminal domain-containing protein. K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E Os09t0521900-01 Os09g0521900; Similar to Flap endonuclease GEN-like 1. K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E Os01t0182832-00 Os01g0182832; Hypothetical conserved gene. K19026 SPG11; spatacsin
E Os01t0182900-01 Os01g0182900; Conserved hypothetical protein. K19026 SPG11; spatacsin
E Os01t0593000-00 Os01g0593000; Similar to predicted protein. K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E Os11t0545600-01 Os11g0545600; Similar to chromatin modification-related protein EAF3. K11339 MORF4L1; mortality factor 4-like protein 1
E Os04t0101300-00 Os04g0101300; Similar to H0102C09.3 protein. K11339 MORF4L1; mortality factor 4-like protein 1
E Os01t0109300-01 Os01g0109300; Similar to predicted protein. K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E Os12t0443800-01 Os12g0443800; Hypothetical conserved gene. K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E Os06t0191200-01 Os06g0191200; Similar to zinc ion binding. K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E Os06t0145800-00 Os06g0145800; Similar to Whirly family nucleic acid binding protein. K26559 WHY1; single-stranded DNA-binding protein WHY1
E Os02t0158400-01 Os02g0158400; ssDNA-binding transcriptional regulator family protein. K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E Os07t0184900-01 Os07g0184900; Similar to Ku70-like protein. K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
D MRX complex
E Os04t0635900-01 Os04g0635900; DNA repair exonuclease family protein. K10865 MRE11; double-strand break repair protein MRE11
E Os08t0177600-00 Os08g0177600; Similar to double-strand break repair protein MRE11. K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E Os03t0740800-01 Os03g0740800; DNA double-strand break repair and VJ recombination XRCC4, C-terminal domain containing protein. K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E Os06t0237200-00 Os06g0237200; Similar to DNA polymerase lambda. K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E Os03t0293400-01 Os03g0293400; Similar to basic helix-loop-helix family protein. K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E Os12t0414900-00 Os12g0414900; Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E Os07t0510300-00 Os07g0510300; Conserved hypothetical protein. K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E Os10t0401100-00 Os10g0401100; Hypothetical conserved gene. K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E Os04t0397700-00 Os04g0397700; Similar to DNA binding. K11511 APITD1; centromere protein S
E Os04t0481500-00 Os04g0481500; Similar to H0510A06.6 protein. K15360 STRA13; centromere protein X
E Os01t0605300-01 Os01g0605300; Similar to Likely ubiquitin-conjugating enzyme e2. K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E Os02t0780800-01 Os02g0780800; Hypothetical conserved gene. K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E Os04t0433800-01 Os04g0433800; Similar to RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding. K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E Os03t0165000-00 Os03g0165000; Similar to DNA topoisomerase family protein, expressed. K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E Os09t0500600-01 Os09g0500600; Similar to DNA topoisomerase III beta-1 (EC 5.99.1.2). Splice isoform 2. K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E Os04t0391000-00 Os04g0391000; Similar to OSIGBa0132D06.6 protein. K10990 RMI1; RecQ-mediated genome instability protein 1
E Os03t0684300-01 Os03g0684300; Nucleic acid binding, OB-fold, tRNA/helicase-type domain containing protein. K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E Os07t0154400-01 Os07g0154400; Armadillo-type fold domain containing protein. K10891 FANCD2; fanconi anemia group D2 protein
D Downstream FA components
E Os09t0551800-00 Os09g0551800; Helicase-like, DEXD box c2 type domain containing protein. K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E Os06t0171800-01 Os06g0171800; VRR-NUC domain containing protein. K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E Os11t0615800-00 Os11g0615800; DNA repair and recombination, RecA-like domain containing protein. K04482 RAD51; DNA repair protein RAD51
E Os12t0497300-00 Os12g0497300; Similar to DNA repair protein RAD51 homolog. K04482 RAD51; DNA repair protein RAD51
E Os01t0578000-01 Os01g0578000; DNA repair and recombination, RecA-like domain containing protein. K10870 RAD51L2; RAD51-like protein 2
E Os02t0598800-00 Os02g0598800; Telomere length regulation protein, conserved domain domain containing protein. K11137 TELO2; telomere length regulation protein
