+D	GENES	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a> &nbsp; KEGG Orthology (KO) - Devosia rhizoryzae </h2>
%<!-- w=600, -->
!
A09100 Metabolism
B
B  09101 Carbohydrate metabolism
C    00010 Glycolysis / Gluconeogenesis [PATH:drh00010]
D      JI748_06770 pgi; glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      JI748_08655 class 1 fructose-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      JI748_07800 glpX; class II fructose-bisphosphatase	K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D      JI748_01350 fructose-bisphosphate aldolase class I	K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D      JI748_06190 triose-phosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D      JI748_01390 gap; type I glyceraldehyde-3-phosphate dehydrogenase	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      JI748_01355 phosphoglycerate kinase	K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D      JI748_15350 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D      JI748_06215 eno; phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      JI748_00665 pyk; pyruvate kinase	K00873 PK; pyruvate kinase [EC:2.7.1.40]
D      JI748_09940 pyruvate, phosphate dikinase	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      JI748_06385 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      JI748_06375 pyruvate dehydrogenase complex E1 component subunit beta	K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D      JI748_06370 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D      JI748_01800 dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06355 lpdA; dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_05275 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_04320 acs; acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      JI748_14805 galactose mutarotase	K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D      JI748_03690 alpha-D-glucose phosphate-specific phosphoglucomutase	K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D      JI748_13455 pckA; phosphoenolpyruvate carboxykinase (ATP)	K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D      JI748_16370 hypothetical protein	K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
C    00020 Citrate cycle (TCA cycle) [PATH:drh00020]
D      JI748_05835 gltA; citrate (Si)-synthase	K01647 CS; citrate synthase [EC:2.3.3.1]
D      JI748_16515 prpC; 2-methylcitrate synthase	K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D      JI748_15620 acnA; aconitate hydratase AcnA	K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D      JI748_04630 NADP-dependent isocitrate dehydrogenase	K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D      JI748_01775 2-oxoglutarate dehydrogenase E1 component	K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D      JI748_01780 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D      JI748_01800 dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06355 lpdA; dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_01770 sucD; succinate--CoA ligase subunit alpha	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      JI748_01765 sucC; ADP-forming succinate--CoA ligase subunit beta	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      JI748_16105 succinate dehydrogenase flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      JI748_16115 succinate dehydrogenase iron-sulfur subunit	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      JI748_16095 sdhC; succinate dehydrogenase, cytochrome b556 subunit	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      JI748_16100 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein	K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D      JI748_16845 fumC; class II fumarate hydratase	K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D      JI748_01760 mdh; malate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      JI748_16780 pyc; pyruvate carboxylase	K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D      JI748_13455 pckA; phosphoenolpyruvate carboxykinase (ATP)	K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D      JI748_06385 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      JI748_06375 pyruvate dehydrogenase complex E1 component subunit beta	K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D      JI748_06370 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C    00030 Pentose phosphate pathway [PATH:drh00030]
D      JI748_06770 pgi; glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      JI748_10425 zwf; glucose-6-phosphate dehydrogenase	K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D      JI748_10420 pgl; 6-phosphogluconolactonase	K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D      JI748_04925 gndA; NADP-dependent phosphogluconate dehydrogenase	K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D      JI748_04810 ribulose-phosphate 3-epimerase	K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D      JI748_00125 transketolase family protein	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_00130 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_01395 tkt; transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_12690 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_12695 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_10710 fsa; fructose-6-phosphate aldolase	K00616 TALDO1; transaldolase [EC:2.2.1.2]
D      JI748_08790 rpiA; ribose-5-phosphate isomerase RpiA	K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D      JI748_12495 deoC; deoxyribose-phosphate aldolase	K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D      JI748_14145 ribokinase	K00852 rbsK; ribokinase [EC:2.7.1.15]
D      JI748_12480 phosphopentomutase	K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D      JI748_03690 alpha-D-glucose phosphate-specific phosphoglucomutase	K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D      JI748_13565 phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D      JI748_13970 phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D      JI748_02380 ribose-phosphate pyrophosphokinase	K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D      JI748_10415 phosphogluconate dehydratase	K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D      JI748_00300 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D      JI748_12180 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D      JI748_16550 SMP-30/gluconolactonase/LRE family protein	K01053 gnl; gluconolactonase [EC:3.1.1.17]
D      JI748_04915 gluconokinase	K00851 idnK; gluconokinase [EC:2.7.1.12]
D      JI748_02830 sugar kinase	K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D      JI748_13580 glycerate kinase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      JI748_01350 fructose-bisphosphate aldolase class I	K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D      JI748_08655 class 1 fructose-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      JI748_07800 glpX; class II fructose-bisphosphatase	K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
C    00040 Pentose and glucuronate interconversions [PATH:drh00040]
D      JI748_01835 cupin domain-containing protein	K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D      JI748_01825 kduI; 5-dehydro-4-deoxy-D-glucuronate isomerase	K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D      JI748_01830 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D      JI748_10830 uxaC; glucuronate isomerase	K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D      JI748_01850 uxuA; mannonate dehydratase	K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D      JI748_02835 mannitol dehydrogenase family protein	K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D      JI748_09520 UDP-glucose/GDP-mannose dehydrogenase family protein	K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D      JI748_15200 galU; UTP--glucose-1-phosphate uridylyltransferase GalU	K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D      JI748_04810 ribulose-phosphate 3-epimerase	K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D      JI748_14795 xylB; xylulokinase	K00854 xylB; xylulokinase [EC:2.7.1.17]
D      JI748_00115 TIM barrel protein	K01805 xylA; xylose isomerase [EC:5.3.1.5]
D      JI748_14790 xylA; xylose isomerase	K01805 xylA; xylose isomerase [EC:5.3.1.5]
D      JI748_05300 FAD-binding protein	K00594 xyoA; alditol oxidase [EC:1.1.3.41]
D      JI748_09320 rhaI; L-rhamnose catabolism isomerase	K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D      JI748_12235 SDR family oxidoreductase	K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175]
D      JI748_05870 dihydroxy-acid dehydratase family protein	K22186 xylD; xylonate dehydratase [EC:4.2.1.82]
D      JI748_02950 aldehyde dehydrogenase family protein	K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-]
D      JI748_12965 FGGY-family carbohydrate kinase	K00875 rbtK; D-ribulokinase [EC:2.7.1.47]
C    00051 Fructose and mannose metabolism [PATH:drh00051]
D      JI748_00380 carbohydrate kinase	K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D      JI748_05035 phosphomannomutase	K01840 manB; phosphomannomutase [EC:5.4.2.8]
D      JI748_05100 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D      JI748_05050 gmd; GDP-mannose 4,6-dehydratase	K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D      JI748_05055 GDP-L-fucose synthase	K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D      JI748_16410 aldo/keto reductase	K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D      JI748_16415 L-fuconate dehydratase	K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68]
D      JI748_16420 SDR family oxidoreductase	K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D      JI748_09320 rhaI; L-rhamnose catabolism isomerase	K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D      JI748_08655 class 1 fructose-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      JI748_07800 glpX; class II fructose-bisphosphatase	K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D      JI748_05300 FAD-binding protein	K00594 xyoA; alditol oxidase [EC:1.1.3.41]
D      JI748_00115 TIM barrel protein	K01805 xylA; xylose isomerase [EC:5.3.1.5]
D      JI748_14790 xylA; xylose isomerase	K01805 xylA; xylose isomerase [EC:5.3.1.5]
D      JI748_12960 mannitol dehydrogenase family protein	K00045 E1.1.1.67; mannitol 2-dehydrogenase [EC:1.1.1.67]
D      JI748_01350 fructose-bisphosphate aldolase class I	K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D      JI748_06190 triose-phosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D      JI748_13435 PTS sugar transporter subunit IIA	K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C    00052 Galactose metabolism [PATH:drh00052]
D      JI748_14805 galactose mutarotase	K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D      JI748_11610 NAD(P)-dependent oxidoreductase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      JI748_15205 galE; UDP-glucose 4-epimerase GalE	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      JI748_15200 galU; UTP--glucose-1-phosphate uridylyltransferase GalU	K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D      JI748_03690 alpha-D-glucose phosphate-specific phosphoglucomutase	K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D      JI748_05850 beta-galactosidase	K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D      JI748_13375 glf; UDP-galactopyranose mutase	K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D      JI748_02355 alpha-glucosidase/alpha-galactosidase	K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D      JI748_13590 Gfo/Idh/MocA family oxidoreductase	K00035 gal; D-galactose 1-dehydrogenase [EC:1.1.1.48]
D      JI748_05865 2-dehydro-3-deoxygalactonokinase	K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D      JI748_05860 2-dehydro-3-deoxy-6-phosphogalactonate aldolase	K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
D      JI748_10740 alpha-glucosidase	K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C    00053 Ascorbate and aldarate metabolism [PATH:drh00053]
D      JI748_09520 UDP-glucose/GDP-mannose dehydrogenase family protein	K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D      JI748_16550 SMP-30/gluconolactonase/LRE family protein	K01053 gnl; gluconolactonase [EC:3.1.1.17]
D      JI748_16410 aldo/keto reductase	K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C    00500 Starch and sucrose metabolism [PATH:drh00500]
D      JI748_10740 alpha-glucosidase	K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D      JI748_15200 galU; UTP--glucose-1-phosphate uridylyltransferase GalU	K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D      JI748_10700 beta-glucosidase	K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D      JI748_12755 bcsA; UDP-forming cellulose synthase catalytic subunit	K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D      JI748_16370 hypothetical protein	K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D      JI748_03680 glgC; glucose-1-phosphate adenylyltransferase	K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D      JI748_03685 glgA; glycogen synthase GlgA	K00703 glgA; starch synthase [EC:2.4.1.21]
D      JI748_03675 glgB; 1,4-alpha-glucan branching protein GlgB	K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D      JI748_12985 malto-oligosyltrehalose trehalohydrolase	K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D      JI748_13175 treZ; malto-oligosyltrehalose trehalohydrolase	K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D      JI748_03670 glycogen/starch/alpha-glucan phosphorylase	K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D      JI748_03695 glgX; glycogen debranching protein GlgX	K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D      JI748_04350 treY; malto-oligosyltrehalose synthase	K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
D      JI748_08265 treZ; malto-oligosyltrehalose trehalohydrolase	K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
D      JI748_02100 trehalose-6-phosphate synthase	K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D      JI748_02105 otsB; trehalose-phosphatase	K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D      JI748_03690 alpha-D-glucose phosphate-specific phosphoglucomutase	K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D      JI748_06770 pgi; glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      JI748_00380 carbohydrate kinase	K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C    00520 Amino sugar and nucleotide sugar metabolism [PATH:drh00520]
D      JI748_04325 glycoside hydrolase family 3 protein	K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D      JI748_14515 glycoside hydrolase family 3 protein	K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D      JI748_13080 beta-N-acetylhexosaminidase	K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D      JI748_08200 nagA; N-acetylglucosamine-6-phosphate deacetylase	K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D      JI748_11820 N-acetylglucosamine-6-phosphate deacetylase	K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D      JI748_11825 glucosamine-6-phosphate deaminase	K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D      JI748_16315 6-phosphogluconolactonase	K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D      JI748_10430 hypothetical protein	K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D      JI748_00380 carbohydrate kinase	K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D      JI748_05200 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      JI748_06735 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      JI748_08205 SIS domain-containing protein	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      JI748_00930 phosphoglucosamine mutase	K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D      JI748_06740 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D      JI748_08215 N-acetylmuramic acid 6-phosphate etherase	K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D      JI748_11300 murQ; N-acetylmuramic acid 6-phosphate etherase	K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D      JI748_11270 anhydro-N-acetylmuramic acid kinase	K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D      JI748_14395 nucleotidyltransferase family protein	K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D      JI748_11940 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase	K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D      JI748_06095 murB; UDP-N-acetylmuramate dehydrogenase	K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D      JI748_11330 putative N-acetylmannosamine-6-phosphate 2-epimerase	K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D      JI748_11445 SDR family NAD(P)-dependent oxidoreductase	K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D      JI748_11530 neuC; UDP-N-acetylglucosamine 2-epimerase (hydrolyzing)	K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184]
D      JI748_11510 neuB; N-acetylneuraminate synthase	K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101]
D      JI748_12890 alpha-N-arabinofuranosidase	K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D      JI748_09555 SDR family oxidoreductase	K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D      JI748_14785 glycoside hydrolase family 43 protein	K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D      JI748_03690 alpha-D-glucose phosphate-specific phosphoglucomutase	K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D      JI748_15200 galU; UTP--glucose-1-phosphate uridylyltransferase GalU	K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D      JI748_09520 UDP-glucose/GDP-mannose dehydrogenase family protein	K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D      JI748_11610 NAD(P)-dependent oxidoreductase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      JI748_15205 galE; UDP-glucose 4-epimerase GalE	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      JI748_13375 glf; UDP-galactopyranose mutase	K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D      JI748_13435 PTS sugar transporter subunit IIA	K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D      JI748_06770 pgi; glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      JI748_05035 phosphomannomutase	K01840 manB; phosphomannomutase [EC:5.4.2.8]
D      JI748_05100 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D      JI748_05050 gmd; GDP-mannose 4,6-dehydratase	K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D      JI748_05055 GDP-L-fucose synthase	K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D      JI748_09530 GDP-mannose 4,6-dehydratase	K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
D      JI748_03680 glgC; glucose-1-phosphate adenylyltransferase	K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C    00620 Pyruvate metabolism [PATH:drh00620]
D      JI748_04320 acs; acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      JI748_06385 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      JI748_06375 pyruvate dehydrogenase complex E1 component subunit beta	K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D      JI748_06370 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D      JI748_01800 dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06355 lpdA; dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_05275 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D      JI748_00665 pyk; pyruvate kinase	K00873 PK; pyruvate kinase [EC:2.7.1.40]
D      JI748_17075 acetyl-CoA carboxylase carboxyltransferase subunit alpha	K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D      JI748_05910 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein	K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D      JI748_05905 accC; acetyl-CoA carboxylase biotin carboxylase subunit	K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D      JI748_14405 acetyl-CoA carboxylase carboxyltransferase subunit beta	K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_00320 alpha-hydroxy-acid oxidizing protein	K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D      JI748_13925 FAD-binding oxidoreductase	K18930 dld; D-lactate dehydrogenase
D      JI748_07730 VOC family protein	K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D      JI748_12470 VOC family protein	K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D      JI748_16865 gloB; hydroxyacylglutathione hydrolase	K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D      JI748_11220 glyoxylate/hydroxypyruvate reductase A	K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D      JI748_12390 glyoxylate/hydroxypyruvate reductase A	K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D      JI748_06400 NADP-dependent malic enzyme	K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D      JI748_16780 pyc; pyruvate carboxylase	K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D      JI748_01760 mdh; malate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      JI748_16845 fumC; class II fumarate hydratase	K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D      JI748_13455 pckA; phosphoenolpyruvate carboxykinase (ATP)	K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D      JI748_09940 pyruvate, phosphate dikinase	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      JI748_02195 malate synthase G	K01638 aceB; malate synthase [EC:2.3.3.9]
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      JI748_04260 2-isopropylmalate synthase	K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D      JI748_08715 citramalate synthase	K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C    00630 Glyoxylate and dicarboxylate metabolism [PATH:drh00630]
D      JI748_04320 acs; acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      JI748_02195 malate synthase G	K01638 aceB; malate synthase [EC:2.3.3.9]
D      JI748_01760 mdh; malate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      JI748_05835 gltA; citrate (Si)-synthase	K01647 CS; citrate synthase [EC:2.3.3.1]
D      JI748_16515 prpC; 2-methylcitrate synthase	K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D      JI748_15620 acnA; aconitate hydratase AcnA	K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      JI748_13915 D-glycerate dehydrogenase	K00015 gyaR; glyoxylate reductase [EC:1.1.1.26]
D      JI748_11220 glyoxylate/hydroxypyruvate reductase A	K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D      JI748_12390 glyoxylate/hydroxypyruvate reductase A	K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D      JI748_11695 aminotransferase class V-fold PLP-dependent enzyme	K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D      JI748_07220 glnA; type I glutamate--ammonia ligase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      JI748_08065 serine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      JI748_10135 gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA	K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D      JI748_10140 gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB	K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D      JI748_10125 gcvT; glycine cleavage system aminomethyltransferase GcvT	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      JI748_01800 dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06355 lpdA; dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_10130 gcvH; glycine cleavage system protein GcvH	K02437 gcvH; glycine cleavage system H protein
D      JI748_13580 glycerate kinase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      JI748_00300 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D      JI748_10890 alpha/beta hydrolase	K01432 AFMID; arylformamidase [EC:3.5.1.9]
D      JI748_16590 purU; formyltetrahydrofolate deformylase	K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C    00640 Propanoate metabolism [PATH:drh00640]
D      JI748_04320 acs; acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      JI748_01800 dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06355 lpdA; dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_08620 oxidoreductase	K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D      JI748_00595 enoyl-CoA hydratase/isomerase family protein	K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D      JI748_17075 acetyl-CoA carboxylase carboxyltransferase subunit alpha	K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D      JI748_05910 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein	K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D      JI748_05905 accC; acetyl-CoA carboxylase biotin carboxylase subunit	K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D      JI748_14405 acetyl-CoA carboxylase carboxyltransferase subunit beta	K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D      JI748_13665 aspartate aminotransferase family protein	K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D      JI748_01765 sucC; ADP-forming succinate--CoA ligase subunit beta	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      JI748_01770 sucD; succinate--CoA ligase subunit alpha	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      JI748_13670 CoA-acylating methylmalonate-semialdehyde dehydrogenase	K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D      JI748_16515 prpC; 2-methylcitrate synthase	K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D      JI748_16535 MmgE/PrpD family protein	K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D      JI748_16510 prpB; methylisocitrate lyase	K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D      JI748_16730 methylglyoxal synthase	K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
C    00650 Butanoate metabolism [PATH:drh00650]
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      JI748_00595 enoyl-CoA hydratase/isomerase family protein	K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D      JI748_16105 succinate dehydrogenase flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      JI748_16115 succinate dehydrogenase iron-sulfur subunit	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      JI748_16095 sdhC; succinate dehydrogenase, cytochrome b556 subunit	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      JI748_16100 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein	K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D      JI748_10885 NAD-dependent succinate-semialdehyde dehydrogenase	K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D      JI748_04170 acetolactate synthase 3 large subunit	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      JI748_04175 ilvN; acetolactate synthase small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C    00660 C5-Branched dibasic acid metabolism [PATH:drh00660]
D      JI748_04170 acetolactate synthase 3 large subunit	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      JI748_04175 ilvN; acetolactate synthase small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D      JI748_01765 sucC; ADP-forming succinate--CoA ligase subunit beta	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      JI748_01770 sucD; succinate--CoA ligase subunit alpha	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      JI748_12070 RraA family protein	K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D      JI748_15555 leuC; 3-isopropylmalate dehydratase large subunit	K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D      JI748_15900 leuD; 3-isopropylmalate dehydratase small subunit	K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D      JI748_15890 leuB; 3-isopropylmalate dehydrogenase	K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C    00562 Inositol phosphate metabolism [PATH:drh00562]
D      JI748_01335 inositol monophosphatase	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D      JI748_09790 inositol monophosphatase	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D      JI748_10260 3'(2'),5'-bisphosphate nucleotidase CysQ	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D      JI748_09475 inositol-3-phosphate synthase	K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D      JI748_13670 CoA-acylating methylmalonate-semialdehyde dehydrogenase	K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D      JI748_06190 triose-phosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B  09102 Energy metabolism
C    00190 Oxidative phosphorylation [PATH:drh00190]
D      JI748_06920 NADH-quinone oxidoreductase subunit A	K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D      JI748_06915 NADH-quinone oxidoreductase subunit B	K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D      JI748_06910 NADH-quinone oxidoreductase subunit C	K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D      JI748_06905 NADH-quinone oxidoreductase subunit D	K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D      JI748_06900 nuoE; NADH-quinone oxidoreductase subunit NuoE	K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D      JI748_06895 nuoF; NADH-quinone oxidoreductase subunit NuoF	K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D      JI748_06890 NADH-quinone oxidoreductase subunit G	K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D      JI748_06885 nuoH; NADH-quinone oxidoreductase subunit NuoH	K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D      JI748_06880 nuoI; NADH-quinone oxidoreductase subunit NuoI	K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D      JI748_06875 NADH-quinone oxidoreductase subunit J	K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D      JI748_06870 nuoK; NADH-quinone oxidoreductase subunit NuoK	K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D      JI748_06865 nuoL; NADH-quinone oxidoreductase subunit L	K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D      JI748_06860 NADH-quinone oxidoreductase subunit M	K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D      JI748_06855 nuoN; NADH-quinone oxidoreductase subunit NuoN	K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D      JI748_08870 NAD(P)/FAD-dependent oxidoreductase	K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D      JI748_16105 succinate dehydrogenase flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      JI748_16115 succinate dehydrogenase iron-sulfur subunit	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      JI748_16095 sdhC; succinate dehydrogenase, cytochrome b556 subunit	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      JI748_16100 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein	K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D      JI748_02290 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit	K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D      JI748_02295 cytochrome b N-terminal domain-containing protein	K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D      JI748_02300 cytochrome c1	K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D      JI748_10205 protoheme IX farnesyltransferase	K02257 COX10; heme o synthase [EC:2.5.1.141]
D      JI748_10190 cytochrome c oxidase subunit 3	K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D      JI748_10210 ctaD; cytochrome c oxidase subunit I	K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D      JI748_13155 ctaD; cytochrome c oxidase subunit I	K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D      JI748_12205 ctaD; cytochrome c oxidase subunit I	K15408 coxAC; cytochrome c oxidase subunit I+III [EC:7.1.1.9]
D      JI748_10215 coxB; cytochrome c oxidase subunit II	K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D      JI748_12200 coxB; cytochrome c oxidase subunit II	K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D      JI748_13160 coxB; cytochrome c oxidase subunit II	K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D      JI748_10195 cytochrome c oxidase assembly protein	K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D      JI748_07915 COX15/CtaA family protein	K02259 COX15; heme a synthase [EC:1.17.99.9]
