+F Repair protein KO #

  DNA Repair and Recombination Proteins - Desulfotalea psychrophila

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DP0920 probable methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DP2576 probable DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DP2585 probable uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DP2463 related to A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D DP2521 related to 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DP2873 probable 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DP0073 related to ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DP2607 probable deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DP0920 probable methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DP2576 probable DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DP2585 probable uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DP2463 related to A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DP0164 probable DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DP0913 probable formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D AP endonucleases E DP2416 probable exodeoxyribonuclease (ExoA) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E DP0053 probable endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E DP1929 related to single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E DP1006 related to NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E DP1087 probable DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E DP0116 probable excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A E DP2765 probable excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B E DP2478 related to excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C E DP2879 Probable ATP-dependent DNA helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DP0882 related to ATP-dependent DNA helicase II (Rep) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DP1087 probable DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E DP1006 related to NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F DP1117 probable DNA-directed RNA polymerase, beta-subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F DP1118 probable DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F DP1152 probable DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F DP1481 probable DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F DP0282 related to transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DP0840 probable DNA mismatch repair protein (MutS) K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E DP1966 probable DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL E DP1967 related to DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E DP1945 probable exodeoxyribonuclease VII, large chain K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E DP2698 related to exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E DP1663 related to DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E DP0648 probable DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DP0888 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E DP0784 related to DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E DP0965 probable DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DP1431 related to DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E DP1006 related to NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E DP2879 Probable ATP-dependent DNA helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DP0882 related to ATP-dependent DNA helicase II (Rep) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DP2579 probable single-strand binding protein (Ssb) K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DP1344 related to exodeoxyribonuclease V, beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E DP1343 related to exodeoxyribonuclease V, gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E DP1345 related to exodeoxyribonuclease V, alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E DP2958 probable RecA protein K03553 recA; recombination protein RecA E DP2206 related to primosomal protein N' (PriA) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E DP0526 related to ATP-dependent dsDNA exonuclease (SBCC) K03546 sbcC; DNA repair protein SbcC/Rad50 E DP0527 related to ATP-dependent dsDNA exonuclease (SbcD) K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E DP2958 probable RecA protein K03553 recA; recombination protein RecA E DP0719 probable DNA repair protein (RadA) K04485 radA; DNA repair protein RadA/Sms E DP1929 related to single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DP0712 unknown protein K03554 rdgC; recombination associated protein RdgC D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E DP0526 related to ATP-dependent dsDNA exonuclease (SBCC) K03546 sbcC; DNA repair protein SbcC/Rad50 E DP0527 related to ATP-dependent dsDNA exonuclease (SbcD) K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DP0650 probable DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DP0649 probable DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F DP2169 probable DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DP1929 related to single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DP1006 related to NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F DP1422 related to integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F DP2783 probable integration host factor, alpha-subunit K04764 ihfA; integration host factor subunit alpha F DP0818 probable DNA-binding protein HU-beta K05788 ihfB; integration host factor subunit beta F DP0900 probable DNA-binding protein HU K05788 ihfB; integration host factor subunit beta E Supressor F DP0406 probable ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F DP0116 probable excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A F DP2765 probable excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B F DP0556 related to DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DP2198 probable DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D DP2958 probable RecA protein K03553 recA; recombination protein RecA D DP2579 probable single-strand binding protein (Ssb) K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D DP1744 related to ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D DP2521 related to 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DP2873 probable 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DP0073 related to ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DP2607 probable deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DP2827 probable ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D DP2611 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024