E Os12t0165000-01 Os12g0165000; WD40 repeat-like domain containing protein. K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E Os01t0691700-01 Os01g0691700; Similar to Serine/threonine protein phosphatase 2A. K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E Os05t0592500-01 Os05g0592500; SIT4 phosphatase-associated protein family protein. K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E Os04t0620400-01 Os04g0620400; SIT4 phosphatase-associated protein family protein. K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E Os01t0585700-01 Os01g0585700; SIT4 phosphatase-associated protein family protein. K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E Os03t0738000-01 Os03g0738000; WD40 repeat-like domain containing protein. K23314 WRAP53; telomerase Cajal body protein 1
E Os10t0464100-01 Os10g0464100; WD40 repeat-like domain containing protein. K24752 WDR70; WD repeat-containing protein 70
E Os08t0282500-01 Os08g0282500; WD40 repeat-like domain containing protein. K24755 WDR76; WD repeat-containing protein 76
E Os08t0285200-01 Os08g0285200; WD40 repeat-like domain containing protein. K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Os01t0757800-01 Os01g0757800; DNA polymerase eta domain containing protein. K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D Os03t0616300-01 Os03g0616300; Similar to DNA polymerase kappa (EC 2.7.7.7) (DINB protein) (DINP). Splice isoform 4. K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D Os06t0691000-01 Os06g0691000; DNA-repair protein, UmuC-like domain containing protein. K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
D Os03t0791800-01 Os03g0791800; Rad6 (Ubiquitin carrier protein). K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D Os07t0166800-01 Os07g0166800; Rad6 (Ubiquitin carrier protein). K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D Os05t0182500-01 Os05g0182500; Similar to Ubiquitin carrier protein. K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D Os02t0527100-01 Os02g0527100; DEAD-like helicase, N-terminal domain containing protein. K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D Os07t0642400-00 Os07g0642400; Similar to chromatin remodeling complex subunit. K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D Os04t0684800-01 Os04g0684800; Similar to CROC-1-like protein (Fragment). K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D Os09t0297100-01 Os09g0297100; Similar to CROC-1-like protein (Fragment). K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D Os03t0712300-01 Os03g0712300; Similar to CROC-1-like protein (Fragment). K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D Os12t0605400-01 Os12g0605400; Similar to CROC-1-like protein (Fragment). K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D Os01t0673600-01 Os01g0673600; Similar to Ubiquitin-conjugating enzyme E2. K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D Os02t0805200-01 Os02g0805200; Proliferating cell nuclear antigen (PCNA) (Cyclin). K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D Os03t0345100-01 Os03g0345100; Similar to auxin response factor 75. K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D Os04t0528400-01 Os04g0528400; Similar to ABC transporter. K10903 HUS1; HUS1 checkpoint protein
D Os06t0132600-01 Os06g0132600; Repair protein Rad1/Rec1 domain containing protein. K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D Os12t0176500-01 Os12g0176500; Similar to Replication factor C subunit RFC4. K10755 RFC2_4; replication factor C subunit 2/4
D Os04t0569000-01 Os04g0569000; Similar to Replication factor C 40kDa subunit. K10755 RFC2_4; replication factor C subunit 2/4
D Os03t0792600-01 Os03g0792600; ATPase, AAA+ type, core domain containing protein. K10756 RFC3_5; replication factor C subunit 3/5
D Os10t0574500-00 Os10g0574500; DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal domain containing protein. K10756 RFC3_5; replication factor C subunit 3/5
D Os02t0775200-01 Os02g0775200; Similar to Activator 1 36 kDa subunit (Replication factor C 36 kDa subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Replication factor C subunit 5). K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D Os06t0132600-01 Os06g0132600; Repair protein Rad1/Rec1 domain containing protein. K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D Os05t0210500-00 Os05g0210500; Timeless protein domain containing protein. K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D Os02t0762200-01 Os02g0762200; Zinc finger, CCHC-type domain containing protein. K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D Os02t0598800-00 Os02g0598800; Telomere length regulation protein, conserved domain domain containing protein. K11137 TELO2; telomere length regulation protein
D Os06t0694100-01 Os06g0694100; Similar to cDNA clone:J033051C12, full insert sequence. K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
C Other check point factors