D      JI748_09355 cytochrome ubiquinol oxidase subunit I	K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D      JI748_09350 cydB; cytochrome d ubiquinol oxidase subunit II	K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D      JI748_09345 cydX; cytochrome bd-I oxidase subunit CydX	K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D      JI748_12385 c-type cytochrome	K08738 CYC; cytochrome c
D      JI748_16155 F0F1 ATP synthase subunit alpha	K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D      JI748_16165 atpD; F0F1 ATP synthase subunit beta	K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D      JI748_16160 F0F1 ATP synthase subunit gamma	K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D      JI748_16150 F0F1 ATP synthase subunit delta	K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D      JI748_16170 F0F1 ATP synthase subunit epsilon	K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D      JI748_10105 F0F1 ATP synthase subunit A	K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D      JI748_10115 ATP F0F1 synthase subunit B	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      JI748_10120 ATP F0F1 synthase subunit B	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      JI748_10110 F0F1 ATP synthase subunit C	K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D      JI748_15740 ppa; inorganic diphosphatase	K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D      JI748_07705 HAD hydrolase-like protein	K06019 ppaX; pyrophosphatase PpaX [EC:3.6.1.1]
D      JI748_06425 RNA degradosome polyphosphate kinase	K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D      JI748_13040 ppk2; polyphosphate kinase 2	K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C    00195 Photosynthesis
C    00196 Photosynthesis - antenna proteins
C    00710 Carbon fixation by Calvin cycle [PATH:drh00710]
D      JI748_01355 phosphoglycerate kinase	K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D      JI748_01390 gap; type I glyceraldehyde-3-phosphate dehydrogenase	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      JI748_01350 fructose-bisphosphate aldolase class I	K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D      JI748_08655 class 1 fructose-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      JI748_07800 glpX; class II fructose-bisphosphatase	K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D      JI748_00125 transketolase family protein	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_00130 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_01395 tkt; transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_12690 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_12695 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_08790 rpiA; ribose-5-phosphate isomerase RpiA	K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D      JI748_06190 triose-phosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D      JI748_04810 ribulose-phosphate 3-epimerase	K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D      JI748_10710 fsa; fructose-6-phosphate aldolase	K00616 TALDO1; transaldolase [EC:2.2.1.2]
D      JI748_13455 pckA; phosphoenolpyruvate carboxykinase (ATP)	K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D      JI748_09940 pyruvate, phosphate dikinase	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      JI748_06400 NADP-dependent malic enzyme	K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D      JI748_01760 mdh; malate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C    00720 Other carbon fixation pathways [PATH:drh00720]
D      JI748_09940 pyruvate, phosphate dikinase	K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D      JI748_16780 pyc; pyruvate carboxylase	K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D      JI748_01760 mdh; malate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      JI748_16845 fumC; class II fumarate hydratase	K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D      JI748_16105 succinate dehydrogenase flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      JI748_16115 succinate dehydrogenase iron-sulfur subunit	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      JI748_16095 sdhC; succinate dehydrogenase, cytochrome b556 subunit	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      JI748_16100 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein	K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D      JI748_01770 sucD; succinate--CoA ligase subunit alpha	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      JI748_01765 sucC; ADP-forming succinate--CoA ligase subunit beta	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      JI748_04630 NADP-dependent isocitrate dehydrogenase	K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D      JI748_15620 acnA; aconitate hydratase AcnA	K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D      JI748_17075 acetyl-CoA carboxylase carboxyltransferase subunit alpha	K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D      JI748_05910 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein	K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D      JI748_05905 accC; acetyl-CoA carboxylase biotin carboxylase subunit	K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D      JI748_14405 acetyl-CoA carboxylase carboxyltransferase subunit beta	K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D      JI748_06230 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D      JI748_03895 metF; methylenetetrahydrofolate reductase [NAD(P)H]	K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D      JI748_04320 acs; acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C    00680 Methane metabolism [PATH:drh00680]
D      JI748_03070 PQQ-binding-like beta-propeller repeat protein	K23995 xoxF; lanthanide-dependent methanol dehydrogenase [EC:1.1.2.10]
D      JI748_05275 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D      JI748_08065 serine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      JI748_11695 aminotransferase class V-fold PLP-dependent enzyme	K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D      JI748_13580 glycerate kinase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      JI748_06215 eno; phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      JI748_01760 mdh; malate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      JI748_01350 fructose-bisphosphate aldolase class I	K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D      JI748_08655 class 1 fructose-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      JI748_07800 glpX; class II fructose-bisphosphatase	K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D      JI748_04320 acs; acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      JI748_15350 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D      JI748_00890 phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      JI748_11635 C-terminal binding protein	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      JI748_00895 phosphoserine transaminase	K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D      JI748_04150 serB; phosphoserine phosphatase SerB	K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D      JI748_01615 cofE; coenzyme F420-0:L-glutamate ligase	K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
C    00910 Nitrogen metabolism [PATH:drh00910]
D      JI748_07220 glnA; type I glutamate--ammonia ligase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      JI748_00425 gltB; glutamate synthase large subunit	K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D      JI748_00415 glutamate synthase subunit beta	K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D      JI748_16060 carbonic anhydrase	K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C    00920 Sulfur metabolism [PATH:drh00920]
D      JI748_05630 sulfate ABC transporter substrate-binding protein	K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D      JI748_03595 sulfate ABC transporter substrate-binding protein	K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D      JI748_03605 cysT; sulfate ABC transporter permease subunit CysT	K02046 cysU; sulfate/thiosulfate transport system permease protein
D      JI748_05625 cysT; sulfate ABC transporter permease subunit CysT	K02046 cysU; sulfate/thiosulfate transport system permease protein
D      JI748_03610 cysW; sulfate ABC transporter permease subunit CysW	K02047 cysW; sulfate/thiosulfate transport system permease protein
D      JI748_05620 cysW; sulfate ABC transporter permease subunit CysW	K02047 cysW; sulfate/thiosulfate transport system permease protein
D      JI748_03615 sulfate/molybdate ABC transporter ATP-binding protein	K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D      JI748_12025 tauA; taurine ABC transporter substrate-binding protein	K15551 tauA; taurine transport system substrate-binding protein
D      JI748_12015 ABC transporter permease subunit	K15552 tauC; taurine transport system permease protein
D      JI748_12020 ATP-binding cassette domain-containing protein	K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D      JI748_12010 ssuD; FMNH2-dependent alkanesulfonate monooxygenase	K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D      JI748_05265 cysN; sulfate adenylyltransferase subunit CysN	K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D      JI748_05260 cysD; sulfate adenylyltransferase subunit CysD	K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D      JI748_08670 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ	K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D      JI748_04390 phosphoadenylyl-sulfate reductase	K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D      JI748_16460 soxA; sulfur oxidation c-type cytochrome SoxA	K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D      JI748_16475 soxX; sulfur oxidation c-type cytochrome SoxX	K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D      JI748_16470 sulfur oxidation protein SoxY	K17226 soxY; sulfur-oxidizing protein SoxY
D      JI748_16465 soxZ; thiosulfate oxidation carrier complex protein SoxZ	K17227 soxZ; sulfur-oxidizing protein SoxZ
D      JI748_04385 nitrite/sulfite reductase	K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D      JI748_16480 FAD-dependent oxidoreductase	K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3]
D      JI748_16485 c-type cytochrome	K17230 fccA; cytochrome subunit of sulfide dehydrogenase
D      JI748_01980 sseA; 3-mercaptopyruvate sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      JI748_12095 sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      JI748_12110 hypothetical protein	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      JI748_04960 cysE; serine O-acetyltransferase	K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D      JI748_07590 cysteine synthase A	K01738 cysK; cysteine synthase [EC:2.5.1.47]
D      JI748_11880 PLP-dependent cysteine synthase family protein	K01738 cysK; cysteine synthase [EC:2.5.1.47]
D      JI748_04420 homoserine O-succinyltransferase	K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D      JI748_12630 metZ; O-succinylhomoserine sulfhydrylase	K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
B
B  09103 Lipid metabolism
C    00061 Fatty acid biosynthesis [PATH:drh00061]
D      JI748_17075 acetyl-CoA carboxylase carboxyltransferase subunit alpha	K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D      JI748_05910 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein	K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D      JI748_05905 accC; acetyl-CoA carboxylase biotin carboxylase subunit	K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D      JI748_14405 acetyl-CoA carboxylase carboxyltransferase subunit beta	K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D      JI748_08395 acyl carrier protein	K02078 acpP; acyl carrier protein
D      JI748_08405 fabD; ACP S-malonyltransferase	K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D      JI748_08025 ketoacyl-ACP synthase III	K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D      JI748_14175 fabB; beta-ketoacyl-ACP synthase I	K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D      JI748_08390 fabF; beta-ketoacyl-ACP synthase II	K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D      JI748_08400 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      JI748_09620 SDR family oxidoreductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      JI748_14170 fabA; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D      JI748_05820 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ	K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D      JI748_09870 SDR family oxidoreductase	K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D      JI748_00585 long-chain fatty acid--CoA ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C    00062 Fatty acid elongation
C    00071 Fatty acid degradation [PATH:drh00071]
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      JI748_00595 enoyl-CoA hydratase/isomerase family protein	K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D      JI748_00590 acyl-CoA dehydrogenase	K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D      JI748_00585 long-chain fatty acid--CoA ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      JI748_05275 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C    00073 Cutin, suberine and wax biosynthesis
C    00074 Mycolic acid biosynthesis [PATH:drh00074]
D      JI748_08145 holo-ACP synthase	K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D      JI748_08395 acyl carrier protein	K02078 acpP; acyl carrier protein
D      JI748_08405 fabD; ACP S-malonyltransferase	K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C    00100 Steroid biosynthesis
C    00120 Primary bile acid biosynthesis
C    00121 Secondary bile acid biosynthesis
C    00140 Steroid hormone biosynthesis
C    00561 Glycerolipid metabolism [PATH:drh00561]
D      JI748_13580 glycerate kinase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12055 dihydroxyacetone kinase subunit DhaK	K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D      JI748_12060 DAK2 domain-containing protein	K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D      JI748_00120 glpK; glycerol kinase GlpK	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      JI748_10775 glpK; glycerol kinase GlpK	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      JI748_08030 plsX; phosphate acyltransferase PlsX	K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D      JI748_06085 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY	K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D      JI748_16900 1-acyl-sn-glycerol-3-phosphate acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      JI748_02355 alpha-glucosidase/alpha-galactosidase	K07406 melA; alpha-galactosidase [EC:3.2.1.22]
C    00564 Glycerophospholipid metabolism [PATH:drh00564]
D      JI748_15815 NAD(P)-dependent glycerol-3-phosphate dehydrogenase	K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D      JI748_10770 glpD; glycerol-3-phosphate dehydrogenase	K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D      JI748_06085 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY	K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D      JI748_16900 1-acyl-sn-glycerol-3-phosphate acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D      JI748_00440 alpha/beta hydrolase	K01048 pldB; lysophospholipase [EC:3.1.1.5]
D      JI748_03620 glycerophosphoryl diester phosphodiesterase	K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D      JI748_09785 hypothetical protein	K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D      JI748_05800 phosphatidate cytidylyltransferase	K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D      JI748_02440 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D      JI748_07595 cls; cardiolipin synthase	K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C    00565 Ether lipid metabolism
C    00600 Sphingolipid metabolism [PATH:drh00600]
D      JI748_02355 alpha-glucosidase/alpha-galactosidase	K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D      JI748_13080 beta-N-acetylhexosaminidase	K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C    00590 Arachidonic acid metabolism
C    00591 Linoleic acid metabolism
C    00592 alpha-Linolenic acid metabolism
C    01040 Biosynthesis of unsaturated fatty acids [PATH:drh01040]
D      JI748_11350 arylesterase	K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D      JI748_02630 yciA; acyl-CoA thioester hydrolase YciA	K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B  09104 Nucleotide metabolism
C    00230 Purine metabolism [PATH:drh00230]
D      JI748_12480 phosphopentomutase	K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D      JI748_03690 alpha-D-glucose phosphate-specific phosphoglucomutase	K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D      JI748_02380 ribose-phosphate pyrophosphokinase	K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D      JI748_08465 amidophosphoribosyltransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D      JI748_10285 purD; phosphoribosylamine--glycine ligase	K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D      JI748_06445 phosphoribosylglycinamide formyltransferase	K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D      JI748_04760 purL; phosphoribosylformylglycinamidine synthase subunit PurL	K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D      JI748_04780 purS; phosphoribosylformylglycinamidine synthase subunit PurS	K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D      JI748_04770 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      JI748_06440 phosphoribosylformylglycinamidine cyclo-ligase	K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D      JI748_00735 5-(carboxyamino)imidazole ribonucleotide synthase	K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D      JI748_00730 purE; 5-(carboxyamino)imidazole ribonucleotide mutase	K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D      JI748_04785 phosphoribosylaminoimidazolesuccinocarboxamide synthase	K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D      JI748_04805 adenylosuccinate lyase	K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D      JI748_15565 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D      JI748_02310 adenine phosphoribosyltransferase	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      JI748_02050 5'-nucleotidase C-terminal domain-containing protein	K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D      JI748_07450 surE; 5'/3'-nucleotidase SurE	K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D      JI748_15910 deoD; purine-nucleoside phosphorylase	K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D      JI748_02385 pgeF; peptidoglycan editing factor PgeF	K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D      JI748_00410 hpt; hypoxanthine phosphoribosyltransferase	K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D      JI748_08535 guaB; IMP dehydrogenase	K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D      JI748_08315 ndk; nucleoside-diphosphate kinase	K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D      JI748_15245 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D      JI748_04845 gpt; xanthine phosphoribosyltransferase	K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D      JI748_02150 xdhA; xanthine dehydrogenase small subunit	K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4]
D      JI748_02155 xdhB; xanthine dehydrogenase molybdopterin binding subunit	K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4]
D      JI748_09595 xanthine dehydrogenase family protein molybdopterin-binding subunit	K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
D      JI748_09600 xanthine dehydrogenase family protein subunit M	K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
D      JI748_09605 (2Fe-2S)-binding protein	K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit
D      JI748_08505 guaA; glutamine-hydrolyzing GMP synthase	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      JI748_02190 guaD; guanine deaminase	K01487 guaD; guanine deaminase [EC:3.5.4.3]
D      JI748_08380 gmk; guanylate kinase	K00942 gmk; guanylate kinase [EC:2.7.4.8]
D      JI748_13185 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D      JI748_13180 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D      JI748_07495 deoxyguanosinetriphosphate triphosphohydrolase	K01129 dgt; dGTPase [EC:3.1.5.1]
D      JI748_09920 HD family hydrolase	K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D      JI748_08155 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D      JI748_06420 Ppx/GppA family phosphatase	K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D      JI748_08555 Ppx/GppA family phosphatase	K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D      JI748_04905 CYTH domain-containing protein	K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D      JI748_00875 adenylosuccinate synthase	K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D      JI748_06220 AMP nucleosidase	K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D      JI748_02205 ade; adenine deaminase	K01486 ade; adenine deaminase [EC:3.5.4.2]
D      JI748_11145 adenine deaminase	K01486 ade; adenine deaminase [EC:3.5.4.2]
D      JI748_11180 amidohydrolase family protein	K01486 ade; adenine deaminase [EC:3.5.4.2]
D      JI748_02825 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D      JI748_01435 YmdB family metallophosphoesterase	K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D      JI748_05545 adenylate kinase	K00939 adk; adenylate kinase [EC:2.7.4.3]
D      JI748_06285 mazG; nucleoside triphosphate pyrophosphohydrolase	K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D      JI748_05265 cysN; sulfate adenylyltransferase subunit CysN	K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D      JI748_05260 cysD; sulfate adenylyltransferase subunit CysD	K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D      JI748_02145 uraH; hydroxyisourate hydrolase	K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D      JI748_02140 puuE; allantoinase PuuE	K16842 hpxB; allantoinase [EC:3.5.2.5]
D      JI748_02125 (S)-ureidoglycine aminohydrolase	K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26]
D      JI748_02120 ureidoglycolate lyase	K01483 allA; ureidoglycolate lyase [EC:4.3.2.3]
D      JI748_00390 fumarylacetoacetate hydrolase family protein	K16856 ugl; ureidoglycolate lyase [EC:4.3.2.3]
D      JI748_03735 ureC; urease subunit alpha	K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D      JI748_03755 urease subunit beta	K01429 ureB; urease subunit beta [EC:3.5.1.5]
D      JI748_03765 urease subunit gamma	K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C    00240 Pyrimidine metabolism [PATH:drh00240]
D      JI748_02725 carB; carbamoyl-phosphate synthase large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      JI748_02850 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D      JI748_06115 aspartate carbamoyltransferase catalytic subunit	K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D      JI748_06110 pyrC; dihydroorotase	K01465 URA4; dihydroorotase [EC:3.5.2.3]
D      JI748_09910 dihydroorotase	K01465 URA4; dihydroorotase [EC:3.5.2.3]
D      JI748_12590 quinone-dependent dihydroorotate dehydrogenase	K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D      JI748_08150 orotate phosphoribosyltransferase	K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D      JI748_15315 pyrF; orotidine-5'-phosphate decarboxylase	K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D      JI748_05785 UMP kinase	K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D      JI748_08315 ndk; nucleoside-diphosphate kinase	K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D      JI748_06285 mazG; nucleoside triphosphate pyrophosphohydrolase	K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D      JI748_11910 maf; septum formation protein Maf	K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D      JI748_15450 Maf family protein	K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D      JI748_06200 CTP synthase	K01937 pyrG; CTP synthase [EC:6.3.4.2]
D      JI748_14445 (d)CMP kinase	K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D      JI748_02050 5'-nucleotidase C-terminal domain-containing protein	K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D      JI748_07450 surE; 5'/3'-nucleotidase SurE	K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D      JI748_12475 upp; uracil phosphoribosyltransferase	K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D      JI748_02825 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D      JI748_01435 YmdB family metallophosphoesterase	K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D      JI748_16615 pseudouridine-5'-phosphate glycosidase	K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D      JI748_12500 cytidine deaminase	K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D      JI748_11120 amidohydrolase family protein	K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D      JI748_12635 2'-deoxycytidine 5'-triphosphate deaminase	K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D      JI748_13185 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D      JI748_13180 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D      JI748_09920 HD family hydrolase	K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D      JI748_06260 dTMP kinase	K00943 tmk; dTMP kinase [EC:2.7.4.9]
D      JI748_14195 dut; dUTP diphosphatase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D      JI748_12485 deoA; thymidine phosphorylase	K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D      JI748_02625 thymidine kinase	K00857 tdk; thymidine kinase [EC:2.7.1.21]
D      JI748_04115 thymidylate synthase	K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D      JI748_13685 hydA; dihydropyrimidinase	K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D      JI748_13675 Zn-dependent hydrolase	K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D      JI748_01710 SDR family NAD(P)-dependent oxidoreductase	K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B  09105 Amino acid metabolism
C    00250 Alanine, aspartate and glutamate metabolism [PATH:drh00250]
D      JI748_02575 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_07180 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_10715 aspartate/tyrosine/aromatic aminotransferase	K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_11695 aminotransferase class V-fold PLP-dependent enzyme	K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D      JI748_15685 argininosuccinate synthase	K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D      JI748_16935 argH; argininosuccinate lyase	K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D      JI748_00875 adenylosuccinate synthase	K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D      JI748_04805 adenylosuccinate lyase	K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D      JI748_06115 aspartate carbamoyltransferase catalytic subunit	K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D      JI748_10885 NAD-dependent succinate-semialdehyde dehydrogenase	K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D      JI748_00425 gltB; glutamate synthase large subunit	K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D      JI748_00415 glutamate synthase subunit beta	K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D      JI748_06935 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D      JI748_07220 glnA; type I glutamate--ammonia ligase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      JI748_02725 carB; carbamoyl-phosphate synthase large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      JI748_02850 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D      JI748_04770 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      JI748_05200 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      JI748_06735 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      JI748_08205 SIS domain-containing protein	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      JI748_08465 amidophosphoribosyltransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C    00260 Glycine, serine and threonine metabolism [PATH:drh00260]
D      JI748_17250 aspartate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      JI748_16040 aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      JI748_07805 homoserine dehydrogenase	K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D      JI748_10180 threonine synthase	K01733 thrC; threonine synthase [EC:4.2.3.1]
D      JI748_02715 ltaE; low-specificity L-threonine aldolase	K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D      JI748_08065 serine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      JI748_11695 aminotransferase class V-fold PLP-dependent enzyme	K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D      JI748_11220 glyoxylate/hydroxypyruvate reductase A	K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D      JI748_12390 glyoxylate/hydroxypyruvate reductase A	K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D      JI748_13580 glycerate kinase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      JI748_15350 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D      JI748_00890 phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      JI748_11635 C-terminal binding protein	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      JI748_00895 phosphoserine transaminase	K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D      JI748_04150 serB; phosphoserine phosphatase SerB	K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D      JI748_01710 SDR family NAD(P)-dependent oxidoreductase	K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D      JI748_12245 hemA; 5-aminolevulinate synthase	K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D      JI748_10135 gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA	K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D      JI748_10140 gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB	K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D      JI748_10125 gcvT; glycine cleavage system aminomethyltransferase GcvT	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      JI748_01800 dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06355 lpdA; dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_10130 gcvH; glycine cleavage system protein GcvH	K02437 gcvH; glycine cleavage system H protein
D      JI748_11365 L-serine ammonia-lyase	K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D      JI748_01280 ilvA; threonine ammonia-lyase, biosynthetic	K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D      JI748_16180 aspartate/glutamate racemase family protein	K25316 racX; amino-acid racemase [EC:5.1.1.10]
D      JI748_14410 tryptophan synthase subunit alpha	K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D      JI748_14415 trpB; tryptophan synthase subunit beta	K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C    00270 Cysteine and methionine metabolism [PATH:drh00270]
D      JI748_04960 cysE; serine O-acetyltransferase	K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D      JI748_07590 cysteine synthase A	K01738 cysK; cysteine synthase [EC:2.5.1.47]
D      JI748_11880 PLP-dependent cysteine synthase family protein	K01738 cysK; cysteine synthase [EC:2.5.1.47]
D      JI748_07630 metC; cystathionine beta-lyase	K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D      JI748_06245 metH; methionine synthase	K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D      JI748_08245 cobalamin-independent methionine synthase II family protein	K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D      JI748_14520 methionine adenosyltransferase	K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D      JI748_06560 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D      JI748_12680 S-methyl-5-thioribose kinase	K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100]