D Os06t0724700-01 Os06g0724700; Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein. K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D Os01t0106700-00 Os01g0106700; Hypothetical conserved gene. K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D Os01t0209200-01 Os01g0209200; Similar to 14-3-3 protein 7. K06630 YWHAE; 14-3-3 protein epsilon
D Os11t0609600-01 Os11g0609600; Similar to 14-3-3-like protein. K06630 YWHAE; 14-3-3 protein epsilon
D Os04t0462500-01 Os04g0462500; Similar to 14-3-3-like protein GF14-6. K06630 YWHAE; 14-3-3 protein epsilon
D Os03t0710800-01 Os03g0710800; 14-3-3-like protein S94. K06630 YWHAE; 14-3-3 protein epsilon
D Os08t0480800-01 Os08g0480800; Similar to TaWIN2. K06630 YWHAE; 14-3-3 protein epsilon
D Os11t0546900-01 Os11g0546900; Similar to TaWIN1. K06630 YWHAE; 14-3-3 protein epsilon
D Os08t0430500-01 Os08g0430500; Similar to 14-3-3-like protein S94. K06630 YWHAE; 14-3-3 protein epsilon
D Os02t0580300-01 Os02g0580300; Similar to 14-3-3 protein 6. K06630 YWHAE; 14-3-3 protein epsilon
D Os02t0135300-00 Os02g0135300; Similar to Wee1-like protein kinase. K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D Os12t0604700-01 Os12g0604700; Similar to LSTK-1-like kinase. K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D Os03t0636800-01 Os03g0636800; LSTK-1-like kinase. K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D Os02t0590800-00 Os02g0590800; Similar to Serine/threonine-protein kinase Nek6. K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D Os05t0440800-01 Os05g0440800; Serine/threonine protein kinase domain containing protein. K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D Os07t0176600-01 Os07g0176600; Similar to Kinase-like protein. K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D Os12t0621700-01 Os12g0621700; Conserved hypothetical protein. K22422 DONSON; protein downstream neighbor of Son
D Os01t0141100-01 Os01g0141100; Similar to Salt-induced AAA-Type ATPase. K12196 VPS4; vacuolar protein-sorting-associated protein 4
D Os01t0141300-00 Os01g0141300; Similar to vacuolar sorting protein 4b. K12196 VPS4; vacuolar protein-sorting-associated protein 4
D Os02t0159900-01 Os02g0159900; SKD1 protein (Vacuolar sorting protein 4b). K12196 VPS4; vacuolar protein-sorting-associated protein 4
D Os01t0681600-01 Os01g0681600; Hypothetical conserved gene. K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D Os12t0291000-00 Os12g0291000; Similar to DNA-directed DNA polymerase family protein. K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D Os02t0135700-01 Os02g0135700; DNA polymerase V family protein. K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D Os07t0467900-01 Os07g0467900; Similar to DNA primase. K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D Os09t0439000-00 Os09g0439000; Similar to predicted protein. K15340 DCLRE1A; DNA cross-link repair 1A protein
D Os08t0107600-01 Os08g0107600; DNA repair metallo-beta-lactamase domain containing protein. K15340 DCLRE1A; DNA cross-link repair 1A protein
D Os04t0401800-01 Os04g0401800; DNA repair metallo-beta-lactamase domain containing protein. K15340 DCLRE1A; DNA cross-link repair 1A protein
D Os01t0881400-00 Os01g0881400; DNA repair metallo-beta-lactamase domain containing protein. K15340 DCLRE1A; DNA cross-link repair 1A protein
D Os01t0783400-01 Os01g0783400; Similar to DNA cross-link repair protein-related. K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D Os05t0123300-00 Os05g0123300; Defects-in-morphology protein 1-like, mitochondrial domain containing protein. K17815 EXO5; exonuclease V [EC:3.1.-.-]
D Os06t0663600-01 Os06g0663600; Endonuclease V family protein. K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D Os04t0636400-01 Os04g0636400; Similar to H0410G08.16 protein. K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D Os01t0128100-01 Os01g0128100; Similar to Bifunctional nuclease (Fragment). K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D Os01t0128200-01 Os01g0128200; Similar to Nuclease I. K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D Os04t0652700-01 Os04g0652700; Similar to Nuclease PA3. K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D Os05t0247900-01 Os05g0247900; DEAD-like helicase, N-terminal domain containing protein. K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D Os10t0466300-01 Os10g0466300; Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica. K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D Os04t0348300-01 Os04g0348300; Similar to OSIGBa0130K07.8 protein. K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D Os03t0339100-01 Os03g0339100; Similar to PRL1 protein. K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D Os03t0669100-01 Os03g0669100; Similar to predicted protein. K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Os06t0168600-01 Os06g0168600; Ribonucleotide reductase, Chloroplast biogenesis K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D Os02t0804900-01 Os02g0804900; Ribonucleotide reductase, Chloroplast biogenesis