D      JI748_02385 pgeF; peptidoglycan editing factor PgeF	K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D      JI748_12685 mtnA; S-methyl-5-thioribose-1-phosphate isomerase	K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D      JI748_12700 transcriptional regulator	K25035 rlp; S-methyl-5-thioribulose 1-phosphate isomerase [EC:5.3.3.23]
D      JI748_13400 adenosylhomocysteinase	K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D      JI748_17250 aspartate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      JI748_16040 aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      JI748_07805 homoserine dehydrogenase	K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D      JI748_04420 homoserine O-succinyltransferase	K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D      JI748_09610 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D      JI748_12630 metZ; O-succinylhomoserine sulfhydrylase	K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D      JI748_02420 branched-chain amino acid aminotransferase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      JI748_10280 glutamate--cysteine ligase	K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D      JI748_15225 gshB; glutathione synthase	K01920 gshB; glutathione synthase [EC:6.3.2.3]
D      JI748_02575 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_07180 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_10715 aspartate/tyrosine/aromatic aminotransferase	K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_01980 sseA; 3-mercaptopyruvate sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      JI748_12095 sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      JI748_12110 hypothetical protein	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      JI748_16180 aspartate/glutamate racemase family protein	K25316 racX; amino-acid racemase [EC:5.1.1.10]
D      JI748_01760 mdh; malate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      JI748_11365 L-serine ammonia-lyase	K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D      JI748_00890 phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      JI748_11635 C-terminal binding protein	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      JI748_00895 phosphoserine transaminase	K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C    00280 Valine, leucine and isoleucine degradation [PATH:drh00280]
D      JI748_02420 branched-chain amino acid aminotransferase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      JI748_01800 dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06355 lpdA; dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_00595 enoyl-CoA hydratase/isomerase family protein	K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D      JI748_13670 CoA-acylating methylmalonate-semialdehyde dehydrogenase	K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_13665 aspartate aminotransferase family protein	K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C    00290 Valine, leucine and isoleucine biosynthesis [PATH:drh00290]
D      JI748_01280 ilvA; threonine ammonia-lyase, biosynthetic	K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D      JI748_15555 leuC; 3-isopropylmalate dehydratase large subunit	K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D      JI748_15900 leuD; 3-isopropylmalate dehydratase small subunit	K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D      JI748_15890 leuB; 3-isopropylmalate dehydrogenase	K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D      JI748_04170 acetolactate synthase 3 large subunit	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      JI748_04175 ilvN; acetolactate synthase small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D      JI748_04230 ilvC; ketol-acid reductoisomerase	K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D      JI748_17215 ilvD; dihydroxy-acid dehydratase	K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D      JI748_02420 branched-chain amino acid aminotransferase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      JI748_04260 2-isopropylmalate synthase	K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D      JI748_08715 citramalate synthase	K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C    00300 Lysine biosynthesis [PATH:drh00300]
D      JI748_07805 homoserine dehydrogenase	K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D      JI748_17250 aspartate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      JI748_16040 aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      JI748_08175 4-hydroxy-tetrahydrodipicolinate synthase	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      JI748_11000 dihydrodipicolinate synthase family protein	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      JI748_12050 dihydrodipicolinate synthase family protein	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      JI748_15355 4-hydroxy-tetrahydrodipicolinate reductase	K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D      JI748_12370 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D      JI748_13025 aspartate aminotransferase family protein	K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D      JI748_12365 dapE; succinyl-diaminopimelate desuccinylase	K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D      JI748_15845 diaminopimelate epimerase	K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D      JI748_16925 lysA; diaminopimelate decarboxylase	K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D      JI748_03960 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D      JI748_03965 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C    00310 Lysine degradation [PATH:drh00310]
D      JI748_01780 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D      JI748_01800 dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06355 lpdA; dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_00595 enoyl-CoA hydratase/isomerase family protein	K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      JI748_16180 aspartate/glutamate racemase family protein	K25316 racX; amino-acid racemase [EC:5.1.1.10]
D      JI748_10885 NAD-dependent succinate-semialdehyde dehydrogenase	K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D      JI748_01680 lysine-2,3-aminomutase-like protein	K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D      JI748_13795 FAD-binding oxidoreductase	K26064 amaD; D-lysine oxidase
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C    00220 Arginine biosynthesis [PATH:drh00220]
D      JI748_13020 argF; ornithine carbamoyltransferase	K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D      JI748_15685 argininosuccinate synthase	K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D      JI748_16935 argH; argininosuccinate lyase	K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D      JI748_06665 biotin-dependent carboxyltransferase family protein	K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D      JI748_03735 ureC; urease subunit alpha	K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D      JI748_03755 urease subunit beta	K01429 ureB; urease subunit beta [EC:3.5.1.5]
D      JI748_03765 urease subunit gamma	K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D      JI748_04770 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      JI748_07220 glnA; type I glutamate--ammonia ligase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      JI748_02725 carB; carbamoyl-phosphate synthase large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      JI748_02850 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D      JI748_02575 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_07180 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_10715 aspartate/tyrosine/aromatic aminotransferase	K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_17040 argJ; bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D      JI748_01295 argB; acetylglutamate kinase	K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D      JI748_15905 argC; N-acetyl-gamma-glutamyl-phosphate reductase	K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D      JI748_13025 aspartate aminotransferase family protein	K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C    00330 Arginine and proline metabolism [PATH:drh00330]
D      JI748_11120 amidohydrolase family protein	K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D      JI748_05575 type III PLP-dependent enzyme	K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D      JI748_03915 carboxynorspermidine decarboxylase	K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_02410 pyrroline-5-carboxylate reductase	K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D      JI748_06935 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D      JI748_16225 glutamate 5-kinase	K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D      JI748_16220 glutamate-5-semialdehyde dehydrogenase	K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D      JI748_02575 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_07180 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_10715 aspartate/tyrosine/aromatic aminotransferase	K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C    00340 Histidine metabolism [PATH:drh00340]
D      JI748_10630 ATP phosphoribosyltransferase	K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D      JI748_10635 ATP phosphoribosyltransferase regulatory subunit	K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D      JI748_15370 phosphoribosyl-ATP diphosphatase	K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D      JI748_05000 hisI; phosphoribosyl-AMP cyclohydrolase	K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D      JI748_15385 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase	K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D      JI748_11495 hisH; imidazole glycerol phosphate synthase subunit HisH	K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D      JI748_15390 hisH; imidazole glycerol phosphate synthase subunit HisH	K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D      JI748_11500 hisF; imidazole glycerol phosphate synthase subunit HisF	K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D      JI748_15375 hisF; imidazole glycerol phosphate synthase subunit HisF	K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D      JI748_15395 hisB; imidazoleglycerol-phosphate dehydratase HisB	K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D      JI748_04270 pyridoxal phosphate-dependent aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      JI748_16875 histidinol-phosphate transaminase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      JI748_00460 inositol monophosphatase family protein	K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D      JI748_11925 hisD; histidinol dehydrogenase	K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C    00350 Tyrosine metabolism [PATH:drh00350]
D      JI748_02575 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_07180 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_10715 aspartate/tyrosine/aromatic aminotransferase	K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_04270 pyridoxal phosphate-dependent aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      JI748_16875 histidinol-phosphate transaminase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      JI748_08745 fumarylacetoacetate hydrolase family protein	K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D      JI748_05275 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D      JI748_12175 hypothetical protein	K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D      JI748_10885 NAD-dependent succinate-semialdehyde dehydrogenase	K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D      JI748_16570 fumarylacetoacetate hydrolase family protein	K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C    00360 Phenylalanine metabolism [PATH:drh00360]
D      JI748_02575 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_07180 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_10715 aspartate/tyrosine/aromatic aminotransferase	K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_04270 pyridoxal phosphate-dependent aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      JI748_16875 histidinol-phosphate transaminase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      JI748_03870 katG; catalase/peroxidase HPI	K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D      JI748_10950 fumarylacetoacetate hydrolase family protein	K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C    00380 Tryptophan metabolism [PATH:drh00380]
D      JI748_10890 alpha/beta hydrolase	K01432 AFMID; arylformamidase [EC:3.5.1.9]
D      JI748_07175 aminotransferase class V-fold PLP-dependent enzyme	K01556 KYNU; kynureninase [EC:3.7.1.3]
D      JI748_01780 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D      JI748_01800 dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06355 lpdA; dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_00595 enoyl-CoA hydratase/isomerase family protein	K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_03870 katG; catalase/peroxidase HPI	K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C    00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:drh00400]
D      JI748_02445 3-deoxy-7-phosphoheptulonate synthase	K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D      JI748_08775 3-deoxy-7-phosphoheptulonate synthase class II	K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D      JI748_17095 3-dehydroquinate synthase	K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D      JI748_03170 3-dehydroquinate dehydratase	K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D      JI748_05915 aroQ; type II 3-dehydroquinate dehydratase	K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D      JI748_03135 sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein	K26400 quiC1; 3-dehydroshikimate dehydratase [EC:4.2.1.118]
D      JI748_03145 shikimate dehydrogenase	K25901 qsuD; quinate/shikimate dehydrogenase (NAD+) [EC:1.1.1.24]
D      JI748_15445 shikimate dehydrogenase	K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D      JI748_17090 shikimate kinase	K00891 aroK; shikimate kinase [EC:2.7.1.71]
D      JI748_07275 3-phosphoshikimate 1-carboxyvinyltransferase	K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D      JI748_09855 aroC; chorismate synthase	K01736 aroC; chorismate synthase [EC:4.2.3.5]
D      JI748_06180 trpE; anthranilate synthase component I	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      JI748_06175 aminodeoxychorismate/anthranilate synthase component II	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D      JI748_06170 trpD; anthranilate phosphoribosyltransferase	K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D      JI748_14420 phosphoribosylanthranilate isomerase	K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D      JI748_06165 trpC; indole-3-glycerol phosphate synthase TrpC	K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D      JI748_14410 tryptophan synthase subunit alpha	K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D      JI748_14415 trpB; tryptophan synthase subunit beta	K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D      JI748_16880 prephenate/arogenate dehydrogenase family protein	K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
D      JI748_12380 prephenate dehydratase	K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D      JI748_02575 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_07180 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_10715 aspartate/tyrosine/aromatic aminotransferase	K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_04270 pyridoxal phosphate-dependent aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      JI748_16875 histidinol-phosphate transaminase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B  09106 Metabolism of other amino acids
C    00410 beta-Alanine metabolism [PATH:drh00410]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_13685 hydA; dihydropyrimidinase	K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D      JI748_13675 Zn-dependent hydrolase	K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D      JI748_13665 aspartate aminotransferase family protein	K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D      JI748_00595 enoyl-CoA hydratase/isomerase family protein	K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D      JI748_13670 CoA-acylating methylmalonate-semialdehyde dehydrogenase	K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C    00430 Taurine and hypotaurine metabolism
D      JI748_11200 gamma-glutamyltransferase	K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
C    00440 Phosphonate and phosphinate metabolism [PATH:drh00440]
D      JI748_13990 carbon-phosphorus lyase complex subunit PhnI	K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D      JI748_13980 phnG; phosphonate C-P lyase system protein PhnG	K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D      JI748_13985 phnH; phosphonate C-P lyase system protein PhnH	K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D      JI748_14005 phnL; phosphonate C-P lyase system protein PhnL	K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D      JI748_13570 alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D      JI748_13965 alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D      JI748_13995 alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ	K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
D      JI748_06280 MBL fold metallo-hydrolase	K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C    00450 Selenocompound metabolism [PATH:drh00450]
D      JI748_07630 metC; cystathionine beta-lyase	K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D      JI748_06245 metH; methionine synthase	K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D      JI748_08245 cobalamin-independent methionine synthase II family protein	K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D      JI748_07290 cysteine desulfurase	K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D      JI748_02695 trxB; thioredoxin-disulfide reductase	K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D      JI748_04395 NAD(P)/FAD-dependent oxidoreductase	K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D      JI748_05265 cysN; sulfate adenylyltransferase subunit CysN	K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D      JI748_05260 cysD; sulfate adenylyltransferase subunit CysD	K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D      JI748_06270 methionine--tRNA ligase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C    00460 Cyanoamino acid metabolism [PATH:drh00460]
D      JI748_10700 beta-glucosidase	K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D      JI748_11200 gamma-glutamyltransferase	K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D      JI748_08065 serine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C    00470 D-Amino acid metabolism [PATH:drh00470]
D      JI748_08440 alr; alanine racemase	K01775 alr; alanine racemase [EC:5.1.1.1]
D      JI748_04005 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      JI748_16180 aspartate/glutamate racemase family protein	K25316 racX; amino-acid racemase [EC:5.1.1.10]
D      JI748_04770 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      JI748_15845 diaminopimelate epimerase	K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D      JI748_16925 lysA; diaminopimelate decarboxylase	K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C    00480 Glutathione metabolism [PATH:drh00480]
D      JI748_11200 gamma-glutamyltransferase	K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D      JI748_16890 gamma-glutamylcyclotransferase	K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7]
D      JI748_16930 gamma-glutamylcyclotransferase	K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7]
D      JI748_06660 LamB/YcsF family protein	K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D      JI748_10280 glutamate--cysteine ligase	K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D      JI748_15225 gshB; glutathione synthase	K01920 gshB; glutathione synthase [EC:6.3.2.3]
D      JI748_12400 leucyl aminopeptidase family protein	K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D      JI748_08900 pepN; aminopeptidase N	K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D      JI748_01065 glutathione S-transferase family protein	K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D      JI748_01690 glutathione S-transferase family protein	K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D      JI748_02240 glutathione S-transferase family protein	K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D      JI748_05695 glutathione S-transferase family protein	K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D      JI748_14100 glutathione S-transferase family protein	K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D      JI748_08780 gor; glutathione-disulfide reductase	K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D      JI748_04630 NADP-dependent isocitrate dehydrogenase	K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D      JI748_04925 gndA; NADP-dependent phosphogluconate dehydrogenase	K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D      JI748_10425 zwf; glucose-6-phosphate dehydrogenase	K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D      JI748_10150 peroxiredoxin	K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D      JI748_05575 type III PLP-dependent enzyme	K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B  09107 Glycan biosynthesis and metabolism
C    00510 N-Glycan biosynthesis
C    00513 Various types of N-glycan biosynthesis
C    00512 Mucin type O-glycan biosynthesis
C    00515 Mannose type O-glycan biosynthesis
C    00514 Other types of O-glycan biosynthesis
C    00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C    00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C    00533 Glycosaminoglycan biosynthesis - keratan sulfate
C    00531 Glycosaminoglycan degradation
C    00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C    00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C    00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C    00604 Glycosphingolipid biosynthesis - ganglio series
C    00511 Other glycan degradation [PATH:drh00511]
D      JI748_13080 beta-N-acetylhexosaminidase	K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D      JI748_08880 glycoside hydrolase family 2 protein	K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
C    00540 Lipopolysaccharide biosynthesis [PATH:drh00540]
D      JI748_05825 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D      JI748_04030 UDP-3-O-acyl-N-acetylglucosamine deacetylase	K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D      JI748_05815 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D      JI748_05830 lipid-A-disaccharide synthase	K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D      JI748_16030 acyloxyacyl hydrolase	K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D      JI748_14315 O-antigen ligase family protein	K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C    00542 O-Antigen repeat unit biosynthesis
C    00541 O-Antigen nucleotide sugar biosynthesis [PATH:drh00541]
D      JI748_15200 galU; UTP--glucose-1-phosphate uridylyltransferase GalU	K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D      JI748_11610 NAD(P)-dependent oxidoreductase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      JI748_15205 galE; UDP-glucose 4-epimerase GalE	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      JI748_13375 glf; UDP-galactopyranose mutase	K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D      JI748_09520 UDP-glucose/GDP-mannose dehydrogenase family protein	K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D      JI748_09530 GDP-mannose 4,6-dehydratase	K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
D      JI748_05035 phosphomannomutase	K01840 manB; phosphomannomutase [EC:5.4.2.8]
D      JI748_05100 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D      JI748_05050 gmd; GDP-mannose 4,6-dehydratase	K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D      JI748_05055 GDP-L-fucose synthase	K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D      JI748_06740 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D      JI748_11445 SDR family NAD(P)-dependent oxidoreductase	K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D      JI748_11450 capsular polysaccharide biosynthesis protein CapF	K19068 wbjC; UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase [EC:1.1.1.367]
D      JI748_11455 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28]
D      JI748_11440 acylneuraminate cytidylyltransferase family protein	K24307 lea7; 5-N-acetyl-7-N-(D-alanyl)-legionaminic acid cytidylyltransferase
C    00550 Peptidoglycan biosynthesis [PATH:drh00550]
D      JI748_11940 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase	K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D      JI748_06095 murB; UDP-N-acetylmuramate dehydrogenase	K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D      JI748_04000 UDP-N-acetylmuramate--L-alanine ligase	K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D      JI748_02225 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	K23169 murD2; UDP-N-acetylmuramoyl-L-alanine---L-glutamate ligase [EC:6.3.2.53]
D      JI748_02230 hypothetical protein	K23170 murL; UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase [EC:5.1.1.23]
D      JI748_03960 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D      JI748_04005 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      JI748_03965 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D      JI748_05795 isoprenyl transferase	K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D      JI748_14095 undecaprenyl-diphosphate phosphatase	K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D      JI748_12285 phosphatase PAP2 family protein	K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D      JI748_03970 phospho-N-acetylmuramoyl-pentapeptide-transferase	K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D      JI748_03995 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D      JI748_16825 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase	K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D      JI748_05945 penicillin-binding protein 1A	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_09125 PBP1A family penicillin-binding protein	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_14260 PBP1A family penicillin-binding protein	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_03390 penicillin-binding protein 2	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D      JI748_03955 penicillin-binding protein 2	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D      JI748_06255 D-alanyl-D-alanine carboxypeptidase	K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C    00552 Teichoic acid biosynthesis [PATH:drh00552]
D      JI748_14095 undecaprenyl-diphosphate phosphatase	K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D      JI748_12285 phosphatase PAP2 family protein	K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
C    00571 Lipoarabinomannan (LAM) biosynthesis
C    00572 Arabinogalactan biosynthesis - Mycobacterium
C    00543 Exopolysaccharide biosynthesis [PATH:drh00543]
D      JI748_05060 WcaI family glycosyltransferase	K03208 wcaI; putative colanic acid biosynthesis glycosyltransferase WcaI
D      JI748_05080 putative colanic acid biosynthesis acetyltransferase	K03818 wcaF; putative colanic acid biosynthesis acetyltransferase WcaF [EC:2.3.1.-]
D      JI748_11520 MBOAT family protein	K19294 algI; alginate O-acetyltransferase complex protein AlgI
D      JI748_04960 cysE; serine O-acetyltransferase	K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D      JI748_09190 acyltransferase	K16568 exoZ; exopolysaccharide production protein ExoZ
B
B  09108 Metabolism of cofactors and vitamins
C    00730 Thiamine metabolism [PATH:drh00730]
D      JI748_07310 aminotransferase class V-fold PLP-dependent enzyme	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      JI748_00695 dxs; 1-deoxy-D-xylulose-5-phosphate synthase	K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D      JI748_01345 thiamine phosphate synthase	K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D      JI748_00850 thiamine diphosphokinase	K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D      JI748_05545 adenylate kinase	K00939 adk; adenylate kinase [EC:2.7.4.3]
C    00740 Riboflavin metabolism [PATH:drh00740]
D      JI748_10565 bifunctional riboflavin kinase/FAD synthetase	K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
C    00750 Vitamin B6 metabolism [PATH:drh00750]
D      JI748_10785 pdxH; pyridoxamine 5'-phosphate oxidase	K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D      JI748_17200 aldo/keto reductase	K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65]
D      JI748_00895 phosphoserine transaminase	K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D      JI748_08365 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA	K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D      JI748_04180 pyridoxine 5'-phosphate synthase	K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D      JI748_10180 threonine synthase	K01733 thrC; threonine synthase [EC:4.2.3.1]
C    00760 Nicotinate and nicotinamide metabolism [PATH:drh00760]
D      JI748_14480 pncB; nicotinate phosphoribosyltransferase	K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D      JI748_15910 deoD; purine-nucleoside phosphorylase	K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D      JI748_02050 5'-nucleotidase C-terminal domain-containing protein	K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D      JI748_07450 surE; 5'/3'-nucleotidase SurE	K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D      JI748_16215 nicotinate-nucleotide adenylyltransferase	K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D      JI748_06285 mazG; nucleoside triphosphate pyrophosphohydrolase	K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D      JI748_03835 nudC; NAD(+) diphosphatase	K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D      JI748_03325 nadE; ammonia-dependent NAD(+) synthetase	K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D      JI748_08760 NAD+ synthase	K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D      JI748_06335 CinA family protein	K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D      JI748_15265 pncA; bifunctional nicotinamidase/pyrazinamidase	K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D      JI748_05135 NAD kinase	K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D      JI748_12270 sthA; Si-specific NAD(P)(+) transhydrogenase	K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D      JI748_00780 NAD(P) transhydrogenase subunit alpha	K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D      JI748_00785 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D      JI748_00775 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D      JI748_10885 NAD-dependent succinate-semialdehyde dehydrogenase	K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C    00770 Pantothenate and CoA biosynthesis [PATH:drh00770]
D      JI748_04170 acetolactate synthase 3 large subunit	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      JI748_04175 ilvN; acetolactate synthase small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D      JI748_04230 ilvC; ketol-acid reductoisomerase	K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D      JI748_17215 ilvD; dihydroxy-acid dehydratase	K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D      JI748_11245 NAD(P)-binding domain-containing protein	K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D      JI748_15365 type I pantothenate kinase	K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D      JI748_06285 mazG; nucleoside triphosphate pyrophosphohydrolase	K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D      JI748_06815 coaD; pantetheine-phosphate adenylyltransferase	K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D      JI748_15440 coaE; dephospho-CoA kinase	K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D      JI748_08145 holo-ACP synthase	K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D      JI748_02420 branched-chain amino acid aminotransferase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      JI748_13685 hydA; dihydropyrimidinase	K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D      JI748_13675 Zn-dependent hydrolase	K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C    00780 Biotin metabolism [PATH:drh00780]