K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D Os06t0127900-01 Os06g0127900; Ribonucleotide reductase, Chloroplast biogenesis K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D Os06t0257450-01 Os06g0257450; Ribonucleotide reductase, Chloroplast biogenesis K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Os10t0167600-01 Os10g0167600; Similar to CPD photolyase. K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Os04t0673400-01 Os04g0673400; Similar to Uracil-DNA glycosylase. K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Os03t0248250-00 Os03g0248250; Hypothetical conserved gene. K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E Os05t0567500-01 Os05g0567500; HhH-GPD domain domain containing protein. K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E Os05t0579100-01 Os05g0579100; HhH-GPD domain domain containing protein. K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E Os02t0774500-01 Os02g0774500; Similar to DNA-3-methyladenine glycosylase (EC 3.2.2.21) (3-methyladenine DNA glycosidase). K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Os12t0211400-00 Os12g0211400; A/G-specific adenine glycosylase MutY, bacterial form domain containing protein. K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Os12t0212100-00 Os12g0212100; Similar to A/G-specific adenine DNA glycosylase. K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Os01t0799500-01 Os01g0799500; Methyladenine glycosylase domain containing protein. K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Os08t0489300-01 Os08g0489300; Methyladenine glycosylase domain containing protein. K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Os06t0649800-01 Os06g0649800; Similar to DNA-3-methyladenine glycosylase I. K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Os04t0501200-01 Os04g0501200; Similar to H0311C03.4 protein. K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Os09t0420300-01 Os09g0420300; Methyladenine glycosylase domain containing protein. K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Os08t0304900-01 Os08g0304900; Similar to AtMMH-1 protein (F6D8.28 protein). K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Os06t0643600-01 Os06g0643600; DNA glycosylase/AP lyase domain containing protein. K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Os06t0237900-00 Os06g0237900; Conserved hypothetical protein. K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Os01t0801000-01 Os01g0801000; Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18). K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E Os01t0801100-01 Os01g0801100; Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18). K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E Os08t0175300-01 Os08g0175300; PolI-like DNA polymerase. K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Os08t0175300-01 Os08g0175300; PolI-like DNA polymerase. K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Os04t0680700-01 Os04g0680700; DNA mismatch repair protein MutS, core domain containing protein. K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E Os01t0642900-01 Os01g0642900; Nucleic acid-binding, OB-fold domain containing protein. K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Os11t0302700-01 Os11g0302700; RecA bacterial DNA recombination family protein. K03553 recA; recombination protein RecA
E Os01t0901200-01 Os01g0901200; Similar to RecA protein (Fragment). K03553 recA; recombination protein RecA
E Os03t0639700-01 Os03g0639700; Similar to protein recA. K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E Os11t0302700-01 Os11g0302700; RecA bacterial DNA recombination family protein. K03553 recA; recombination protein RecA
E Os01t0901200-01 Os01g0901200; Similar to RecA protein (Fragment). K03553 recA; recombination protein RecA
E Os03t0639700-01 Os03g0639700; Similar to protein recA. K03553 recA; recombination protein RecA
E Os06t0151600-01 Os06g0151600; DNA repair protein RadA family protein. K04485 radA; DNA repair protein RadA/Sms
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Os01t0268300-01 Os01g0268300; Similar to DNA gyrase B subunit. K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F Os07t0681600-01 Os07g0681600; DNA helicase, ATP-dependent, RecQ type domain containing protein. K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D Os11t0302700-01 Os11g0302700; RecA bacterial DNA recombination family protein. K03553 recA; recombination protein RecA
D Os01t0901200-01 Os01g0901200; Similar to RecA protein (Fragment). K03553 recA; recombination protein RecA
D Os03t0639700-01 Os03g0639700; Similar to protein recA. K03553 recA; recombination protein RecA
D Os01t0642900-01 Os01g0642900; Nucleic acid-binding, OB-fold domain containing protein. K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D Os03t0669100-01 Os03g0669100; Similar to predicted protein. K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024