D      JI748_14175 fabB; beta-ketoacyl-ACP synthase I	K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D      JI748_08390 fabF; beta-ketoacyl-ACP synthase II	K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D      JI748_08400 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      JI748_09620 SDR family oxidoreductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      JI748_05820 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ	K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D      JI748_09870 SDR family oxidoreductase	K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D      JI748_06850 biotin--[acetyl-CoA-carboxylase] ligase	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C    00785 Lipoic acid metabolism [PATH:drh00785]
D      JI748_05665 lipB; lipoyl(octanoyl) transferase LipB	K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D      JI748_06345 lipA; lipoyl synthase	K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D      JI748_01800 dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06355 lpdA; dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06385 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      JI748_06375 pyruvate dehydrogenase complex E1 component subunit beta	K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D      JI748_06370 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D      JI748_01775 2-oxoglutarate dehydrogenase E1 component	K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D      JI748_01780 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D      JI748_10135 gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA	K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D      JI748_10140 gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB	K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D      JI748_10125 gcvT; glycine cleavage system aminomethyltransferase GcvT	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      JI748_10130 gcvH; glycine cleavage system protein GcvH	K02437 gcvH; glycine cleavage system H protein
C    00790 Folate biosynthesis [PATH:drh00790]
D      JI748_05005 folE; GTP cyclohydrolase I FolE	K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D      JI748_05610 folB; dihydroneopterin aldolase	K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D      JI748_05605 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D      JI748_05615 folP; dihydropteroate synthase	K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D      JI748_04135 dihydrofolate reductase	K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D      JI748_14560 bifunctional folylpolyglutamate synthase/dihydrofolate synthase	K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D      JI748_15270 pabB; aminodeoxychorismate synthase component I	K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D      JI748_08800 moaA; GTP 3',8-cyclase MoaA	K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D      JI748_06160 moaC; cyclic pyranopterin monophosphate synthase MoaC	K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D      JI748_02430 molybdenum cofactor biosynthesis protein MoaE	K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D      JI748_10030 moaB; molybdenum cofactor biosynthesis protein B	K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D      JI748_06155 molybdopterin molybdotransferase MoeA	K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D      JI748_16455 nucleotidyltransferase family protein	K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D      JI748_07565 molybdenum cofactor guanylyltransferase	K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C    00670 One carbon pool by folate [PATH:drh00670]
D      JI748_04135 dihydrofolate reductase	K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D      JI748_06230 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D      JI748_08065 serine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      JI748_06445 phosphoribosylglycinamide formyltransferase	K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D      JI748_15565 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D      JI748_12345 methionyl-tRNA formyltransferase	K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D      JI748_10125 gcvT; glycine cleavage system aminomethyltransferase GcvT	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      JI748_06245 metH; methionine synthase	K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D      JI748_04115 thymidylate synthase	K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D      JI748_16590 purU; formyltetrahydrofolate deformylase	K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D      JI748_03895 metF; methylenetetrahydrofolate reductase [NAD(P)H]	K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D      JI748_01430 5-formyltetrahydrofolate cyclo-ligase	K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C    00830 Retinol metabolism
C    00860 Porphyrin metabolism [PATH:drh00860]
D      JI748_12245 hemA; 5-aminolevulinate synthase	K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D      JI748_05840 glutamate--tRNA ligase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      JI748_08755 glutamate--tRNA ligase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      JI748_08095 hemB; porphobilinogen synthase	K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D      JI748_15805 hemC; hydroxymethylbilane synthase	K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D      JI748_15800 uroporphyrinogen-III synthase	K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D      JI748_15455 uroporphyrinogen decarboxylase	K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D      JI748_02280 hemF; oxygen-dependent coproporphyrinogen oxidase	K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D      JI748_12190 CopD family protein	K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D      JI748_15460 hemJ; protoporphyrinogen oxidase HemJ	K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D      JI748_02490 ferrochelatase	K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D      JI748_04375 cobA; uroporphyrinogen-III C-methyltransferase	K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D      JI748_10205 protoheme IX farnesyltransferase	K02257 COX10; heme o synthase [EC:2.5.1.141]
D      JI748_07915 COX15/CtaA family protein	K02259 COX15; heme a synthase [EC:1.17.99.9]
D      JI748_09430 precorrin-2 C(20)-methyltransferase	K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D      JI748_09420 cobG; precorrin-3B synthase	K02229 cobG; precorrin-3B synthase [EC:1.14.13.83]
D      JI748_09435 precorrin-3B C(17)-methyltransferase	K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D      JI748_09445 cobM; precorrin-4 C(11)-methyltransferase	K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D      JI748_09415 precorrin-6A synthase (deacetylating)	K02228 cobF; precorrin-6A synthase [EC:2.1.1.152]
D      JI748_10455 cobalt-precorrin-6A reductase	K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D      JI748_09440 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE	K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D      JI748_09425 precorrin-8X methylmutase	K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D      JI748_10450 cobyrinate a,c-diamide synthase	K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D      JI748_10475 cobN; cobaltochelatase subunit CobN	K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D      JI748_17115 cobS; cobaltochelatase subunit CobS	K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]
D      JI748_17120 cobT; cobaltochelatase subunit CobT	K09883 cobT; cobaltochelatase CobT [EC:6.6.1.2]
D      JI748_16955 cob(I)yrinic acid a,c-diamide adenosyltransferase	K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D      JI748_10470 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase	K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D      JI748_10445 cobyric acid synthase	K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D      JI748_10440 cobD; cobalamin biosynthesis protein CobD	K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D      JI748_10435 cobU; bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D      JI748_08840 adenosylcobinamide-GDP ribazoletransferase	K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D      JI748_08835 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D      JI748_00030 bfr; bacterioferritin	K03594 bfr; bacterioferritin [EC:1.16.3.1]
C    00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:drh00130]
D      JI748_07070 acyl-CoA thioesterase	K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D      JI748_10270 4-hydroxybenzoate octaprenyltransferase	K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D      JI748_17235 ubiG; bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D      JI748_06710 FAD-dependent monooxygenase	K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D      JI748_14070 FAD-dependent monooxygenase	K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D      JI748_14210 ubiE; bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D      JI748_05730 NAD(P)H-binding protein	K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B  09109 Metabolism of terpenoids and polyketides
C    00900 Terpenoid backbone biosynthesis [PATH:drh00900]
D      JI748_00695 dxs; 1-deoxy-D-xylulose-5-phosphate synthase	K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D      JI748_06330 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D      JI748_09995 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D      JI748_16790 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D      JI748_09945 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      JI748_12815 type 2 isopentenyl-diphosphate Delta-isomerase	K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D      JI748_12810 polyprenyl synthetase family protein	K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D      JI748_16820 polyprenyl synthetase family protein	K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D      JI748_09990 polyprenyl synthetase family protein	K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D      JI748_05795 isoprenyl transferase	K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C    00902 Monoterpenoid biosynthesis
C    00909 Sesquiterpenoid and triterpenoid biosynthesis
C    00904 Diterpenoid biosynthesis
C    00906 Carotenoid biosynthesis [PATH:drh00906]
D      JI748_07420 squalene/phytoene synthase family protein	K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D      JI748_12785 phytoene/squalene synthase family protein	K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D      JI748_12780 phytoene desaturase	K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31]
D      JI748_12775 crtY; lycopene beta-cyclase CrtY	K06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19]
D      JI748_12795 fatty acid desaturase	K09836 crtW; beta-carotene/zeaxanthin 4-ketolase [EC:1.14.99.63 1.14.99.64]
D      JI748_12790 sterol desaturase family protein	K15746 crtZ; beta-carotene 3-hydroxylase [EC:1.14.15.24]
D      JI748_12770 hypothetical protein	K14596 crtX; zeaxanthin glucosyltransferase [EC:2.4.1.276]
C    00905 Brassinosteroid biosynthesis
C    00981 Insect hormone biosynthesis
C    00908 Zeatin biosynthesis
C    00903 Limonene degradation
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C    00907 Pinene, camphor and geraniol degradation [PATH:drh00907]
D      JI748_00595 enoyl-CoA hydratase/isomerase family protein	K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C    01052 Type I polyketide structures
C    00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C    01051 Biosynthesis of ansamycins
D      JI748_00125 transketolase family protein	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_00130 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_01395 tkt; transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_12690 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D      JI748_12695 transketolase	K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C    01059 Biosynthesis of enediyne antibiotics
C    01056 Biosynthesis of type II polyketide backbone
C    01057 Biosynthesis of type II polyketide products
C    00253 Tetracycline biosynthesis
C    00523 Polyketide sugar unit biosynthesis
D      JI748_09525 NAD-dependent epimerase/dehydratase family protein	K17947 wbiB; dTDP-L-rhamnose 4-epimerase [EC:5.1.3.25]
C    01054 Nonribosomal peptide structures
C    01053 Biosynthesis of siderophore group nonribosomal peptides
D      JI748_06480 chorismate mutase	K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21]
C    01055 Biosynthesis of vancomycin group antibiotics
B
B  09110 Biosynthesis of other secondary metabolites
C    00940 Phenylpropanoid biosynthesis
C    00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C    00941 Flavonoid biosynthesis
C    00944 Flavone and flavonol biosynthesis
C    00942 Anthocyanin biosynthesis
C    00943 Isoflavonoid biosynthesis
C    00946 Degradation of flavonoids [PATH:drh00946]
D      JI748_10700 beta-glucosidase	K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D      JI748_00170 family 78 glycoside hydrolase catalytic domain	K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
C    00901 Indole alkaloid biosynthesis
C    00403 Indole diterpene alkaloid biosynthesis
C    00950 Isoquinoline alkaloid biosynthesis
C    00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C    00996 Biosynthesis of various alkaloids
C    00232 Caffeine metabolism
C    00965 Betalain biosynthesis
C    00966 Glucosinolate biosynthesis
C    00402 Benzoxazinoid biosynthesis
C    00311 Penicillin and cephalosporin biosynthesis
D      JI748_01655 acetylxylan esterase	K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41]
C    00332 Carbapenem biosynthesis [PATH:drh00332]
D      JI748_16225 glutamate 5-kinase	K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D      JI748_16220 glutamate-5-semialdehyde dehydrogenase	K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C    00261 Monobactam biosynthesis [PATH:drh00261]
D      JI748_05265 cysN; sulfate adenylyltransferase subunit CysN	K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D      JI748_05260 cysD; sulfate adenylyltransferase subunit CysD	K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D      JI748_17250 aspartate kinase	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      JI748_16040 aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      JI748_08175 4-hydroxy-tetrahydrodipicolinate synthase	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      JI748_11000 dihydrodipicolinate synthase family protein	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      JI748_12050 dihydrodipicolinate synthase family protein	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      JI748_15355 4-hydroxy-tetrahydrodipicolinate reductase	K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C    00331 Clavulanic acid biosynthesis
C    00521 Streptomycin biosynthesis [PATH:drh00521]
D      JI748_03690 alpha-D-glucose phosphate-specific phosphoglucomutase	K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D      JI748_09475 inositol-3-phosphate synthase	K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D      JI748_01335 inositol monophosphatase	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D      JI748_09790 inositol monophosphatase	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D      JI748_10260 3'(2'),5'-bisphosphate nucleotidase CysQ	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
C    00524 Neomycin, kanamycin and gentamicin biosynthesis
C    00525 Acarbose and validamycin biosynthesis
C    00401 Novobiocin biosynthesis [PATH:drh00401]
D      JI748_16880 prephenate/arogenate dehydrogenase family protein	K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
D      JI748_02575 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_07180 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_10715 aspartate/tyrosine/aromatic aminotransferase	K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_04270 pyridoxal phosphate-dependent aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      JI748_16875 histidinol-phosphate transaminase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C    00404 Staurosporine biosynthesis
C    00405 Phenazine biosynthesis [PATH:drh00405]
D      JI748_04255 PhzF family phenazine biosynthesis protein	K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
D      JI748_06180 trpE; anthranilate synthase component I	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      JI748_06175 aminodeoxychorismate/anthranilate synthase component II	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C    00333 Prodigiosin biosynthesis
D      JI748_08405 fabD; ACP S-malonyltransferase	K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D      JI748_08400 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      JI748_09620 SDR family oxidoreductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      JI748_09870 SDR family oxidoreductase	K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C    00254 Aflatoxin biosynthesis
C    00998 Biosynthesis of various antibiotics
D      JI748_08395 acyl carrier protein	K02078 acpP; acyl carrier protein
C    00999 Biosynthesis of various plant secondary metabolites [PATH:drh00999]
D      JI748_14520 methionine adenosyltransferase	K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D      JI748_15445 shikimate dehydrogenase	K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D      JI748_10700 beta-glucosidase	K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C    00997 Biosynthesis of various other secondary metabolites
B
B  09111 Xenobiotics biodegradation and metabolism
C    00362 Benzoate degradation [PATH:drh00362]
D      JI748_03180 pcaD; 3-oxoadipate enol-lactonase	K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D      JI748_03205 3-oxoacid CoA-transferase subunit A	K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D      JI748_11715 3-oxoacid CoA-transferase subunit A	K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D      JI748_03210 CoA transferase subunit B	K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D      JI748_11710 CoA transferase subunit B	K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D      JI748_03215 pcaF; 3-oxoadipyl-CoA thiolase	K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D      JI748_11705 pcaF; 3-oxoadipyl-CoA thiolase	K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D      JI748_13065 VOC family protein	K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D      JI748_10950 fumarylacetoacetate hydrolase family protein	K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D      JI748_03195 pcaG; protocatechuate 3,4-dioxygenase subunit alpha	K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D      JI748_03190 pcaH; protocatechuate 3,4-dioxygenase subunit beta	K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D      JI748_03200 3-carboxy-cis,cis-muconate cycloisomerase	K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D      JI748_03185 pcaC; 4-carboxymuconolactone decarboxylase	K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D      JI748_12070 RraA family protein	K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D      JI748_04365 2Fe-2S iron-sulfur cluster binding domain-containing protein	K04755 fdx; ferredoxin, 2Fe-2S
D      JI748_04400 2Fe-2S iron-sulfur cluster binding domain-containing protein	K04755 fdx; ferredoxin, 2Fe-2S
D      JI748_07070 acyl-CoA thioesterase	K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D      JI748_00595 enoyl-CoA hydratase/isomerase family protein	K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C    00627 Aminobenzoate degradation
D      JI748_07060 bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase	K09461 E1.14.13.40; anthraniloyl-CoA monooxygenase [EC:1.14.13.40]
C    00364 Fluorobenzoate degradation
C    00625 Chloroalkane and chloroalkene degradation [PATH:drh00625]
D      JI748_05275 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D      JI748_11740 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12490 aldehyde dehydrogenase family protein	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      JI748_12465 HAD family phosphatase	K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C    00361 Chlorocyclohexane and chlorobenzene degradation [PATH:drh00361]
D      JI748_13065 VOC family protein	K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D      JI748_12465 HAD family phosphatase	K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C    00623 Toluene degradation
C    00622 Xylene degradation [PATH:drh00622]
D      JI748_13065 VOC family protein	K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D      JI748_10950 fumarylacetoacetate hydrolase family protein	K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C    00633 Nitrotoluene degradation [PATH:drh00633]
D      JI748_12005 alkene reductase	K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C    00642 Ethylbenzene degradation
C    00643 Styrene degradation [PATH:drh00643]
D      JI748_08745 fumarylacetoacetate hydrolase family protein	K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D      JI748_13065 VOC family protein	K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C    00791 Atrazine degradation [PATH:drh00791]
D      JI748_06665 biotin-dependent carboxyltransferase family protein	K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D      JI748_03735 ureC; urease subunit alpha	K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D      JI748_03755 urease subunit beta	K01429 ureB; urease subunit beta [EC:3.5.1.5]
D      JI748_03765 urease subunit gamma	K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C    00930 Caprolactam degradation [PATH:drh00930]
D      JI748_16550 SMP-30/gluconolactonase/LRE family protein	K01053 gnl; gluconolactonase [EC:3.1.1.17]
D      JI748_00595 enoyl-CoA hydratase/isomerase family protein	K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C    00363 Bisphenol degradation
C    00621 Dioxin degradation
D      JI748_10950 fumarylacetoacetate hydrolase family protein	K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C    00626 Naphthalene degradation [PATH:drh00626]
D      JI748_05275 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C    00624 Polycyclic aromatic hydrocarbon degradation
D      JI748_03195 pcaG; protocatechuate 3,4-dioxygenase subunit alpha	K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D      JI748_03190 pcaH; protocatechuate 3,4-dioxygenase subunit beta	K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C    00365 Furfural degradation
C    00984 Steroid degradation
C    00980 Metabolism of xenobiotics by cytochrome P450
C    00982 Drug metabolism - cytochrome P450
C    00983 Drug metabolism - other enzymes
B
B  09112 Not included in regular maps
C    09113 Global maps only
#
A09120 Genetic Information Processing
B
B  09121 Transcription
C    03020 RNA polymerase [PATH:drh03020]
D      JI748_05390 rpoB; DNA-directed RNA polymerase subunit beta	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D      JI748_05395 rpoC; DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D      JI748_05560 DNA-directed RNA polymerase subunit alpha	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D      JI748_08160 DNA-directed RNA polymerase subunit omega	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C    03022 Basal transcription factors
C    03040 Spliceosome
B
B  09122 Translation
C    03010 Ribosome [PATH:drh03010]
D      JI748_14440 rpsA; 30S ribosomal protein S1	K02945 RP-S1; small subunit ribosomal protein S1
D      JI748_05775 rpsB; 30S ribosomal protein S2	K02967 RP-S2; small subunit ribosomal protein S2
D      JI748_05470 rpsC; 30S ribosomal protein S3	K02982 RP-S3; small subunit ribosomal protein S3
D      JI748_04665 rpsD; 30S ribosomal protein S4	K02986 RP-S4; small subunit ribosomal protein S4
D      JI748_05525 rpsE; 30S ribosomal protein S5	K02988 RP-S5; small subunit ribosomal protein S5
D      JI748_08415 rpsF; 30S ribosomal protein S6	K02990 RP-S6; small subunit ribosomal protein S6
D      JI748_05420 rpsG; 30S ribosomal protein S7	K02992 RP-S7; small subunit ribosomal protein S7
D      JI748_05510 rpsH; 30S ribosomal protein S8	K02994 RP-S8; small subunit ribosomal protein S8
D      JI748_07905 rpsI; 30S ribosomal protein S9	K02996 RP-S9; small subunit ribosomal protein S9
D      JI748_05435 rpsJ; 30S ribosomal protein S10	K02946 RP-S10; small subunit ribosomal protein S10
D      JI748_05555 rpsK; 30S ribosomal protein S11	K02948 RP-S11; small subunit ribosomal protein S11
D      JI748_05415 30S ribosomal protein S12	K02950 RP-S12; small subunit ribosomal protein S12
D      JI748_05550 rpsM; 30S ribosomal protein S13	K02952 RP-S13; small subunit ribosomal protein S13
D      JI748_05505 rpsN; 30S ribosomal protein S14	K02954 RP-S14; small subunit ribosomal protein S14
D      JI748_14675 rpsO; 30S ribosomal protein S15	K02956 RP-S15; small subunit ribosomal protein S15
D      JI748_15875 rpsP; 30S ribosomal protein S16	K02959 RP-S16; small subunit ribosomal protein S16
D      JI748_05485 rpsQ; 30S ribosomal protein S17	K02961 RP-S17; small subunit ribosomal protein S17
D      JI748_08420 30S ribosomal protein S18	K02963 RP-S18; small subunit ribosomal protein S18
D      JI748_05460 rpsS; 30S ribosomal protein S19	K02965 RP-S19; small subunit ribosomal protein S19
D      JI748_14220 rpsT; 30S ribosomal protein S20	K02968 RP-S20; small subunit ribosomal protein S20
D      JI748_00745 30S ribosomal protein S21	K02970 RP-S21; small subunit ribosomal protein S21
D      JI748_05375 rplA; 50S ribosomal protein L1	K02863 RP-L1; large subunit ribosomal protein L1
D      JI748_05455 rplB; 50S ribosomal protein L2	K02886 RP-L2; large subunit ribosomal protein L2
D      JI748_05440 rplC; 50S ribosomal protein L3	K02906 RP-L3; large subunit ribosomal protein L3
D      JI748_05445 rplD; 50S ribosomal protein L4	K02926 RP-L4; large subunit ribosomal protein L4
D      JI748_05500 rplE; 50S ribosomal protein L5	K02931 RP-L5; large subunit ribosomal protein L5
D      JI748_05515 rplF; 50S ribosomal protein L6	K02933 RP-L6; large subunit ribosomal protein L6
D      JI748_05385 rplL; 50S ribosomal protein L7/L12	K02935 RP-L7; large subunit ribosomal protein L7/L12
D      JI748_08425 rplI; 50S ribosomal protein L9	K02939 RP-L9; large subunit ribosomal protein L9
D      JI748_05380 rplJ; 50S ribosomal protein L10	K02864 RP-L10; large subunit ribosomal protein L10
D      JI748_05370 rplK; 50S ribosomal protein L11	K02867 RP-L11; large subunit ribosomal protein L11
D      JI748_07910 rplM; 50S ribosomal protein L13	K02871 RP-L13; large subunit ribosomal protein L13
D      JI748_05490 rplN; 50S ribosomal protein L14	K02874 RP-L14; large subunit ribosomal protein L14
D      JI748_05535 50S ribosomal protein L15	K02876 RP-L15; large subunit ribosomal protein L15
D      JI748_05475 rplP; 50S ribosomal protein L16	K02878 RP-L16; large subunit ribosomal protein L16
D      JI748_05565 rplQ; 50S ribosomal protein L17	K02879 RP-L17; large subunit ribosomal protein L17
D      JI748_05520 rplR; 50S ribosomal protein L18	K02881 RP-L18; large subunit ribosomal protein L18
D      JI748_15525 rplS; 50S ribosomal protein L19	K02884 RP-L19; large subunit ribosomal protein L19
D      JI748_14585 rplT; 50S ribosomal protein L20	K02887 RP-L20; large subunit ribosomal protein L20
D      JI748_16255 rplU; 50S ribosomal protein L21	K02888 RP-L21; large subunit ribosomal protein L21
D      JI748_05465 rplV; 50S ribosomal protein L22	K02890 RP-L22; large subunit ribosomal protein L22
D      JI748_05450 50S ribosomal protein L23	K02892 RP-L23; large subunit ribosomal protein L23
D      JI748_05495 rplX; 50S ribosomal protein L24	K02895 RP-L24; large subunit ribosomal protein L24
D      JI748_02365 50S ribosomal protein L25/general stress protein Ctc	K02897 RP-L25; large subunit ribosomal protein L25
D      JI748_16250 rpmA; 50S ribosomal protein L27	K02899 RP-L27; large subunit ribosomal protein L27
D      JI748_17135 rpmB; 50S ribosomal protein L28	K02902 RP-L28; large subunit ribosomal protein L28
D      JI748_05480 rpmC; 50S ribosomal protein L29	K02904 RP-L29; large subunit ribosomal protein L29
D      JI748_05530 rpmD; 50S ribosomal protein L30	K02907 RP-L30; large subunit ribosomal protein L30
D      JI748_00840 rpmE; 50S ribosomal protein L31	K02909 RP-L31; large subunit ribosomal protein L31
D      JI748_16840 50S ribosomal protein L32	K02911 RP-L32; large subunit ribosomal protein L32
D      JI748_06065 rpmG; 50S ribosomal protein L33	K02913 RP-L33; large subunit ribosomal protein L33
D      JI748_01530 rpmH; 50S ribosomal protein L34	K02914 RP-L34; large subunit ribosomal protein L34
D      JI748_14590 rpmI; 50S ribosomal protein L35	K02916 RP-L35; large subunit ribosomal protein L35
D      JI748_00645 ykgO; type B 50S ribosomal protein L36	K02919 RP-L36; large subunit ribosomal protein L36
D      JI748_17300 16S ribosomal RNA	K01977 16SrRNA; 16S ribosomal RNA
D      JI748_17315 23S ribosomal RNA	K01980 23SrRNA; 23S ribosomal RNA
D      JI748_17320 rrf; 5S ribosomal RNA	K01985 5SrRNA; 5S ribosomal RNA
C    00970 Aminoacyl-tRNA biosynthesis [PATH:drh00970]
D      JI748_15995 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      JI748_11895 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      JI748_07555 tRNA-Cys	K14222 tRNA-Cys; tRNA Cys
D      JI748_12650 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      JI748_05325 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      JI748_10660 tRNA-His	K14226 tRNA-His; tRNA His
D      JI748_17305 tRNA-Ile	K14227 tRNA-Ile; tRNA Ile
D      JI748_07230 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      JI748_04280 tRNA-Lys	K14229 tRNA-Lys; tRNA Lys
D      JI748_01155 tRNA-Met	K14230 tRNA-Met; tRNA Met
D      JI748_11900 tRNA-Phe	K14231 tRNA-Phe; tRNA Phe
D      JI748_07965 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      JI748_09750 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      JI748_07640 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      JI748_05255 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      JI748_05335 tRNA-Trp	K14235 tRNA-Trp; tRNA Trp
D      JI748_05320 tRNA-Tyr	K14236 tRNA-Tyr; tRNA Tyr
D      JI748_05840 glutamate--tRNA ligase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      JI748_08755 glutamate--tRNA ligase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      JI748_06495 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D      JI748_08580 amidase	K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D      JI748_06470 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D      JI748_06510 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D      JI748_04615 alaS; alanine--tRNA ligase	K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D      JI748_06410 aspS; aspartate--tRNA ligase	K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D      JI748_09975 glycine--tRNA ligase subunit alpha	K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D      JI748_09960 glycine--tRNA ligase subunit beta	K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D      JI748_05020 thrS; threonine--tRNA ligase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      JI748_07455 serS; serine--tRNA ligase	K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D      JI748_08740 cysteine--tRNA ligase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      JI748_05215 endo alpha-1,4 polygalactosaminidase	K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16]
D      JI748_06270 methionine--tRNA ligase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D      JI748_12345 methionyl-tRNA formyltransferase	K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D      JI748_07525 valine--tRNA ligase	K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D      JI748_15500 leucine--tRNA ligase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      JI748_10555 isoleucine--tRNA ligase	K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D      JI748_12615 lysine--tRNA ligase	K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D      JI748_07490 arginine--tRNA ligase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      JI748_06830 proline--tRNA ligase	K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D      JI748_10640 histidine--tRNA ligase	K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D      JI748_14580 pheS; phenylalanine--tRNA ligase subunit alpha	K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D      JI748_14565 phenylalanine--tRNA ligase subunit beta	K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D      JI748_07320 tyrosine--tRNA ligase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      JI748_14760 trpS; tryptophan--tRNA ligase	K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C    03013 Nucleocytoplasmic transport
C    03015 mRNA surveillance pathway
C    03008 Ribosome biogenesis in eukaryotes
B
B  09123 Folding, sorting and degradation
C    03060 Protein export [PATH:drh03060]
D      JI748_05540 secY; preprotein translocase subunit SecY	K03076 secY; preprotein translocase subunit SecY
D      JI748_05360 secE; preprotein translocase subunit SecE	K03073 secE; preprotein translocase subunit SecE
D      JI748_06195 secG; preprotein translocase subunit SecG	K03075 secG; preprotein translocase subunit SecG
D      JI748_07430 secD; protein translocase subunit SecD	K12257 secDF; SecD/SecF fusion protein
D      JI748_07435 yajC; preprotein translocase subunit YajC	K03210 yajC; preprotein translocase subunit YajC
D      JI748_01540 yidC; membrane protein insertase YidC	K03217 yidC; YidC/Oxa1 family membrane protein insertase
D      JI748_17060 secA; preprotein translocase subunit SecA	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      JI748_15430 secB; protein-export chaperone SecB	K03071 secB; preprotein translocase subunit SecB
D      JI748_15870 ffh; signal recognition particle protein	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D      JI748_12305 ffs; signal recognition particle sRNA small type	K01983 ffs; SRP RNA
D      JI748_15835 ftsY; signal recognition particle-docking protein FtsY	K03110 ftsY; fused signal recognition particle receptor
D      JI748_07470 twin-arginine translocase TatA/TatE family subunit	K03116 tatA; sec-independent protein translocase protein TatA
D      JI748_07465 tatB; twin-arginine translocase subunit TatB	K03117 tatB; sec-independent protein translocase protein TatB
D      JI748_07460 tatC; twin-arginine translocase subunit TatC	K03118 tatC; sec-independent protein translocase protein TatC
D      JI748_08140 lepB; signal peptidase I	K03100 lepB; signal peptidase I [EC:3.4.21.89]
D      JI748_03345 lspA; signal peptidase II	K03101 lspA; signal peptidase II [EC:3.4.23.36]
D      JI748_10550 lspA; signal peptidase II	K03101 lspA; signal peptidase II [EC:3.4.23.36]
C    04141 Protein processing in endoplasmic reticulum
C    04130 SNARE interactions in vesicular transport
C    04120 Ubiquitin mediated proteolysis
C    04122 Sulfur relay system [PATH:drh04122]
D      JI748_07310 aminotransferase class V-fold PLP-dependent enzyme	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      JI748_01980 sseA; 3-mercaptopyruvate sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      JI748_12095 sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      JI748_12110 hypothetical protein	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      JI748_07385 sulfurtransferase TusA family protein	K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D      JI748_01085 mnmA; tRNA 2-thiouridine(34) synthase MnmA	K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D      JI748_02430 molybdenum cofactor biosynthesis protein MoaE	K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D      JI748_08800 moaA; GTP 3',8-cyclase MoaA	K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D      JI748_02435 MoaD/ThiS family protein	K03636 moaD; sulfur-carrier protein
D      JI748_06160 moaC; cyclic pyranopterin monophosphate synthase MoaC	K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D      JI748_10030 moaB; molybdenum cofactor biosynthesis protein B	K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
C    03050 Proteasome
C    03018 RNA degradation [PATH:drh03018]
D      JI748_16185 RNA pyrophosphohydrolase	K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D      JI748_05935 ribonuclease E/G	K08300 rne; ribonuclease E [EC:3.1.26.12]
D      JI748_06215 eno; phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      JI748_14670 pnp; polyribonucleotide nucleotidyltransferase	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D      JI748_02085 DEAD/DEAH box helicase	K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D      JI748_06080 rnr; ribonuclease R	K12573 rnr; ribonuclease R [EC:3.1.13.1]
D      JI748_08310 DEAD/DEAH box helicase	K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D      JI748_10295 recQ; DNA helicase RecQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D      JI748_15465 rho; transcription termination factor Rho	K03628 rho; transcription termination factor Rho
D      JI748_06845 ribonuclease J	K12574 rnj; ribonuclease J [EC:3.1.-.-]
D      JI748_15280 dnaK; molecular chaperone DnaK	K04043 dnaK; molecular chaperone DnaK
D      JI748_10605 groL; chaperonin GroEL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D      JI748_06295 hfq; RNA chaperone Hfq	K03666 hfq; host factor-I protein
D      JI748_06425 RNA degradosome polyphosphate kinase	K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D      JI748_13040 ppk2; polyphosphate kinase 2	K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D      JI748_02270 CCA tRNA nucleotidyltransferase	K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B  09124 Replication and repair
C    03030 DNA replication [PATH:drh03030]
D      JI748_15435 dnaQ; DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D      JI748_05770 dnaE; DNA polymerase III subunit alpha	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      JI748_12310 DNA polymerase III subunit gamma/tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D      JI748_06265 AAA family ATPase	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D      JI748_15495 holA; DNA polymerase III subunit delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D      JI748_08345 DNA polymerase III subunit chi	K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D      JI748_14235 DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D      JI748_08435 replicative DNA helicase	K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D      JI748_02870 DNA primase	K02316 dnaG; DNA primase [EC:2.7.7.101]
D      JI748_05710 ssb; single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein
D      JI748_09950 rnhA; ribonuclease HI	K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D      JI748_10065 ribonuclease HII	K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D      JI748_13305 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      JI748_04045 ligA; NAD-dependent DNA ligase LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C    03410 Base excision repair [PATH:drh03410]
D      JI748_15335 nth; endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D      JI748_10080 mutY; A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D      JI748_13070 DNA-3-methyladenine glycosylase	K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D      JI748_14215 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D      JI748_16980 DNA-3-methyladenine glycosylase 2 family protein	K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D      JI748_13240 DNA-3-methyladenine glycosylase I	K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D      JI748_01160 UdgX family uracil-DNA binding protein	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D      JI748_10010 uracil-DNA glycosylase	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D      JI748_04220 xth; exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D      JI748_07505 xth; exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D      JI748_15520 exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D      JI748_13305 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      JI748_07795 recJ; single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      JI748_04045 ligA; NAD-dependent DNA ligase LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C    03420 Nucleotide excision repair [PATH:drh03420]
D      JI748_06720 mfd; transcription-repair coupling factor	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D      JI748_09635 DEAD/DEAH box helicase	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D      JI748_05705 uvrA; excinuclease ABC subunit UvrA	K03701 uvrA; excinuclease ABC subunit A
D      JI748_02540 uvrB; excinuclease ABC subunit UvrB	K03702 uvrB; excinuclease ABC subunit B
D      JI748_02455 uvrC; excinuclease ABC subunit UvrC	K03703 uvrC; excinuclease ABC subunit C
D      JI748_04075 UvrD-helicase domain-containing protein	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      JI748_13625 ATP-dependent helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      JI748_13305 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      JI748_04045 ligA; NAD-dependent DNA ligase LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C    03430 Mismatch repair [PATH:drh03430]
D      JI748_14775 mutS; DNA mismatch repair protein MutS	K03555 mutS; DNA mismatch repair protein MutS
D      JI748_10395 mutL; DNA mismatch repair endonuclease MutL	K03572 mutL; DNA mismatch repair protein MutL
D      JI748_04075 UvrD-helicase domain-containing protein	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      JI748_13625 ATP-dependent helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      JI748_10240 exodeoxyribonuclease VII large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D      JI748_10805 exodeoxyribonuclease VII small subunit	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D      JI748_07795 recJ; single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      JI748_05710 ssb; single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein
D      JI748_05770 dnaE; DNA polymerase III subunit alpha	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      JI748_14235 DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D      JI748_12310 DNA polymerase III subunit gamma/tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D      JI748_15495 holA; DNA polymerase III subunit delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D      JI748_06265 AAA family ATPase	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D      JI748_15435 dnaQ; DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D      JI748_08345 DNA polymerase III subunit chi	K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D      JI748_04045 ligA; NAD-dependent DNA ligase LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C    03440 Homologous recombination [PATH:drh03440]
D      JI748_07795 recJ; single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      JI748_05710 ssb; single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein
D      JI748_14240 recF; DNA replication/repair protein RecF	K03629 recF; DNA replication and repair protein RecF
D      JI748_08125 recO; DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O)
D      JI748_12320 recR; recombination protein RecR	K06187 recR; recombination protein RecR
D      JI748_04610 recA; recombinase RecA	K03553 recA; recombination protein RecA
D      JI748_13305 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      JI748_01455 ruvA; Holliday junction branch migration protein RuvA	K03550 ruvA; holliday junction DNA helicase RuvA
D      JI748_01460 ruvB; Holliday junction branch migration DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D      JI748_01450 ruvC; crossover junction endodeoxyribonuclease RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D      JI748_06730 recG; ATP-dependent DNA helicase RecG	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D      JI748_05770 dnaE; DNA polymerase III subunit alpha	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      JI748_14235 DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D      JI748_12310 DNA polymerase III subunit gamma/tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D      JI748_15495 holA; DNA polymerase III subunit delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D      JI748_06265 AAA family ATPase	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D      JI748_15435 dnaQ; DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D      JI748_08345 DNA polymerase III subunit chi	K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D      JI748_16135 primosomal protein N'	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C    03450 Non-homologous end-joining [PATH:drh03450]
D      JI748_09835 Ku protein	K10979 ku; DNA end-binding protein Ku
D      JI748_09830 ligD; DNA ligase D	K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C    03460 Fanconi anemia pathway
B
B  09126 Chromosome
C    03082 ATP-dependent chromatin remodeling
C    03083 Polycomb repressive complex
B
B  09125 Information processing in viruses
C    03230 Viral genome structure
C    03240 Viral replication
C    03250 Viral life cycle - HIV-1
C    03260 Virion - Human immunodeficiency virus
C    03271 Virion - Rotavirus
C    03262 Virion - Coronavirus
C    03261 Virion - Influenza virus
C    03263 Virion - Enterovirus
C    03264 Virion - Flavivirus
C    03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C    03272 Virion - Hepatitis viruses
D      JI748_07015 S9 family peptidase	K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C    03266 Virion - Herpesvirus
C    03268 Virion - Orthopoxvirus
C    03267 Virion - Adenovirus
C    03259 Virion - Bacteriophages T4 and T7
C    03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B  09131 Membrane transport
C    02010 ABC transporters [PATH:drh02010]
D      JI748_05630 sulfate ABC transporter substrate-binding protein	K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D      JI748_03595 sulfate ABC transporter substrate-binding protein	K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D      JI748_03605 cysT; sulfate ABC transporter permease subunit CysT	K02046 cysU; sulfate/thiosulfate transport system permease protein
D      JI748_05625 cysT; sulfate ABC transporter permease subunit CysT	K02046 cysU; sulfate/thiosulfate transport system permease protein
D      JI748_03610 cysW; sulfate ABC transporter permease subunit CysW	K02047 cysW; sulfate/thiosulfate transport system permease protein
D      JI748_05620 cysW; sulfate ABC transporter permease subunit CysW	K02047 cysW; sulfate/thiosulfate transport system permease protein
D      JI748_03615 sulfate/molybdate ABC transporter ATP-binding protein	K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D      JI748_12025 tauA; taurine ABC transporter substrate-binding protein	K15551 tauA; taurine transport system substrate-binding protein
D      JI748_12015 ABC transporter permease subunit	K15552 tauC; taurine transport system permease protein
D      JI748_12020 ATP-binding cassette domain-containing protein	K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D      JI748_00310 modA; molybdate ABC transporter substrate-binding protein	K02020 modA; molybdate transport system substrate-binding protein
D      JI748_00315 modB; molybdate ABC transporter permease subunit	K02018 modB; molybdate transport system permease protein
D      JI748_11790 extracellular solute-binding protein	K02012 afuA; iron(III) transport system substrate-binding protein
D      JI748_11805 extracellular solute-binding protein	K02012 afuA; iron(III) transport system substrate-binding protein
D      JI748_16385 extracellular solute-binding protein	K02012 afuA; iron(III) transport system substrate-binding protein
D      JI748_11780 iron ABC transporter permease	K02011 afuB; iron(III) transport system permease protein
D      JI748_11795 iron ABC transporter permease	K02011 afuB; iron(III) transport system permease protein
D      JI748_16380 iron ABC transporter permease	K02011 afuB; iron(III) transport system permease protein
D      JI748_11785 ABC transporter ATP-binding protein	K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D      JI748_11800 ABC transporter ATP-binding protein	K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D      JI748_16375 ABC transporter ATP-binding protein	K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D      JI748_00855 thiamine ABC transporter substrate binding subunit	K02064 thiB; thiamine transport system substrate-binding protein
D      JI748_00860 hypothetical protein	K02063 thiP; thiamine transport system permease protein
D      JI748_00865 ATP-binding cassette domain-containing protein	K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D      JI748_16610 polyamine ABC transporter substrate-binding protein	K11073 potF; putrescine transport system substrate-binding protein
D      JI748_16595 ABC transporter permease subunit	K11074 potI; putrescine transport system permease protein
D      JI748_16600 ABC transporter permease subunit	K11075 potH; putrescine transport system permease protein
D      JI748_16605 potA; polyamine ABC transporter ATP-binding protein	K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D      JI748_12125 proX; glycine betaine/L-proline ABC transporter substrate-binding protein ProX	K02002 proX; glycine betaine/proline transport system substrate-binding protein
D      JI748_16765 hypothetical protein	K02002 proX; glycine betaine/proline transport system substrate-binding protein
D      JI748_12120 proline/glycine betaine ABC transporter permease	K02001 proW; glycine betaine/proline transport system permease protein
D      JI748_12115 glycine betaine/L-proline ABC transporter ATP-binding protein	K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D      JI748_03100 ABC transporter substrate-binding protein	K05845 opuC; osmoprotectant transport system substrate-binding protein
D      JI748_07350 ABC transporter substrate-binding protein	K05845 opuC; osmoprotectant transport system substrate-binding protein
D      JI748_07355 ABC transporter permease	K05846 opuBD; osmoprotectant transport system permease protein
D      JI748_07365 ABC transporter permease	K05846 opuBD; osmoprotectant transport system permease protein
D      JI748_07360 ABC transporter ATP-binding protein	K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D      JI748_00190 ABC transporter ATP-binding protein	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_02025 ABC transporter ATP-binding protein	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_11310 ABC transporter ATP-binding protein	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_12955 ABC transporter ATP-binding protein	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_13090 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_13955 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_00240 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_07675 ABC transporter ATP-binding protein	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_08585 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_10905 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_11035 ABC transporter ATP-binding protein	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_11080 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_12875 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_16325 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_00175 extracellular solute-binding protein	K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D      JI748_11315 extracellular solute-binding protein	K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D      JI748_00180 sugar ABC transporter permease	K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D      JI748_11320 sugar ABC transporter permease	K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D      JI748_00185 carbohydrate ABC transporter permease	K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D      JI748_11325 carbohydrate ABC transporter permease	K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D      JI748_07975 sugar ABC transporter substrate-binding protein	K10188 lacE; lactose/L-arabinose transport system substrate-binding protein
D      JI748_07980 sugar ABC transporter permease	K10189 lacF; lactose/L-arabinose transport system permease protein
D      JI748_07985 carbohydrate ABC transporter permease	K10190 lacG; lactose/L-arabinose transport system permease protein
D      JI748_07990 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10191 lacK; lactose/L-arabinose transport system ATP-binding protein
D      JI748_12940 sugar ABC transporter substrate-binding protein	K10227 smoE; polyol transport system substrate-binding protein
D      JI748_12945 sugar ABC transporter permease	K10228 smoF; polyol transport system permease protein
D      JI748_12950 carbohydrate ABC transporter permease	K10229 smoG; polyol transport system permease protein
D      JI748_00255 hypothetical protein	K10232 aglE; alpha-glucoside transport system substrate-binding protein
D      JI748_00250 sugar ABC transporter permease	K10233 aglF; alpha-glucoside transport system permease protein
D      JI748_00245 carbohydrate ABC transporter permease	K10234 aglG; alpha-glucoside transport system permease protein
D      JI748_10920 extracellular solute-binding protein	K17318 lplA; putative aldouronate transport system substrate-binding protein
D      JI748_10930 sugar ABC transporter permease	K17319 lplB; putative aldouronate transport system permease protein
D      JI748_10925 carbohydrate ABC transporter permease	K17320 lplC; putative aldouronate transport system permease protein
D      JI748_02010 ABC transporter substrate-binding protein	K10236 thuE; trehalose/maltose transport system substrate-binding protein
D      JI748_02015 sugar ABC transporter permease	K10237 thuF; trehalose/maltose transport system permease protein
D      JI748_02020 carbohydrate ABC transporter permease	K10238 thuG; trehalose/maltose transport system permease protein
D      JI748_01950 sugar-binding protein	K10546 chvE; putative multiple sugar transport system substrate-binding protein
D      JI748_12765 sugar-binding protein	K10546 chvE; putative multiple sugar transport system substrate-binding protein
D      JI748_01960 sugar ABC transporter permease	K10547 gguB; putative multiple sugar transport system permease protein
D      JI748_01955 ATP-binding cassette domain-containing protein	K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_02180 BMP family ABC transporter substrate-binding protein	K07335 bmpA; basic membrane protein A and related proteins
D      JI748_11140 BMP family protein	K07335 bmpA; basic membrane protein A and related proteins
D      JI748_12520 BMP family ABC transporter substrate-binding protein	K07335 bmpA; basic membrane protein A and related proteins
D      JI748_02170 ABC transporter permease	K23535 nupB; general nucleoside transport system permease protein
D      JI748_11130 ABC transporter permease	K23535 nupB; general nucleoside transport system permease protein
D      JI748_12510 ABC transporter permease	K23535 nupB; general nucleoside transport system permease protein
D      JI748_02175 ABC transporter permease	K23536 nupC; general nucleoside transport system permease protein
D      JI748_11125 ABC transporter permease	K23536 nupC; general nucleoside transport system permease protein
D      JI748_12505 ABC transporter permease	K23536 nupC; general nucleoside transport system permease protein
D      JI748_02165 ABC transporter ATP-binding protein	K23537 nupA; general nucleoside transport system ATP-binding protein
D      JI748_11135 ABC transporter ATP-binding protein	K23537 nupA; general nucleoside transport system ATP-binding protein
D      JI748_12515 ABC transporter ATP-binding protein	K23537 nupA; general nucleoside transport system ATP-binding protein
D      JI748_07690 carbohydrate ABC transporter substrate-binding protein	K17315 gtsA; glucose/mannose transport system substrate-binding protein
D      JI748_16340 carbohydrate ABC transporter substrate-binding protein	K17315 gtsA; glucose/mannose transport system substrate-binding protein
D      JI748_07685 sugar ABC transporter permease	K17316 gtsB; glucose/mannose transport system permease protein
D      JI748_16335 sugar ABC transporter permease	K17316 gtsB; glucose/mannose transport system permease protein
D      JI748_07680 carbohydrate ABC transporter permease	K17317 gtsC; glucose/mannose transport system permease protein
D      JI748_16330 carbohydrate ABC transporter permease	K17317 gtsC; glucose/mannose transport system permease protein
D      JI748_09390 substrate-binding domain-containing protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_10855 substrate-binding domain-containing protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_13230 substrate-binding domain-containing protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_16425 ABC transporter substrate-binding protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_09395 ABC transporter permease	K10440 rbsC; ribose transport system permease protein
D      JI748_10860 ABC transporter permease	K10440 rbsC; ribose transport system permease protein
D      JI748_13225 ABC transporter permease	K10440 rbsC; ribose transport system permease protein
D      JI748_16430 ABC transporter permease	K10440 rbsC; ribose transport system permease protein
D      JI748_09400 sugar ABC transporter ATP-binding protein	K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D      JI748_10865 sugar ABC transporter ATP-binding protein	K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D      JI748_13215 sugar ABC transporter ATP-binding protein	K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D      JI748_16435 sugar ABC transporter ATP-binding protein	K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D      JI748_01630 ABC transporter substrate-binding protein	K23508 ytfQ; galactofuranose transport system substrate-binding protein
D      JI748_01640 ABC transporter permease	K23509 ytfT; galactofuranose transport system permease protein
D      JI748_01645 yjfF; sugar ABC transporter permease YjfF	K23509 ytfT; galactofuranose transport system permease protein
D      JI748_01635 sugar ABC transporter ATP-binding protein	K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D      JI748_09305 rhaS; rhamnose ABC transporter substrate-binding protein	K10559 rhaS; rhamnose transport system substrate-binding protein
D      JI748_09295 ABC transporter permease	K10560 rhaP; rhamnose transport system permease protein
D      JI748_09290 ABC transporter permease	K10561 rhaQ; rhamnose transport system permease protein
D      JI748_09300 sugar ABC transporter ATP-binding protein	K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_00155 D-ribose ABC transporter substrate-binding protein	K17202 eryG; erythritol transport system substrate-binding protein
D      JI748_00145 ABC transporter permease	K17203 eryF; erythritol transport system permease protein
D      JI748_00140 sugar ABC transporter ATP-binding protein	K17204 eryE; erythritol transport system ATP-binding protein
D      JI748_13220 ABC transporter permease	K17206 xltB; putative xylitol transport system permease protein
D      JI748_03640 ugpB; sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D      JI748_03635 ugpA; sn-glycerol-3-phosphate ABC transporter permease UgpA	K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D      JI748_03630 ugpE; sn-glycerol-3-phosphate ABC transporter permease UgpE	K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D      JI748_03625 sn-glycerol-3-phosphate import ATP-binding protein UgpC	K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D      JI748_02990 substrate-binding domain-containing protein	K02040 pstS; phosphate transport system substrate-binding protein
D      JI748_02985 pstC; phosphate ABC transporter permease subunit PstC	K02037 pstC; phosphate transport system permease protein
D      JI748_02980 pstA; phosphate ABC transporter permease PstA	K02038 pstA; phosphate transport system permease protein
D      JI748_02975 phosphate ABC transporter ATP-binding protein	K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D      JI748_14020 phnD; phosphonate ABC transporter substrate-binding protein	K02044 phnD; phosphonate transport system substrate-binding protein
D      JI748_14025 phnE; phosphonate ABC transporter, permease protein PhnE	K02042 phnE; phosphonate transport system permease protein
D      JI748_14030 phnE; phosphonate ABC transporter, permease protein PhnE	K02042 phnE; phosphonate transport system permease protein
D      JI748_14015 phnC; phosphonate ABC transporter ATP-binding protein	K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D      JI748_07605 transporter substrate-binding domain-containing protein	K09969 aapJ; general L-amino acid transport system substrate-binding protein
D      JI748_07625 amino acid ABC transporter substrate-binding protein	K09969 aapJ; general L-amino acid transport system substrate-binding protein
D      JI748_07620 amino acid ABC transporter permease	K09970 aapQ; general L-amino acid transport system permease protein
D      JI748_07615 amino acid ABC transporter permease	K09971 aapM; general L-amino acid transport system permease protein
D      JI748_07160 amino acid ABC transporter ATP-binding protein	K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D      JI748_07610 amino acid ABC transporter ATP-binding protein	K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D      JI748_09825 amino acid ABC transporter substrate-binding protein	K02424 tcyA; L-cystine transport system substrate-binding protein
D      JI748_09820 amino acid ABC transporter permease	K10009 tcyB; L-cystine transport system permease protein
D      JI748_09815 amino acid ABC transporter ATP-binding protein	K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D      JI748_03035 ABC transporter substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_03080 amino acid ABC transporter substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_06635 substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_16760 ABC transporter substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_06640 branched-chain amino acid ABC transporter permease	K01997 livH; branched-chain amino acid transport system permease protein
D      JI748_16745 branched-chain amino acid ABC transporter permease	K01997 livH; branched-chain amino acid transport system permease protein
D      JI748_16750 branched-chain amino acid ABC transporter permease	K01998 livM; branched-chain amino acid transport system permease protein
D      JI748_06650 ABC transporter ATP-binding protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      JI748_16735 ABC transporter ATP-binding protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      JI748_06655 ABC transporter ATP-binding protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      JI748_16740 ABC transporter ATP-binding protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      JI748_03800 urtA; urea ABC transporter substrate-binding protein	K11959 urtA; urea transport system substrate-binding protein
D      JI748_03795 urtB; urea ABC transporter permease subunit UrtB	K11960 urtB; urea transport system permease protein
D      JI748_03790 urtC; urea ABC transporter permease subunit UrtC	K11961 urtC; urea transport system permease protein
D      JI748_03785 urtD; urea ABC transporter ATP-binding protein UrtD	K11962 urtD; urea transport system ATP-binding protein
D      JI748_03780 urtE; urea ABC transporter ATP-binding subunit UrtE	K11963 urtE; urea transport system ATP-binding protein
D      JI748_00620 peptide ABC transporter substrate-binding protein	K15580 oppA; oligopeptide transport system substrate-binding protein
D      JI748_00625 ABC transporter permease subunit	K15581 oppB; oligopeptide transport system permease protein
D      JI748_00630 ABC transporter permease subunit	K15582 oppC; oligopeptide transport system permease protein
D      JI748_00635 ATP-binding cassette domain-containing protein	K15583 oppD; oligopeptide transport system ATP-binding protein
D      JI748_11860 ABC transporter ATP-binding protein	K15583 oppD; oligopeptide transport system ATP-binding protein
D      JI748_00640 ATP-binding cassette domain-containing protein	K10823 oppF; oligopeptide transport system ATP-binding protein
D      JI748_11855 ATP-binding cassette domain-containing protein	K10823 oppF; oligopeptide transport system ATP-binding protein
D      JI748_07120 peptide ABC transporter substrate-binding protein	K12368 dppA; dipeptide transport system substrate-binding protein
D      JI748_13485 ABC transporter substrate-binding protein	K12368 dppA; dipeptide transport system substrate-binding protein
D      JI748_07115 ABC transporter permease	K12369 dppB; dipeptide transport system permease protein
D      JI748_13490 ABC transporter permease subunit	K12369 dppB; dipeptide transport system permease protein
D      JI748_07110 ABC transporter permease	K12370 dppC; dipeptide transport system permease protein
D      JI748_13495 ABC transporter permease subunit	K12370 dppC; dipeptide transport system permease protein
D      JI748_07105 ABC transporter ATP-binding protein	K12371 dppD; dipeptide transport system ATP-binding protein
D      JI748_13500 ABC transporter ATP-binding protein	K12371 dppD; dipeptide transport system ATP-binding protein
D      JI748_07100 ABC transporter ATP-binding protein	K12372 dppF; dipeptide transport system ATP-binding protein
D      JI748_13505 dipeptide ABC transporter ATP-binding protein	K12372 dppF; dipeptide transport system ATP-binding protein
D      JI748_01725 ABC transporter substrate-binding protein	K13893 yejA; microcin C transport system substrate-binding protein
D      JI748_01740 microcin C ABC transporter permease YejB	K13894 yejB; microcin C transport system permease protein
D      JI748_01735 ABC transporter permease	K13895 yejE; microcin C transport system permease protein
D      JI748_01730 ABC transporter ATP-binding protein	K13896 yejF; microcin C transport system ATP-binding protein
D      JI748_07785 ABC transporter substrate-binding protein	K25287 desE; iron-desferrioxamine transport system substrate-binding protein
D      JI748_07810 ABC transporter substrate-binding protein	K25286 fagD; iron-siderophore transport system substrate-binding protein
D      JI748_07850 iron-siderophore ABC transporter substrate-binding protein	K25286 fagD; iron-siderophore transport system substrate-binding protein
D      JI748_07780 iron chelate uptake ABC transporter family permease subunit	K23186 fepD; iron-siderophore transport system permease protein
D      JI748_07845 iron ABC transporter permease	K23186 fepD; iron-siderophore transport system permease protein
D      JI748_07775 iron chelate uptake ABC transporter family permease subunit	K23187 fepG; iron-siderophore transport system permease protein
D      JI748_07840 iron ABC transporter permease	K23187 fepG; iron-siderophore transport system permease protein
D      JI748_07770 ABC transporter ATP-binding protein	K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D      JI748_10510 zinc ABC transporter substrate-binding protein	K09815 znuA; zinc transport system substrate-binding protein
D      JI748_10520 metal ABC transporter permease	K09816 znuB; zinc transport system permease protein
D      JI748_10515 metal ABC transporter ATP-binding protein	K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D      JI748_14310 metal ABC transporter substrate-binding protein	K11604 sitA; manganese/iron transport system substrate-binding protein
D      JI748_14300 metal ABC transporter permease	K11605 sitC; manganese/iron transport system permease protein
D      JI748_14295 metal ABC transporter permease	K11606 sitD; manganese/iron transport system permease protein
D      JI748_14305 manganese/iron ABC transporter ATP-binding protein	K11607 sitB; manganese/iron transport system ATP-binding protein
D      JI748_09845 biotin transporter BioY	K03523 bioY; biotin transport system substrate-specific component
D      JI748_06825 ABC transporter permease	K09808 lolC_E; lipoprotein-releasing system permease protein
D      JI748_06820 ABC transporter ATP-binding protein	K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D      JI748_15605 heme ABC transporter permease	K02195 ccmC; heme exporter protein C
D      JI748_15610 ccmB; heme exporter protein CcmB	K02194 ccmB; heme exporter protein B
D      JI748_15615 ccmA; heme ABC exporter ATP-binding protein CcmA	K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D      JI748_08350 LptF/LptG family permease	K07091 lptF; lipopolysaccharide export system permease protein
D      JI748_08355 LptF/LptG family permease	K11720 lptG; lipopolysaccharide export system permease protein
D      JI748_14540 lptB; LPS export ABC transporter ATP-binding protein	K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D      JI748_16905 ABC transporter permease	K09811 ftsX; cell division transport system permease protein
D      JI748_16910 ftsE; cell division ATP-binding protein FtsE	K09812 ftsE; cell division transport system ATP-binding protein
D      JI748_10315 ABC transporter ATP-binding protein	K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D      JI748_10310 ABC transporter ATP-binding protein	K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D      JI748_08700 ABC transporter ATP-binding protein/permease	K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D      JI748_08890 ABC transporter ATP-binding protein	K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D      JI748_08895 ABC transporter ATP-binding protein	K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D      JI748_05180 type I secretion system permease/ATPase	K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D      JI748_16280 type I secretion system permease/ATPase	K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D      JI748_09365 cydC; thiol reductant ABC exporter subunit CydC	K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D      JI748_09360 cydD; thiol reductant ABC exporter subunit CydD	K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
C    02060 Phosphotransferase system (PTS) [PATH:drh02060]
D      JI748_13430 HPr family phosphocarrier protein	K02784 ptsH; phosphocarrier protein HPr
D      JI748_13435 PTS sugar transporter subunit IIA	K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D      JI748_17255 ptsP; phosphoenolpyruvate--protein phosphotransferase	K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D      JI748_12850 PTS sugar transporter subunit IIA	K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D      JI748_14555 PTS sugar transporter subunit IIA	K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C    03070 Bacterial secretion system [PATH:drh03070]
D      JI748_07535 TolC family outer membrane protein	K12340 tolC; outer membrane protein
D      JI748_07430 secD; protein translocase subunit SecD	K12257 secDF; SecD/SecF fusion protein
D      JI748_05360 secE; preprotein translocase subunit SecE	K03073 secE; preprotein translocase subunit SecE
D      JI748_06195 secG; preprotein translocase subunit SecG	K03075 secG; preprotein translocase subunit SecG
D      JI748_05540 secY; preprotein translocase subunit SecY	K03076 secY; preprotein translocase subunit SecY
D      JI748_07435 yajC; preprotein translocase subunit YajC	K03210 yajC; preprotein translocase subunit YajC
D      JI748_01540 yidC; membrane protein insertase YidC	K03217 yidC; YidC/Oxa1 family membrane protein insertase
D      JI748_17060 secA; preprotein translocase subunit SecA	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      JI748_15835 ftsY; signal recognition particle-docking protein FtsY	K03110 ftsY; fused signal recognition particle receptor
D      JI748_15430 secB; protein-export chaperone SecB	K03071 secB; preprotein translocase subunit SecB
D      JI748_15870 ffh; signal recognition particle protein	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D      JI748_07470 twin-arginine translocase TatA/TatE family subunit	K03116 tatA; sec-independent protein translocase protein TatA
D      JI748_07465 tatB; twin-arginine translocase subunit TatB	K03117 tatB; sec-independent protein translocase protein TatB
D      JI748_07460 tatC; twin-arginine translocase subunit TatC	K03118 tatC; sec-independent protein translocase protein TatC
B
B  09132 Signal transduction
C    02020 Two-component system [PATH:drh02020]
D      JI748_13035 two-component sensor histidine kinase	K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D      JI748_02965 phoB; phosphate regulon transcriptional regulator PhoB	K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D      JI748_02990 substrate-binding domain-containing protein	K02040 pstS; phosphate transport system substrate-binding protein
D      JI748_08925 Do family serine endopeptidase	K04771 degP; serine protease Do [EC:3.4.21.107]
D      JI748_02780 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_03405 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_03485 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_00220 sensor histidine kinase KdpD	K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D      JI748_00225 response regulator	K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D      JI748_00205 kdpA; potassium-transporting ATPase subunit KdpA	K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D      JI748_00210 kdpB; potassium-transporting ATPase subunit KdpB	K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D      JI748_00215 kdpC; potassium-transporting ATPase subunit KdpC	K01548 kdpC; potassium-transporting ATPase KdpC subunit
D      JI748_01590 tripartite tricarboxylate transporter permease	K07793 tctA; putative tricarboxylic transport membrane protein
D      JI748_11730 tripartite tricarboxylate transporter permease	K07793 tctA; putative tricarboxylic transport membrane protein
D      JI748_16530 tripartite tricarboxylate transporter permease	K07793 tctA; putative tricarboxylic transport membrane protein
D      JI748_01585 tripartite tricarboxylate transporter TctB family protein	K07794 tctB; putative tricarboxylic transport membrane protein
D      JI748_11735 tripartite tricarboxylate transporter TctB family protein	K07794 tctB; putative tricarboxylic transport membrane protein
D      JI748_12040 tripartite tricarboxylate transporter TctB family protein	K07794 tctB; putative tricarboxylic transport membrane protein
D      JI748_16525 tripartite tricarboxylate transporter TctB family protein	K07794 tctB; putative tricarboxylic transport membrane protein
D      JI748_01580 tripartite tricarboxylate transporter substrate binding protein BugD	K07795 tctC; putative tricarboxylic transport membrane protein
D      JI748_12045 tripartite tricarboxylate transporter substrate binding protein	K07795 tctC; putative tricarboxylic transport membrane protein
D      JI748_16520 tripartite tricarboxylate transporter substrate binding protein	K07795 tctC; putative tricarboxylic transport membrane protein
D      JI748_07915 COX15/CtaA family protein	K02259 COX15; heme a synthase [EC:1.17.99.9]
D      JI748_14225 dnaA; chromosomal replication initiator protein DnaA	K02313 dnaA; chromosomal replication initiator protein
D      JI748_13445 sensor histidine kinase	K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D      JI748_13450 response regulator transcription factor	K14981 chvI; two-component system, OmpR family, response regulator ChvI
D      JI748_10895 CoA ester lyase	K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D      JI748_16295 response regulator transcription factor	K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D      JI748_12445 Flp family type IVb pilin	K02651 flp; pilus assembly protein Flp/PilA
D      JI748_15590 Flp family type IVb pilin	K02651 flp; pilus assembly protein Flp/PilA
D      JI748_17025 Flp family type IVb pilin	K02651 flp; pilus assembly protein Flp/PilA
D      JI748_12435 cpaB; Flp pilus assembly protein CpaB	K02279 cpaB; pilus assembly protein CpaB
D      JI748_12430 type II and III secretion system protein family protein	K02280 cpaC; pilus assembly protein CpaC
D      JI748_12425 AAA family ATPase	K02282 cpaE; pilus assembly protein CpaE
D      JI748_12420 CpaF family protein	K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D      JI748_12415 type II secretion system F family protein	K12510 tadB; tight adherence protein B
D      JI748_12410 type II secretion system F family protein	K12511 tadC; tight adherence protein C
D      JI748_14345 hypothetical protein	K27080 tadG; tight adherence protein G
D      JI748_14770 [protein-PII] uridylyltransferase	K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D      JI748_07225 P-II family nitrogen regulator	K04751 glnB; nitrogen regulatory protein P-II 1
D      JI748_06320 PAS domain-containing protein	K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D      JI748_06315 ntrC; nitrogen regulation protein NR(I)	K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D      JI748_07220 glnA; type I glutamate--ammonia ligase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      JI748_06305 PAS domain-containing sensor histidine kinase	K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D      JI748_06300 sigma-54-dependent Fis family transcriptional regulator	K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      JI748_01575 sensor histidine kinase	K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D      JI748_01570 sigma-54-dependent Fis family transcriptional regulator	K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D      JI748_14545 rpoN; RNA polymerase factor sigma-54	K03092 rpoN; RNA polymerase sigma-54 factor
D      JI748_01205 protein-glutamate O-methyltransferase	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      JI748_16695 protein-glutamate O-methyltransferase CheR	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      JI748_01215 MCP four helix bundle domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_04860 PAS domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16175 cache domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16710 HAMP domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16715 Cache 3/Cache 2 fusion domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16720 HAMP domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16725 PAS domain S-box protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_01210 chemotaxis protein CheW	K03408 cheW; purine-binding chemotaxis protein CheW
D      JI748_01220 chemotaxis protein CheW	K03408 cheW; purine-binding chemotaxis protein CheW
D      JI748_16670 purine-binding chemotaxis protein CheW	K03408 cheW; purine-binding chemotaxis protein CheW
D      JI748_01225 chemotaxis protein CheA	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      JI748_16665 chemotaxis protein CheA	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      JI748_00985 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_01230 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_16660 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_16705 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_01200 chemotaxis response regulator protein-glutamate methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      JI748_16700 chemotaxis response regulator protein-glutamate methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      JI748_03885 GAF domain-containing protein	K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D      JI748_08825 sensor histidine kinase	K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D      JI748_08905 hypothetical protein	K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D      JI748_06060 PleD family two-component system response regulator	K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D      JI748_09175 PAS domain S-box protein	K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
D      JI748_06055 response regulator	K11443 divK; two-component system, cell cycle response regulator DivK
D      JI748_04595 response regulator	K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D      JI748_00980 histidine phosphotransferase	K13588 chpT; histidine phosphotransferase ChpT
D      JI748_01000 response regulator transcription factor	K13584 ctrA; two-component system, cell cycle response regulator CtrA
D      JI748_00470 response regulator	K13589 cpdR; two-component system, cell cycle response regulator CpdR
D      JI748_03165 TRAP transporter large permease	K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D      JI748_01040 sigma-54-dependent Fis family transcriptional regulator	K10943 flrC; two-component system, response regulator FlrC
D      JI748_01240 response regulator	K13815 rpfG; two-component system, response regulator RpfG
D      JI748_14275 ActS/PrrB/RegB family redox-sensitive histidine kinase	K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D      JI748_14280 ActR/PrrA/RegA family redox response regulator transcription factor	K15012 regA; two-component system, response regulator RegA
D      JI748_02290 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit	K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D      JI748_02295 cytochrome b N-terminal domain-containing protein	K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D      JI748_02300 cytochrome c1	K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D      JI748_12385 c-type cytochrome	K08738 CYC; cytochrome c
D      JI748_09355 cytochrome ubiquinol oxidase subunit I	K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D      JI748_09350 cydB; cytochrome d ubiquinol oxidase subunit II	K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D      JI748_09345 cydX; cytochrome bd-I oxidase subunit CydX	K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D      JI748_07535 TolC family outer membrane protein	K12340 tolC; outer membrane protein
D      JI748_07935 polysaccharide export protein	K01991 wza; polysaccharide biosynthesis/export protein
D      JI748_07930 GumC family protein	K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
C    04010 MAPK signaling pathway
C    04013 MAPK signaling pathway - fly
C    04016 MAPK signaling pathway - plant
C    04011 MAPK signaling pathway - yeast
C    04012 ErbB signaling pathway
C    04014 Ras signaling pathway
C    04015 Rap1 signaling pathway
C    04310 Wnt signaling pathway
C    04330 Notch signaling pathway
C    04340 Hedgehog signaling pathway
C    04341 Hedgehog signaling pathway - fly
C    04350 TGF-beta signaling pathway
C    04390 Hippo signaling pathway
C    04391 Hippo signaling pathway - fly
C    04392 Hippo signaling pathway - multiple species
C    04370 VEGF signaling pathway
C    04371 Apelin signaling pathway
C    04630 JAK-STAT signaling pathway
C    04064 NF-kappa B signaling pathway
C    04668 TNF signaling pathway
C    04066 HIF-1 signaling pathway
C    04068 FoxO signaling pathway
C    04020 Calcium signaling pathway
C    04070 Phosphatidylinositol signaling system
C    04072 Phospholipase D signaling pathway
C    04071 Sphingolipid signaling pathway
C    04024 cAMP signaling pathway
C    04022 cGMP-PKG signaling pathway
C    04151 PI3K-Akt signaling pathway
C    04152 AMPK signaling pathway
C    04150 mTOR signaling pathway
C    04075 Plant hormone signal transduction
B
B  09133 Signaling molecules and interaction
C    04080 Neuroactive ligand-receptor interaction
C    04060 Cytokine-cytokine receptor interaction
C    04061 Viral protein interaction with cytokine and cytokine receptor
C    04512 ECM-receptor interaction
C    04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B  09141 Transport and catabolism
C    04144 Endocytosis
C    04145 Phagosome
C    04142 Lysosome
C    04146 Peroxisome
C    04140 Autophagy - animal
C    04138 Autophagy - yeast
C    04136 Autophagy - other
C    04137 Mitophagy - animal
C    04139 Mitophagy - yeast
C    04148 Efferocytosis [PATH:drh04148]
D      JI748_05575 type III PLP-dependent enzyme	K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D      JI748_02290 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit	K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B  09143 Cell growth and death
C    04110 Cell cycle
C    04111 Cell cycle - yeast
C    04112 Cell cycle - Caulobacter
C    04113 Meiosis - yeast
C    04114 Oocyte meiosis
C    04210 Apoptosis
C    04214 Apoptosis - fly
C    04215 Apoptosis - multiple species
C    04216 Ferroptosis
C    04217 Necroptosis
C    04115 p53 signaling pathway
C    04218 Cellular senescence
B
B  09144 Cellular community - eukaryotes
C    04510 Focal adhesion
C    04520 Adherens junction
C    04530 Tight junction
C    04540 Gap junction
C    04550 Signaling pathways regulating pluripotency of stem cells
B
B  09145 Cellular community - prokaryotes
C    02024 Quorum sensing [PATH:drh02024]
D      JI748_06295 hfq; RNA chaperone Hfq	K03666 hfq; host factor-I protein
D      JI748_06180 trpE; anthranilate synthase component I	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      JI748_06175 aminodeoxychorismate/anthranilate synthase component II	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D      JI748_02445 3-deoxy-7-phosphoheptulonate synthase	K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D      JI748_08775 3-deoxy-7-phosphoheptulonate synthase class II	K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D      JI748_04255 PhzF family phenazine biosynthesis protein	K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
D      JI748_00225 response regulator	K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D      JI748_02000 ABC transporter substrate-binding protein	K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D      JI748_11150 polyamine ABC transporter substrate-binding protein	K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D      JI748_01990 ABC transporter permease subunit	K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D      JI748_11160 ABC transporter permease	K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D      JI748_01995 ABC transporter permease subunit	K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D      JI748_11155 ABC transporter permease	K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D      JI748_01985 ABC transporter ATP-binding protein	K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D      JI748_11165 ABC transporter ATP-binding protein	K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D      JI748_03035 ABC transporter substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_03080 amino acid ABC transporter substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_06635 substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_16760 ABC transporter substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_06640 branched-chain amino acid ABC transporter permease	K01997 livH; branched-chain amino acid transport system permease protein
D      JI748_16745 branched-chain amino acid ABC transporter permease	K01997 livH; branched-chain amino acid transport system permease protein
D      JI748_16750 branched-chain amino acid ABC transporter permease	K01998 livM; branched-chain amino acid transport system permease protein
D      JI748_06650 ABC transporter ATP-binding protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      JI748_16735 ABC transporter ATP-binding protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      JI748_06655 ABC transporter ATP-binding protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      JI748_16740 ABC transporter ATP-binding protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      JI748_00585 long-chain fatty acid--CoA ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      JI748_01240 response regulator	K13815 rpfG; two-component system, response regulator RpfG
D      JI748_10525 transcriptional repressor	K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D      JI748_02955 DMT family transporter	K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D      JI748_02960 DMT family transporter	K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D      JI748_06795 DMT family transporter	K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D      JI748_00620 peptide ABC transporter substrate-binding protein	K15580 oppA; oligopeptide transport system substrate-binding protein
D      JI748_00625 ABC transporter permease subunit	K15581 oppB; oligopeptide transport system permease protein
D      JI748_00630 ABC transporter permease subunit	K15582 oppC; oligopeptide transport system permease protein
D      JI748_00635 ATP-binding cassette domain-containing protein	K15583 oppD; oligopeptide transport system ATP-binding protein
D      JI748_11860 ABC transporter ATP-binding protein	K15583 oppD; oligopeptide transport system ATP-binding protein
D      JI748_00640 ATP-binding cassette domain-containing protein	K10823 oppF; oligopeptide transport system ATP-binding protein
D      JI748_11855 ATP-binding cassette domain-containing protein	K10823 oppF; oligopeptide transport system ATP-binding protein
D      JI748_06990 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_07025 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_09760 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_10670 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_10985 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_11215 peptide ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_11295 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_11670 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_11875 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_12725 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_06980 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_07040 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_09775 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_10675 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_10980 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_11210 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_11290 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_11665 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_11865 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_12720 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_06975 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_07035 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_09780 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_10680 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_10975 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_11205 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_11285 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_11660 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_11870 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_12715 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_06965 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_07030 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_09765 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_10685 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_10955 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_11230 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_11280 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_11680 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_12710 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_06960 ATP-binding cassette domain-containing protein	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      JI748_09770 ABC transporter ATP-binding protein	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      JI748_11225 dipeptide ABC transporter ATP-binding protein	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      JI748_11675 ATP-binding cassette domain-containing protein	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      JI748_01540 yidC; membrane protein insertase YidC	K03217 yidC; YidC/Oxa1 family membrane protein insertase
D      JI748_07430 secD; protein translocase subunit SecD	K12257 secDF; SecD/SecF fusion protein
D      JI748_05360 secE; preprotein translocase subunit SecE	K03073 secE; preprotein translocase subunit SecE
D      JI748_06195 secG; preprotein translocase subunit SecG	K03075 secG; preprotein translocase subunit SecG
D      JI748_05540 secY; preprotein translocase subunit SecY	K03076 secY; preprotein translocase subunit SecY
D      JI748_07435 yajC; preprotein translocase subunit YajC	K03210 yajC; preprotein translocase subunit YajC
D      JI748_17060 secA; preprotein translocase subunit SecA	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      JI748_15835 ftsY; signal recognition particle-docking protein FtsY	K03110 ftsY; fused signal recognition particle receptor
D      JI748_15430 secB; protein-export chaperone SecB	K03071 secB; preprotein translocase subunit SecB
D      JI748_15870 ffh; signal recognition particle protein	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C    05111 Biofilm formation - Vibrio cholerae
C    02025 Biofilm formation - Pseudomonas aeruginosa
C    02026 Biofilm formation - Escherichia coli
B
B  09142 Cell motility
C    02030 Bacterial chemotaxis [PATH:drh02030]
D      JI748_01215 MCP four helix bundle domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_04860 PAS domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16175 cache domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16710 HAMP domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16715 Cache 3/Cache 2 fusion domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16720 HAMP domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16725 PAS domain S-box protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_09390 substrate-binding domain-containing protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_10855 substrate-binding domain-containing protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_13230 substrate-binding domain-containing protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_16425 ABC transporter substrate-binding protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_07120 peptide ABC transporter substrate-binding protein	K12368 dppA; dipeptide transport system substrate-binding protein
D      JI748_13485 ABC transporter substrate-binding protein	K12368 dppA; dipeptide transport system substrate-binding protein
D      JI748_01225 chemotaxis protein CheA	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      JI748_16665 chemotaxis protein CheA	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      JI748_01210 chemotaxis protein CheW	K03408 cheW; purine-binding chemotaxis protein CheW
D      JI748_01220 chemotaxis protein CheW	K03408 cheW; purine-binding chemotaxis protein CheW
D      JI748_16670 purine-binding chemotaxis protein CheW	K03408 cheW; purine-binding chemotaxis protein CheW
D      JI748_00985 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_01230 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_16660 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_16705 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_01200 chemotaxis response regulator protein-glutamate methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      JI748_16700 chemotaxis response regulator protein-glutamate methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      JI748_16685 chemotaxis protein CheD	K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D      JI748_01205 protein-glutamate O-methyltransferase	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      JI748_16695 protein-glutamate O-methyltransferase CheR	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      JI748_01055 fliG; flagellar motor switch protein FliG	K02410 fliG; flagellar motor switch protein FliG
D      JI748_04535 fliM; flagellar motor switch protein FliM	K02416 fliM; flagellar motor switch protein FliM
D      JI748_01045 fliN; flagellar motor switch protein FliN	K02417 fliN; flagellar motor switch protein FliN
D      JI748_05670 FliM/FliN family flagellar motor switch protein	K02417 fliN; flagellar motor switch protein FliN
D      JI748_02780 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_03405 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_03485 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_01325 peptidoglycan -binding protein	K02557 motB; chemotaxis protein MotB
D      JI748_02785 OmpA family protein	K02557 motB; chemotaxis protein MotB
C    02040 Flagellar assembly [PATH:drh02040]
D      JI748_04575 fliE; flagellar hook-basal body complex protein FliE	K02408 fliE; flagellar hook-basal body complex protein FliE
D      JI748_01060 fliF; flagellar M-ring protein FliF	K02409 fliF; flagellar M-ring protein FliF
D      JI748_01055 fliG; flagellar motor switch protein FliG	K02410 fliG; flagellar motor switch protein FliG
D      JI748_01050 hypothetical protein	K02411 fliH; flagellar assembly protein FliH
D      JI748_01005 fliI; flagellar protein export ATPase FliI	K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D      JI748_01010 fliJ; flagellar export protein FliJ	K02413 fliJ; flagellar protein FliJ
D      JI748_04530 flagellar basal body-associated FliL family protein	K02415 fliL; flagellar protein FliL
D      JI748_04535 fliM; flagellar motor switch protein FliM	K02416 fliM; flagellar motor switch protein FliM
D      JI748_01045 fliN; flagellar motor switch protein FliN	K02417 fliN; flagellar motor switch protein FliN
D      JI748_05670 FliM/FliN family flagellar motor switch protein	K02417 fliN; flagellar motor switch protein FliN
D      JI748_04555 fliP; flagellar type III secretion system pore protein FliP	K02419 fliP; flagellar biosynthesis protein FliP
D      JI748_04580 fliQ; flagellar biosynthesis protein FliQ	K02420 fliQ; flagellar biosynthesis protein FliQ
D      JI748_04585 fliR; flagellar type III secretion system protein FliR	K02421 fliR; flagellar biosynthesis protein FliR
D      JI748_01035 flhA; flagellar biosynthesis protein FlhA	K02400 flhA; flagellar biosynthesis protein FlhA
D      JI748_04590 flhB; flagellar biosynthesis protein FlhB	K02401 flhB; flagellar biosynthesis protein FlhB
D      JI748_04515 flgA; flagellar basal body P-ring formation protein FlgA	K02386 flgA; flagellar basal body P-ring formation protein FlgA
D      JI748_04565 flgB; flagellar basal body rod protein FlgB	K02387 flgB; flagellar basal-body rod protein FlgB
D      JI748_04570 flgC; flagellar basal body rod protein FlgC	K02388 flgC; flagellar basal-body rod protein FlgC
D      JI748_01075 flagellar hook assembly protein FlgD	K02389 flgD; flagellar basal-body rod modification protein FlgD
D      JI748_04430 flagellar hook-basal body complex protein	K02390 flgE; flagellar hook protein FlgE
D      JI748_04525 flgF; flagellar basal-body rod protein FlgF	K02391 flgF; flagellar basal-body rod protein FlgF
D      JI748_04520 flgG; flagellar basal-body rod protein FlgG	K02392 flgG; flagellar basal-body rod protein FlgG
D      JI748_04510 flagellar basal body L-ring protein FlgH	K02393 flgH; flagellar L-ring protein FlgH
D      JI748_04475 flagellar basal body P-ring protein FlgI	K02394 flgI; flagellar P-ring protein FlgI
D      JI748_04470 rod-binding protein	K02395 flgJ; peptidoglycan hydrolase FlgJ
D      JI748_04435 flgK; flagellar hook-associated protein FlgK	K02396 flgK; flagellar hook-associated protein 1
D      JI748_04440 hypothetical protein	K02397 flgL; flagellar hook-associated protein 3 FlgL
D      JI748_02780 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_03405 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_03485 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_01325 peptidoglycan -binding protein	K02557 motB; chemotaxis protein MotB
D      JI748_02785 OmpA family protein	K02557 motB; chemotaxis protein MotB
D      JI748_09825 amino acid ABC transporter substrate-binding protein	K02424 tcyA; L-cystine transport system substrate-binding protein
D      JI748_02875 rpoD; RNA polymerase sigma factor RpoD	K03086 rpoD; RNA polymerase primary sigma factor
D      JI748_14545 rpoN; RNA polymerase factor sigma-54	K03092 rpoN; RNA polymerase sigma-54 factor
D      JI748_01040 sigma-54-dependent Fis family transcriptional regulator	K10943 flrC; two-component system, response regulator FlrC
C    04814 Motor proteins
C    04820 Cytoskeleton in muscle cells
D      JI748_06215 eno; phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C    04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B  09151 Immune system
C    04640 Hematopoietic cell lineage
C    04610 Complement and coagulation cascades
C    04611 Platelet activation
C    04613 Neutrophil extracellular trap formation
C    04620 Toll-like receptor signaling pathway
C    04624 Toll and Imd signaling pathway
C    04621 NOD-like receptor signaling pathway
C    04622 RIG-I-like receptor signaling pathway
C    04623 Cytosolic DNA-sensing pathway
C    04625 C-type lectin receptor signaling pathway
C    04650 Natural killer cell mediated cytotoxicity
C    04612 Antigen processing and presentation
C    04660 T cell receptor signaling pathway
C    04658 Th1 and Th2 cell differentiation
C    04659 Th17 cell differentiation
C    04657 IL-17 signaling pathway
C    04662 B cell receptor signaling pathway
C    04664 Fc epsilon RI signaling pathway
C    04666 Fc gamma R-mediated phagocytosis
C    04670 Leukocyte transendothelial migration
C    04672 Intestinal immune network for IgA production
C    04062 Chemokine signaling pathway
B
B  09152 Endocrine system
C    04911 Insulin secretion
C    04910 Insulin signaling pathway
C    04922 Glucagon signaling pathway
C    04923 Regulation of lipolysis in adipocytes
C    04920 Adipocytokine signaling pathway
C    03320 PPAR signaling pathway
C    04929 GnRH secretion
C    04912 GnRH signaling pathway
C    04913 Ovarian steroidogenesis
C    04915 Estrogen signaling pathway
C    04914 Progesterone-mediated oocyte maturation
C    04917 Prolactin signaling pathway
C    04921 Oxytocin signaling pathway
C    04926 Relaxin signaling pathway
C    04935 Growth hormone synthesis, secretion and action
C    04918 Thyroid hormone synthesis
C    04919 Thyroid hormone signaling pathway
C    04928 Parathyroid hormone synthesis, secretion and action
C    04916 Melanogenesis
C    04924 Renin secretion
C    04614 Renin-angiotensin system
C    04925 Aldosterone synthesis and secretion
C    04927 Cortisol synthesis and secretion
B
B  09153 Circulatory system
C    04260 Cardiac muscle contraction
C    04261 Adrenergic signaling in cardiomyocytes
C    04270 Vascular smooth muscle contraction
B
B  09154 Digestive system
C    04970 Salivary secretion
C    04971 Gastric acid secretion
C    04972 Pancreatic secretion
C    04976 Bile secretion
C    04973 Carbohydrate digestion and absorption
C    04974 Protein digestion and absorption
C    04975 Fat digestion and absorption
C    04979 Cholesterol metabolism
C    04977 Vitamin digestion and absorption
C    04980 Cobalamin transport and metabolism [PATH:drh04980]
D      JI748_16955 cob(I)yrinic acid a,c-diamide adenosyltransferase	K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D      JI748_06245 metH; methionine synthase	K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C    04978 Mineral absorption
B
B  09155 Excretory system
C    04962 Vasopressin-regulated water reabsorption
C    04960 Aldosterone-regulated sodium reabsorption
C    04961 Endocrine and other factor-regulated calcium reabsorption
C    04964 Proximal tubule bicarbonate reclamation
C    04966 Collecting duct acid secretion
B
B  09156 Nervous system
C    04724 Glutamatergic synapse
C    04727 GABAergic synapse
C    04725 Cholinergic synapse
C    04728 Dopaminergic synapse
C    04726 Serotonergic synapse
C    04720 Long-term potentiation
C    04730 Long-term depression
C    04723 Retrograde endocannabinoid signaling
C    04721 Synaptic vesicle cycle
C    04722 Neurotrophin signaling pathway
B
B  09157 Sensory system
C    04744 Phototransduction
C    04745 Phototransduction - fly
C    04740 Olfactory transduction
C    04742 Taste transduction
C    04750 Inflammatory mediator regulation of TRP channels
B
B  09158 Development and regeneration
C    04320 Dorso-ventral axis formation
C    04360 Axon guidance
C    04361 Axon regeneration
C    04380 Osteoclast differentiation
B
B  09149 Aging
C    04211 Longevity regulating pathway
C    04212 Longevity regulating pathway - worm
C    04213 Longevity regulating pathway - multiple species
B
B  09159 Environmental adaptation
C    04710 Circadian rhythm
C    04713 Circadian entrainment
C    04711 Circadian rhythm - fly
C    04712 Circadian rhythm - plant
C    04714 Thermogenesis
C    04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B  09161 Cancer: overview
C    05200 Pathways in cancer
C    05202 Transcriptional misregulation in cancer
C    05206 MicroRNAs in cancer
C    05205 Proteoglycans in cancer
C    05204 Chemical carcinogenesis - DNA adducts
C    05207 Chemical carcinogenesis - receptor activation
C    05208 Chemical carcinogenesis - reactive oxygen species
C    05203 Viral carcinogenesis
C    05230 Central carbon metabolism in cancer
C    05231 Choline metabolism in cancer
C    05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B  09162 Cancer: specific types
C    05210 Colorectal cancer
C    05212 Pancreatic cancer
C    05225 Hepatocellular carcinoma
C    05226 Gastric cancer
C    05214 Glioma
C    05216 Thyroid cancer
C    05221 Acute myeloid leukemia
C    05220 Chronic myeloid leukemia
C    05217 Basal cell carcinoma
C    05218 Melanoma
C    05211 Renal cell carcinoma
C    05219 Bladder cancer
C    05215 Prostate cancer
C    05213 Endometrial cancer
C    05224 Breast cancer
C    05222 Small cell lung cancer
C    05223 Non-small cell lung cancer
B
B  09172 Infectious disease: viral
C    05166 Human T-cell leukemia virus 1 infection
C    05170 Human immunodeficiency virus 1 infection
C    05161 Hepatitis B
C    05160 Hepatitis C
C    05171 Coronavirus disease - COVID-19
C    05164 Influenza A
C    05162 Measles
C    05168 Herpes simplex virus 1 infection
C    05163 Human cytomegalovirus infection
C    05167 Kaposi sarcoma-associated herpesvirus infection
C    05169 Epstein-Barr virus infection
C    05165 Human papillomavirus infection
B
B  09171 Infectious disease: bacterial
C    05110 Vibrio cholerae infection
C    05120 Epithelial cell signaling in Helicobacter pylori infection
C    05130 Pathogenic Escherichia coli infection
C    05132 Salmonella infection
C    05131 Shigellosis
C    05135 Yersinia infection
C    05133 Pertussis
C    05134 Legionellosis
C    05150 Staphylococcus aureus infection
C    05152 Tuberculosis
C    05100 Bacterial invasion of epithelial cells
B
B  09174 Infectious disease: parasitic
C    05146 Amoebiasis
C    05144 Malaria
C    05145 Toxoplasmosis
C    05140 Leishmaniasis
C    05142 Chagas disease
C    05143 African trypanosomiasis
B
B  09163 Immune disease
C    05310 Asthma
C    05322 Systemic lupus erythematosus
C    05323 Rheumatoid arthritis
C    05320 Autoimmune thyroid disease
C    05321 Inflammatory bowel disease
C    05330 Allograft rejection
C    05332 Graft-versus-host disease
C    05340 Primary immunodeficiency
B
B  09164 Neurodegenerative disease
C    05010 Alzheimer disease
C    05012 Parkinson disease
C    05014 Amyotrophic lateral sclerosis
C    05016 Huntington disease
C    05017 Spinocerebellar ataxia
C    05020 Prion disease
C    05022 Pathways of neurodegeneration - multiple diseases
B
B  09165 Substance dependence
C    05030 Cocaine addiction
C    05031 Amphetamine addiction
C    05032 Morphine addiction
C    05033 Nicotine addiction
C    05034 Alcoholism
B
B  09166 Cardiovascular disease
C    05417 Lipid and atherosclerosis
C    05418 Fluid shear stress and atherosclerosis
C    05410 Hypertrophic cardiomyopathy
C    05412 Arrhythmogenic right ventricular cardiomyopathy
C    05414 Dilated cardiomyopathy
C    05415 Diabetic cardiomyopathy
C    05416 Viral myocarditis
B
B  09167 Endocrine and metabolic disease
C    04930 Type II diabetes mellitus
C    04940 Type I diabetes mellitus
C    04950 Maturity onset diabetes of the young
C    04936 Alcoholic liver disease
C    04932 Non-alcoholic fatty liver disease
C    04931 Insulin resistance
C    04933 AGE-RAGE signaling pathway in diabetic complications
C    04934 Cushing syndrome
B
B  09175 Drug resistance: antimicrobial
C    01501 beta-Lactam resistance [PATH:drh01501]
D      JI748_04325 glycoside hydrolase family 3 protein	K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D      JI748_14515 glycoside hydrolase family 3 protein	K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D      JI748_00620 peptide ABC transporter substrate-binding protein	K15580 oppA; oligopeptide transport system substrate-binding protein
D      JI748_00625 ABC transporter permease subunit	K15581 oppB; oligopeptide transport system permease protein
D      JI748_00630 ABC transporter permease subunit	K15582 oppC; oligopeptide transport system permease protein
D      JI748_00635 ATP-binding cassette domain-containing protein	K15583 oppD; oligopeptide transport system ATP-binding protein
D      JI748_11860 ABC transporter ATP-binding protein	K15583 oppD; oligopeptide transport system ATP-binding protein
D      JI748_00640 ATP-binding cassette domain-containing protein	K10823 oppF; oligopeptide transport system ATP-binding protein
D      JI748_11855 ATP-binding cassette domain-containing protein	K10823 oppF; oligopeptide transport system ATP-binding protein
D      JI748_07535 TolC family outer membrane protein	K12340 tolC; outer membrane protein
D      JI748_05945 penicillin-binding protein 1A	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_09125 PBP1A family penicillin-binding protein	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_14260 PBP1A family penicillin-binding protein	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_03390 penicillin-binding protein 2	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D      JI748_03955 penicillin-binding protein 2	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C    01502 Vancomycin resistance [PATH:drh01502]
D      JI748_04005 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      JI748_08440 alr; alanine racemase	K01775 alr; alanine racemase [EC:5.1.1.1]
D      JI748_03965 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D      JI748_03970 phospho-N-acetylmuramoyl-pentapeptide-transferase	K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D      JI748_03995 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C    01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:drh01503]
D      JI748_05940 N-acetylmuramoyl-L-alanine amidase	K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D      JI748_08925 Do family serine endopeptidase	K04771 degP; serine protease Do [EC:3.4.21.107]
D      JI748_07535 TolC family outer membrane protein	K12340 tolC; outer membrane protein
D      JI748_05825 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B  09176 Drug resistance: antineoplastic
C    01521 EGFR tyrosine kinase inhibitor resistance
C    01524 Platinum drug resistance
C    01523 Antifolate resistance
C    01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B  09181 Protein families: metabolism
C    01000 Enzymes [BR:drh01000]
C    01001 Protein kinases [BR:drh01001]
D      JI748_07930 GumC family protein	K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D      JI748_05045 AAA family ATPase	K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D      JI748_13035 two-component sensor histidine kinase	K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D      JI748_00220 sensor histidine kinase KdpD	K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D      JI748_13445 sensor histidine kinase	K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D      JI748_06320 PAS domain-containing protein	K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D      JI748_06305 PAS domain-containing sensor histidine kinase	K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D      JI748_01575 sensor histidine kinase	K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D      JI748_01225 chemotaxis protein CheA	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      JI748_16665 chemotaxis protein CheA	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      JI748_03885 GAF domain-containing protein	K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D      JI748_08825 sensor histidine kinase	K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D      JI748_08905 hypothetical protein	K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D      JI748_09175 PAS domain S-box protein	K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
D      JI748_04595 response regulator	K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D      JI748_14275 ActS/PrrB/RegB family redox-sensitive histidine kinase	K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
C    01009 Protein phosphatases and associated proteins [BR:drh01009]
D      JI748_13400 adenosylhomocysteinase	K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D      JI748_04150 serB; phosphoserine phosphatase SerB	K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C    01002 Peptidases and inhibitors [BR:drh01002]
D      JI748_03345 lspA; signal peptidase II	K03101 lspA; signal peptidase II [EC:3.4.23.36]
D      JI748_10550 lspA; signal peptidase II	K03101 lspA; signal peptidase II [EC:3.4.23.36]
D      JI748_12440 prepilin peptidase	K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D      JI748_08505 guaA; glutamine-hydrolyzing GMP synthase	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      JI748_08465 amidophosphoribosyltransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D      JI748_00425 gltB; glutamate synthase large subunit	K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D      JI748_05200 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      JI748_06735 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      JI748_08205 SIS domain-containing protein	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      JI748_10850 DJ-1/PfpI family protein	K05520 yhbO; deglycase [EC:3.5.1.124]
D      JI748_00705 L,D-transpeptidase family protein	K21470 ycbB; L,D-transpeptidase YcbB
D      JI748_03510 L,D-transpeptidase family protein	K21470 ycbB; L,D-transpeptidase YcbB
D      JI748_08080 L,D-transpeptidase family protein	K21470 ycbB; L,D-transpeptidase YcbB
D      JI748_08900 pepN; aminopeptidase N	K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D      JI748_00795 M3 family oligoendopeptidase	K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D      JI748_00545 insulinase family protein	K06972 PITRM1; presequence protease [EC:3.4.24.-]
D      JI748_12400 leucyl aminopeptidase family protein	K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D      JI748_06105 dipeptidase	K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D      JI748_12365 dapE; succinyl-diaminopimelate desuccinylase	K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D      JI748_04835 map; type I methionyl aminopeptidase	K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D      JI748_06765 map; type I methionyl aminopeptidase	K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D      JI748_04060 aminopeptidase P family protein	K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D      JI748_13045 aminopeptidase	K19689 ampS; aminopeptidase [EC:3.4.11.-]
D      JI748_04495 carboxypeptidase M32	K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D      JI748_00945 ftsH; ATP-dependent zinc metalloprotease FtsH	K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D      JI748_15580 htpX; zinc metalloprotease HtpX	K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D      JI748_05805 rseP; RIP metalloprotease RseP	K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D      JI748_08925 Do family serine endopeptidase	K04771 degP; serine protease Do [EC:3.4.21.107]
D      JI748_07015 S9 family peptidase	K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D      JI748_09245 S9 family peptidase	K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D      JI748_06255 D-alanyl-D-alanine carboxypeptidase	K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D      JI748_04715 ATP-dependent Clp protease proteolytic subunit	K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D      JI748_07865 ATP-dependent Clp protease proteolytic subunit	K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D      JI748_07835 lon; endopeptidase La	K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D      JI748_06150 lexA; transcriptional repressor LexA	K01356 lexA; repressor LexA [EC:3.4.21.88]
D      JI748_08140 lepB; signal peptidase I	K03100 lepB; signal peptidase I [EC:3.4.21.89]
D      JI748_16195 S41 family peptidase	K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D      JI748_16950 rhomboid family intramembrane serine protease	K07059 K07059; rhomboid family protein
D      JI748_09060 HK97 family phage prohead protease	K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D      JI748_15400 hslV; ATP-dependent protease subunit HslV	K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D      JI748_11200 gamma-glutamyltransferase	K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D      JI748_04145 protease modulator HflC	K04087 hflC; modulator of FtsH protease HflC
D      JI748_04140 hflK; FtsH protease activity modulator HflK	K04088 hflK; modulator of FtsH protease HflK
C    01003 Glycosyltransferases [BR:drh01003]
D      JI748_00690 glycosyltransferase family 2 protein	K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D      JI748_03685 glgA; glycogen synthase GlgA	K00703 glgA; starch synthase [EC:2.4.1.21]
D      JI748_12755 bcsA; UDP-forming cellulose synthase catalytic subunit	K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D      JI748_16825 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase	K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D      JI748_05945 penicillin-binding protein 1A	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_09125 PBP1A family penicillin-binding protein	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_14260 PBP1A family penicillin-binding protein	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_05225 pelF; GT4 family glycosyltransferase PelF	K21011 pelF; polysaccharide biosynthesis protein PelF
D      JI748_15940 mdoH; glucans biosynthesis glucosyltransferase MdoH	K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D      JI748_07830 glycosyltransferase family 1 protein	K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173]
D      JI748_12770 hypothetical protein	K14596 crtX; zeaxanthin glucosyltransferase [EC:2.4.1.276]
D      JI748_02100 trehalose-6-phosphate synthase	K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C    01005 Lipopolysaccharide biosynthesis proteins [BR:drh01005]
D      JI748_05825 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D      JI748_05830 lipid-A-disaccharide synthase	K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D      JI748_04030 UDP-3-O-acyl-N-acetylglucosamine deacetylase	K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D      JI748_05815 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D      JI748_16030 acyloxyacyl hydrolase	K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D      JI748_14315 O-antigen ligase family protein	K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C    01011 Peptidoglycan biosynthesis and degradation proteins [BR:drh01011]
D      JI748_11940 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase	K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D      JI748_06095 murB; UDP-N-acetylmuramate dehydrogenase	K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D      JI748_04000 UDP-N-acetylmuramate--L-alanine ligase	K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D      JI748_03960 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D      JI748_04005 D-alanine--D-alanine ligase	K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D      JI748_08440 alr; alanine racemase	K01775 alr; alanine racemase [EC:5.1.1.1]
D      JI748_03970 phospho-N-acetylmuramoyl-pentapeptide-transferase	K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D      JI748_03995 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D      JI748_14095 undecaprenyl-diphosphate phosphatase	K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D      JI748_12285 phosphatase PAP2 family protein	K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D      JI748_14765 murJ; murein biosynthesis integral membrane protein MurJ	K03980 murJ; putative peptidoglycan lipid II flippase
D      JI748_05945 penicillin-binding protein 1A	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_09125 PBP1A family penicillin-binding protein	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_14260 PBP1A family penicillin-binding protein	K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D      JI748_03390 penicillin-binding protein 2	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D      JI748_03955 penicillin-binding protein 2	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D      JI748_06255 D-alanyl-D-alanine carboxypeptidase	K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D      JI748_16825 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase	K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D      JI748_00705 L,D-transpeptidase family protein	K21470 ycbB; L,D-transpeptidase YcbB
D      JI748_03510 L,D-transpeptidase family protein	K21470 ycbB; L,D-transpeptidase YcbB
D      JI748_08080 L,D-transpeptidase family protein	K21470 ycbB; L,D-transpeptidase YcbB
D      JI748_00015 lytic murein transglycosylase	K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D      JI748_08385 mltG; endolytic transglycosylase MltG	K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D      JI748_06250 septal ring lytic transglycosylase RlpA family protein	K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D      JI748_13875 septal ring lytic transglycosylase RlpA family protein	K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D      JI748_05940 N-acetylmuramoyl-L-alanine amidase	K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C    01004 Lipid biosynthesis proteins [BR:drh01004]
D      JI748_08405 fabD; ACP S-malonyltransferase	K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D      JI748_08025 ketoacyl-ACP synthase III	K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D      JI748_14175 fabB; beta-ketoacyl-ACP synthase I	K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D      JI748_08390 fabF; beta-ketoacyl-ACP synthase II	K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D      JI748_08400 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      JI748_09620 SDR family oxidoreductase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      JI748_14170 fabA; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D      JI748_05820 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ	K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D      JI748_09870 SDR family oxidoreductase	K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D      JI748_11350 arylesterase	K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D      JI748_02630 yciA; acyl-CoA thioester hydrolase YciA	K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D      JI748_04320 acs; acetate--CoA ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      JI748_00585 long-chain fatty acid--CoA ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      JI748_08030 plsX; phosphate acyltransferase PlsX	K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D      JI748_06085 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY	K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D      JI748_16900 1-acyl-sn-glycerol-3-phosphate acyltransferase	K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C    01008 Polyketide biosynthesis proteins
C    01006 Prenyltransferases [BR:drh01006]
D      JI748_12810 polyprenyl synthetase family protein	K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D      JI748_16820 polyprenyl synthetase family protein	K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D      JI748_09990 polyprenyl synthetase family protein	K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D      JI748_05795 isoprenyl transferase	K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D      JI748_07420 squalene/phytoene synthase family protein	K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D      JI748_12785 phytoene/squalene synthase family protein	K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D      JI748_04155 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D      JI748_10270 4-hydroxybenzoate octaprenyltransferase	K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D      JI748_10205 protoheme IX farnesyltransferase	K02257 COX10; heme o synthase [EC:2.5.1.141]
C    01007 Amino acid related enzymes [BR:drh01007]
D      JI748_12615 lysine--tRNA ligase	K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D      JI748_05840 glutamate--tRNA ligase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      JI748_08755 glutamate--tRNA ligase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      JI748_16975 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS	K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D      JI748_07320 tyrosine--tRNA ligase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      JI748_14760 trpS; tryptophan--tRNA ligase	K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D      JI748_08740 cysteine--tRNA ligase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      JI748_07490 arginine--tRNA ligase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      JI748_06270 methionine--tRNA ligase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D      JI748_10555 isoleucine--tRNA ligase	K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D      JI748_07525 valine--tRNA ligase	K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D      JI748_15500 leucine--tRNA ligase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      JI748_06410 aspS; aspartate--tRNA ligase	K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D      JI748_10640 histidine--tRNA ligase	K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D      JI748_09975 glycine--tRNA ligase subunit alpha	K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D      JI748_09960 glycine--tRNA ligase subunit beta	K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D      JI748_07455 serS; serine--tRNA ligase	K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D      JI748_06830 proline--tRNA ligase	K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D      JI748_05020 thrS; threonine--tRNA ligase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      JI748_04615 alaS; alanine--tRNA ligase	K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D      JI748_14580 pheS; phenylalanine--tRNA ligase subunit alpha	K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D      JI748_14565 phenylalanine--tRNA ligase subunit beta	K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D      JI748_05215 endo alpha-1,4 polygalactosaminidase	K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16]
D      JI748_02575 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_07180 pyridoxal phosphate-dependent aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_10715 aspartate/tyrosine/aromatic aminotransferase	K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D      JI748_07825 LL-diaminopimelate aminotransferase	K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D      JI748_04270 pyridoxal phosphate-dependent aminotransferase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      JI748_16875 histidinol-phosphate transaminase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      JI748_12245 hemA; 5-aminolevulinate synthase	K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D      JI748_13665 aspartate aminotransferase family protein	K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D      JI748_13025 aspartate aminotransferase family protein	K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D      JI748_02420 branched-chain amino acid aminotransferase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      JI748_15270 pabB; aminodeoxychorismate synthase component I	K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D      JI748_11695 aminotransferase class V-fold PLP-dependent enzyme	K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D      JI748_00895 phosphoserine transaminase	K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C    00199 Cytochrome P450
C    00194 Photosynthesis proteins [BR:drh00194]
D      JI748_16170 F0F1 ATP synthase subunit epsilon	K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D      JI748_16165 atpD; F0F1 ATP synthase subunit beta	K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D      JI748_16160 F0F1 ATP synthase subunit gamma	K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D      JI748_16155 F0F1 ATP synthase subunit alpha	K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D      JI748_16150 F0F1 ATP synthase subunit delta	K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D      JI748_10115 ATP F0F1 synthase subunit B	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      JI748_10120 ATP F0F1 synthase subunit B	K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D      JI748_10110 F0F1 ATP synthase subunit C	K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D      JI748_10105 F0F1 ATP synthase subunit A	K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D      JI748_10100 AtpZ/AtpI family protein	K02116 atpI; ATP synthase protein I
B
B  09182 Protein families: genetic information processing
C    03000 Transcription factors [BR:drh03000]
D      JI748_07970 helix-turn-helix domain-containing protein	K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D      JI748_13420 AraC family transcriptional regulator	K13652 K13652; AraC family transcriptional regulator
D      JI748_15345 bifunctional helix-turn-helix domain-containing protein/methylated-DNA--[protein]-cysteine S-methyltransferase	K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D      JI748_09325 LysR family transcriptional regulator	K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D      JI748_03175 pcaQ; pca operon transcription factor PcaQ	K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D      JI748_03865 hydrogen peroxide-inducible genes activator	K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D      JI748_09755 DeoR/GlpR transcriptional regulator	K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D      JI748_11815 DeoR/GlpR transcriptional regulator	K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D      JI748_10935 LacI family DNA-binding transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D      JI748_02005 substrate-binding domain-containing protein	K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D      JI748_11055 LacI family DNA-binding transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D      JI748_13550 substrate-binding domain-containing protein	K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D      JI748_14800 LacI family DNA-binding transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D      JI748_16345 LacI family DNA-binding transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D      JI748_07695 LacI family DNA-binding transcriptional regulator	K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D      JI748_09405 LacI family DNA-binding transcriptional regulator	K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D      JI748_13975 phnF; phosphonate metabolism transcriptional regulator PhnF	K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D      JI748_08210 GntR family transcriptional regulator	K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D      JI748_10965 FadR family transcriptional regulator	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D      JI748_12075 FadR family transcriptional regulator	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D      JI748_13410 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D      JI748_13660 TetR/AcrR family transcriptional regulator	K09017 rutR; TetR/AcrR family transcriptional regulator
D      JI748_06140 TetR/AcrR family transcriptional regulator	K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D      JI748_06940 Lrp/AsnC ligand binding domain-containing protein	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D      JI748_08820 Lrp/AsnC family transcriptional regulator	K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D      JI748_02815 MarR family transcriptional regulator	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D      JI748_03475 cueR; Cu(I)-responsive transcriptional regulator	K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D      JI748_09380 cueR; Cu(I)-responsive transcriptional regulator	K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D      JI748_14495 transcriptional repressor	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D      JI748_10525 transcriptional repressor	K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D      JI748_14165 transcriptional repressor	K09826 irr; Fur family transcriptional regulator, iron response regulator
D      JI748_02995 helix-turn-helix domain-containing protein	K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D      JI748_11770 helix-turn-helix domain-containing protein	K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
D      JI748_12065 IclR family transcriptional regulator	K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D      JI748_09370 Crp/Fnr family transcriptional regulator	K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D      JI748_15110 Rrf2 family transcriptional regulator	K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D      JI748_13540 rirA; iron-responsive transcriptional regulator RirA	K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
D      JI748_03555 metalloregulator ArsR/SmtB family transcription factor	K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D      JI748_06630 DUF2083 domain-containing protein	K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D      JI748_06850 biotin--[acetyl-CoA-carboxylase] ligase	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D      JI748_00305 LysR family transcriptional regulator	K02019 modE; molybdate transport system regulatory protein
D      JI748_06935 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D      JI748_03085 4Fe-4S binding protein	K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D      JI748_17105 BolA family transcriptional regulator	K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D      JI748_14940 ParB/RepB/Spo0J family partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D      JI748_15490 ParB/RepB/Spo0J family partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D      JI748_17160 CarD family transcriptional regulator	K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D      JI748_15255 hrcA; heat-inducible transcriptional repressor HrcA	K03705 hrcA; heat-inducible transcriptional repressor
D      JI748_10940 rnk; nucleoside diphosphate kinase regulator	K06140 rnk; regulator of nucleoside diphosphate kinase
D      JI748_10945 GreA/GreB family elongation factor	K06140 rnk; regulator of nucleoside diphosphate kinase
D      JI748_10160 YqgE/AlgH family protein	K07735 algH; putative transcriptional regulator
D      JI748_04485 dksA; RNA polymerase-binding protein DksA	K06204 dksA; RNA polymerase-binding transcription factor
D      JI748_08060 nrdR; transcriptional repressor NrdR	K07738 nrdR; transcriptional repressor NrdR
D      JI748_07510 sel1 repeat family protein	K25885 exoR; exopolysaccharide production negative regulator
C    03021 Transcription machinery [BR:drh03021]
D      JI748_05560 DNA-directed RNA polymerase subunit alpha	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D      JI748_05390 rpoB; DNA-directed RNA polymerase subunit beta	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D      JI748_05395 rpoC; DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D      JI748_08160 DNA-directed RNA polymerase subunit omega	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D      JI748_02875 rpoD; RNA polymerase sigma factor RpoD	K03086 rpoD; RNA polymerase primary sigma factor
D      JI748_00330 sigma-70 family RNA polymerase sigma factor	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D      JI748_01095 RNA polymerase sigma factor	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D      JI748_01300 sigma-70 family RNA polymerase sigma factor	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D      JI748_01895 RNA polymerase sigma factor	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D      JI748_03980 sigma-70 family RNA polymerase sigma factor	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D      JI748_13605 sigma-70 family RNA polymerase sigma factor	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D      JI748_00950 rpoH; RNA polymerase sigma factor RpoH	K03089 rpoH; RNA polymerase sigma-32 factor
D      JI748_14545 rpoN; RNA polymerase factor sigma-54	K03092 rpoN; RNA polymerase sigma-54 factor
D      JI748_14625 nusA; transcription termination/antitermination protein NusA	K02600 nusA; transcription termination/antitermination protein NusA
D      JI748_08055 nusB; transcription antitermination factor NusB	K03625 nusB; transcription antitermination protein NusB
D      JI748_05365 nusG; transcription termination/antitermination protein NusG	K02601 nusG; transcription termination/antitermination protein NusG
D      JI748_04485 dksA; RNA polymerase-binding protein DksA	K06204 dksA; RNA polymerase-binding transcription factor
D      JI748_02700 greA; transcription elongation factor GreA	K03624 greA; transcription elongation factor GreA
D      JI748_15465 rho; transcription termination factor Rho	K03628 rho; transcription termination factor Rho
C    03019 Messenger RNA biogenesis [BR:drh03019]
D      JI748_05935 ribonuclease E/G	K08300 rne; ribonuclease E [EC:3.1.26.12]
D      JI748_08135 rnc; ribonuclease III	K03685 rnc; ribonuclease III [EC:3.1.26.3]
D      JI748_06845 ribonuclease J	K12574 rnj; ribonuclease J [EC:3.1.-.-]
D      JI748_06080 rnr; ribonuclease R	K12573 rnr; ribonuclease R [EC:3.1.13.1]
D      JI748_02085 DEAD/DEAH box helicase	K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D      JI748_08310 DEAD/DEAH box helicase	K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D      JI748_10295 recQ; DNA helicase RecQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D      JI748_06215 eno; phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      JI748_14670 pnp; polyribonucleotide nucleotidyltransferase	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D      JI748_15465 rho; transcription termination factor Rho	K03628 rho; transcription termination factor Rho
D      JI748_15280 dnaK; molecular chaperone DnaK	K04043 dnaK; molecular chaperone DnaK
D      JI748_10605 groL; chaperonin GroEL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D      JI748_06295 hfq; RNA chaperone Hfq	K03666 hfq; host factor-I protein
D      JI748_06425 RNA degradosome polyphosphate kinase	K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D      JI748_13040 ppk2; polyphosphate kinase 2	K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D      JI748_02270 CCA tRNA nucleotidyltransferase	K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D      JI748_16185 RNA pyrophosphohydrolase	K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D      JI748_00500 hrpB; ATP-dependent helicase HrpB	K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C    03041 Spliceosome
C    03011 Ribosome [BR:drh03011]
D      JI748_14440 rpsA; 30S ribosomal protein S1	K02945 RP-S1; small subunit ribosomal protein S1
D      JI748_05775 rpsB; 30S ribosomal protein S2	K02967 RP-S2; small subunit ribosomal protein S2
D      JI748_05470 rpsC; 30S ribosomal protein S3	K02982 RP-S3; small subunit ribosomal protein S3
D      JI748_04665 rpsD; 30S ribosomal protein S4	K02986 RP-S4; small subunit ribosomal protein S4
D      JI748_05525 rpsE; 30S ribosomal protein S5	K02988 RP-S5; small subunit ribosomal protein S5
D      JI748_08415 rpsF; 30S ribosomal protein S6	K02990 RP-S6; small subunit ribosomal protein S6
D      JI748_05420 rpsG; 30S ribosomal protein S7	K02992 RP-S7; small subunit ribosomal protein S7
D      JI748_05510 rpsH; 30S ribosomal protein S8	K02994 RP-S8; small subunit ribosomal protein S8
D      JI748_07905 rpsI; 30S ribosomal protein S9	K02996 RP-S9; small subunit ribosomal protein S9
D      JI748_05435 rpsJ; 30S ribosomal protein S10	K02946 RP-S10; small subunit ribosomal protein S10
D      JI748_05555 rpsK; 30S ribosomal protein S11	K02948 RP-S11; small subunit ribosomal protein S11
D      JI748_05415 30S ribosomal protein S12	K02950 RP-S12; small subunit ribosomal protein S12
D      JI748_05550 rpsM; 30S ribosomal protein S13	K02952 RP-S13; small subunit ribosomal protein S13
D      JI748_05505 rpsN; 30S ribosomal protein S14	K02954 RP-S14; small subunit ribosomal protein S14
D      JI748_14675 rpsO; 30S ribosomal protein S15	K02956 RP-S15; small subunit ribosomal protein S15
D      JI748_15875 rpsP; 30S ribosomal protein S16	K02959 RP-S16; small subunit ribosomal protein S16
D      JI748_05485 rpsQ; 30S ribosomal protein S17	K02961 RP-S17; small subunit ribosomal protein S17
D      JI748_08420 30S ribosomal protein S18	K02963 RP-S18; small subunit ribosomal protein S18
D      JI748_05460 rpsS; 30S ribosomal protein S19	K02965 RP-S19; small subunit ribosomal protein S19
D      JI748_14220 rpsT; 30S ribosomal protein S20	K02968 RP-S20; small subunit ribosomal protein S20
D      JI748_00745 30S ribosomal protein S21	K02970 RP-S21; small subunit ribosomal protein S21
D      JI748_05375 rplA; 50S ribosomal protein L1	K02863 RP-L1; large subunit ribosomal protein L1
D      JI748_05455 rplB; 50S ribosomal protein L2	K02886 RP-L2; large subunit ribosomal protein L2
D      JI748_05440 rplC; 50S ribosomal protein L3	K02906 RP-L3; large subunit ribosomal protein L3
D      JI748_05445 rplD; 50S ribosomal protein L4	K02926 RP-L4; large subunit ribosomal protein L4
D      JI748_05500 rplE; 50S ribosomal protein L5	K02931 RP-L5; large subunit ribosomal protein L5
D      JI748_05515 rplF; 50S ribosomal protein L6	K02933 RP-L6; large subunit ribosomal protein L6
D      JI748_08425 rplI; 50S ribosomal protein L9	K02939 RP-L9; large subunit ribosomal protein L9
D      JI748_05380 rplJ; 50S ribosomal protein L10	K02864 RP-L10; large subunit ribosomal protein L10
D      JI748_05370 rplK; 50S ribosomal protein L11	K02867 RP-L11; large subunit ribosomal protein L11
D      JI748_05385 rplL; 50S ribosomal protein L7/L12	K02935 RP-L7; large subunit ribosomal protein L7/L12
D      JI748_07910 rplM; 50S ribosomal protein L13	K02871 RP-L13; large subunit ribosomal protein L13
D      JI748_05490 rplN; 50S ribosomal protein L14	K02874 RP-L14; large subunit ribosomal protein L14
D      JI748_05535 50S ribosomal protein L15	K02876 RP-L15; large subunit ribosomal protein L15
D      JI748_05475 rplP; 50S ribosomal protein L16	K02878 RP-L16; large subunit ribosomal protein L16
D      JI748_05565 rplQ; 50S ribosomal protein L17	K02879 RP-L17; large subunit ribosomal protein L17
D      JI748_05520 rplR; 50S ribosomal protein L18	K02881 RP-L18; large subunit ribosomal protein L18
D      JI748_15525 rplS; 50S ribosomal protein L19	K02884 RP-L19; large subunit ribosomal protein L19
D      JI748_14585 rplT; 50S ribosomal protein L20	K02887 RP-L20; large subunit ribosomal protein L20
D      JI748_16255 rplU; 50S ribosomal protein L21	K02888 RP-L21; large subunit ribosomal protein L21
D      JI748_05465 rplV; 50S ribosomal protein L22	K02890 RP-L22; large subunit ribosomal protein L22
D      JI748_05450 50S ribosomal protein L23	K02892 RP-L23; large subunit ribosomal protein L23
D      JI748_05495 rplX; 50S ribosomal protein L24	K02895 RP-L24; large subunit ribosomal protein L24
D      JI748_16250 rpmA; 50S ribosomal protein L27	K02899 RP-L27; large subunit ribosomal protein L27
D      JI748_17135 rpmB; 50S ribosomal protein L28	K02902 RP-L28; large subunit ribosomal protein L28
D      JI748_05480 rpmC; 50S ribosomal protein L29	K02904 RP-L29; large subunit ribosomal protein L29
D      JI748_05530 rpmD; 50S ribosomal protein L30	K02907 RP-L30; large subunit ribosomal protein L30
D      JI748_00840 rpmE; 50S ribosomal protein L31	K02909 RP-L31; large subunit ribosomal protein L31
D      JI748_16840 50S ribosomal protein L32	K02911 RP-L32; large subunit ribosomal protein L32
D      JI748_06065 rpmG; 50S ribosomal protein L33	K02913 RP-L33; large subunit ribosomal protein L33
D      JI748_01530 rpmH; 50S ribosomal protein L34	K02914 RP-L34; large subunit ribosomal protein L34
D      JI748_14590 rpmI; 50S ribosomal protein L35	K02916 RP-L35; large subunit ribosomal protein L35
D      JI748_00645 ykgO; type B 50S ribosomal protein L36	K02919 RP-L36; large subunit ribosomal protein L36
D      JI748_02365 50S ribosomal protein L25/general stress protein Ctc	K02897 RP-L25; large subunit ribosomal protein L25
D      JI748_17320 rrf; 5S ribosomal RNA	K01985 5SrRNA; 5S ribosomal RNA
D      JI748_17300 16S ribosomal RNA	K01977 16SrRNA; 16S ribosomal RNA
D      JI748_17315 23S ribosomal RNA	K01980 23SrRNA; 23S ribosomal RNA
C    03009 Ribosome biogenesis [BR:drh03009]
D      JI748_08135 rnc; ribonuclease III	K03685 rnc; ribonuclease III [EC:3.1.26.3]
D      JI748_08130 era; GTPase Era	K03595 era; GTPase
D      JI748_16230 obgE; GTPase ObgE	K03979 obgE; GTPase [EC:3.6.5.-]
D      JI748_04485 dksA; RNA polymerase-binding protein DksA	K06204 dksA; RNA polymerase-binding transcription factor
D      JI748_14625 nusA; transcription termination/antitermination protein NusA	K02600 nusA; transcription termination/antitermination protein NusA
D      JI748_08055 nusB; transcription antitermination factor NusB	K03625 nusB; transcription antitermination protein NusB
D      JI748_05365 nusG; transcription termination/antitermination protein NusG	K02601 nusG; transcription termination/antitermination protein NusG
D      JI748_08370 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D      JI748_08520 RsmB/NOP family class I SAM-dependent RNA methyltransferase	K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D      JI748_15575 RsmB/NOP family class I SAM-dependent RNA methyltransferase	K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D      JI748_10535 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D      JI748_10275 16S rRNA (uracil(1498)-N(3))-methyltransferase	K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D      JI748_15480 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D      JI748_03945 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D      JI748_15235 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase	K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D      JI748_10815 TlyA family RNA methyltransferase	K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D      JI748_05310 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D      JI748_08550 RlmE family RNA methyltransferase	K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D      JI748_16205 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D      JI748_15675 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D      JI748_15665 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D      JI748_14745 class I SAM-dependent RNA methyltransferase	K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D      JI748_07820 rlmC; 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D      JI748_04890 RluA family pseudouridine synthase	K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D      JI748_10540 pseudouridine synthase	K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D      JI748_05595 RluA family pseudouridine synthase	K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D      JI748_00955 RluA family pseudouridine synthase	K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D      JI748_06535 pseudouridine synthase	K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D      JI748_06475 GNAT family N-acetyltransferase	K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D      JI748_14500 rimI; ribosomal protein S18-alanine N-acetyltransferase	K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D      JI748_10170 GNAT family N-acetyltransferase	K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D      JI748_15535 rimM; ribosome maturation factor RimM	K02860 rimM; 16S rRNA processing protein RimM
D      JI748_05650 rimO; 30S ribosomal protein S12 methylthiotransferase RimO	K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D      JI748_04065 50S ribosomal protein L11 methyltransferase	K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D      JI748_05935 ribonuclease E/G	K08300 rne; ribonuclease E [EC:3.1.26.12]
D      JI748_06520 ruvX; Holliday junction resolvase RuvX	K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D      JI748_08310 DEAD/DEAH box helicase	K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D      JI748_08485 der; ribosome biogenesis GTPase Der	K03977 engA; GTPase
D      JI748_06290 hflX; GTPase HflX	K03665 hflX; GTPase
D      JI748_10795 threonylcarbamoyl-AMP synthase	K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D      JI748_08155 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D      JI748_13905 rbfA; 30S ribosome-binding factor RbfA	K02834 rbfA; ribosome-binding factor A
D      JI748_14620 rimP; ribosome maturation factor RimP	K09748 rimP; ribosome maturation factor RimP
D      JI748_16210 rsfS; ribosome silencing factor	K09710 ybeB; ribosome-associated protein
D      JI748_14370 ybeY; rRNA maturation RNase YbeY	K07042 ybeY; probable rRNA maturation factor
D      JI748_14550 raiA; ribosome-associated translation inhibitor RaiA	K05808 hpf; ribosome hibernation promoting factor
D      JI748_02350 ychF; redox-regulated ATPase YchF	K06942 ychF; ribosome-binding ATPase
C    03016 Transfer RNA biogenesis [BR:drh03016]
D      JI748_05840 glutamate--tRNA ligase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      JI748_08755 glutamate--tRNA ligase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      JI748_06830 proline--tRNA ligase	K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D      JI748_10555 isoleucine--tRNA ligase	K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D      JI748_15500 leucine--tRNA ligase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      JI748_06270 methionine--tRNA ligase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D      JI748_07490 arginine--tRNA ligase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      JI748_06410 aspS; aspartate--tRNA ligase	K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D      JI748_04615 alaS; alanine--tRNA ligase	K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D      JI748_05020 thrS; threonine--tRNA ligase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      JI748_07455 serS; serine--tRNA ligase	K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D      JI748_08740 cysteine--tRNA ligase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      JI748_07525 valine--tRNA ligase	K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D      JI748_10640 histidine--tRNA ligase	K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D      JI748_14580 pheS; phenylalanine--tRNA ligase subunit alpha	K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D      JI748_14565 phenylalanine--tRNA ligase subunit beta	K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D      JI748_07320 tyrosine--tRNA ligase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      JI748_14760 trpS; tryptophan--tRNA ligase	K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D      JI748_07600 alanyl-tRNA editing protein	K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
D      JI748_06030 HIT family protein	K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D      JI748_14610 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB	K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D      JI748_12350 truA; tRNA pseudouridine(38-40) synthase TruA	K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D      JI748_13900 truB; tRNA pseudouridine(55) synthase TruB	K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D      JI748_07310 aminotransferase class V-fold PLP-dependent enzyme	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      JI748_10795 threonylcarbamoyl-AMP synthase	K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D      JI748_04155 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D      JI748_15470 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D      JI748_15475 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D      JI748_08670 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ	K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D      JI748_01535 rnpA; ribonuclease P protein component	K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D      JI748_03910 rnpB; RNase P RNA component class A	K01978 rnpB; M1 RNA
D      JI748_15250 rph; ribonuclease PH	K00989 rph; ribonuclease PH [EC:2.7.7.56]
D      JI748_06415 rnd; ribonuclease D	K03684 rnd; ribonuclease D [EC:3.1.13.5]
D      JI748_14525 ribonuclease D	K03684 rnd; ribonuclease D [EC:3.1.13.5]
D      JI748_15645 thpR; RNA 2',3'-cyclic phosphodiesterase	K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D      JI748_03830 ettA; energy-dependent translational throttle protein EttA	K06020 ettA; energy-dependent translational throttle protein EttA
D      JI748_12615 lysine--tRNA ligase	K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D      JI748_09975 glycine--tRNA ligase subunit alpha	K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D      JI748_09960 glycine--tRNA ligase subunit beta	K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D      JI748_05215 endo alpha-1,4 polygalactosaminidase	K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16]
D      JI748_16975 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS	K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D      JI748_09335 ybaK; Cys-tRNA(Pro) deacylase	K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D      JI748_10385 nucleoside deaminase	K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D      JI748_08850 dusA; tRNA dihydrouridine(20/20a) synthase DusA	K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D      JI748_06325 dusB; tRNA dihydrouridine synthase DusB	K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D      JI748_14690 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D      JI748_15840 mtaB; tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB	K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D      JI748_01965 class I SAM-dependent methyltransferase	K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D      JI748_09485 TIGR04290 family methyltransferase	K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D      JI748_04655 RNA methyltransferase	K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D      JI748_07415 trmFO; methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D      JI748_15530 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD	K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D      JI748_02285 tRNA (cytidine(34)-2'-O)-methyltransferase	K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D      JI748_04890 RluA family pseudouridine synthase	K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D      JI748_01085 mnmA; tRNA 2-thiouridine(34) synthase MnmA	K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D      JI748_04690 ttcA; tRNA 2-thiocytidine(32) synthetase TtcA	K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D      JI748_07385 sulfurtransferase TusA family protein	K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D      JI748_07280 iron-sulfur cluster assembly accessory protein	K13628 iscA; iron-sulfur cluster assembly protein
D      JI748_09915 folate-binding protein YgfZ	K06980 ygfZ; tRNA-modifying protein YgfZ
D      JI748_06790 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D      JI748_14105 queG; tRNA epoxyqueuosine(34) reductase QueG	K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D      JI748_06775 tgt; tRNA guanosine(34) transglycosylase Tgt	K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D      JI748_01310 tilS; tRNA lysidine(34) synthetase TilS	K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D      JI748_14505 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D      JI748_15810 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D      JI748_13335 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D      JI748_06080 rnr; ribonuclease R	K12573 rnr; ribonuclease R [EC:3.1.13.1]
D      JI748_14670 pnp; polyribonucleotide nucleotidyltransferase	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D      JI748_08500 type II toxin-antitoxin system VapC family toxin	K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C    03012 Translation factors [BR:drh03012]
D      JI748_14635 infB; translation initiation factor IF-2	K02519 infB; translation initiation factor IF-2
D      JI748_14125 translation initiation factor IF-3	K02520 infC; translation initiation factor IF-3
D      JI748_08325 ABC-F family ATP-binding cassette domain-containing protein	K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D      JI748_05780 elongation factor Ts	K02357 tsf; elongation factor Ts
D      JI748_05430 tuf; elongation factor Tu	K02358 tuf; elongation factor Tu
D      JI748_05425 fusA; elongation factor G	K02355 fusA; elongation factor G
D      JI748_17260 prfA; peptide chain release factor 1	K02835 prfA; peptide chain release factor 1
D      JI748_05790 frr; ribosome recycling factor	K02838 frr; ribosome recycling factor
D      JI748_17265 peptide chain release factor N(5)-glutamine methyltransferase	K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D      JI748_02360 aminoacyl-tRNA hydrolase	K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D      JI748_11915 infA; translation initiation factor IF-1	K02518 infA; translation initiation factor IF-1
D      JI748_01670 efp; elongation factor P	K02356 efp; elongation factor P
D      JI748_01675 genX; EF-P lysine aminoacylase GenX	K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D      JI748_07340 prfB; peptide chain release factor 2	K02836 prfB; peptide chain release factor 2
D      JI748_04355 peptide chain release factor 3	K02837 prfC; peptide chain release factor 3
D      JI748_05030 arfB; aminoacyl-tRNA hydrolase	K15034 yaeJ; ribosome-associated protein
C    03110 Chaperones and folding catalysts [BR:drh03110]
D      JI748_06005 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA	K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D      JI748_17275 clpB; ATP-dependent chaperone ClpB	K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D      JI748_07860 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX	K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D      JI748_15405 hslU; ATP-dependent protease ATPase subunit HslU	K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D      JI748_15280 dnaK; molecular chaperone DnaK	K04043 dnaK; molecular chaperone DnaK
D      JI748_09110 Hsp70 family protein	K04046 yegD; hypothetical chaperone protein
D      JI748_10605 groL; chaperonin GroEL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D      JI748_15295 dnaJ; molecular chaperone DnaJ	K03686 dnaJ; molecular chaperone DnaJ
D      JI748_03905 DnaJ family molecular chaperone	K05801 djlA; DnaJ like chaperone protein
D      JI748_13015 Hsp33 family molecular chaperone	K04083 hslO; molecular chaperone Hsp33
D      JI748_15260 grpE; nucleotide exchange factor GrpE	K03687 GRPE; molecular chaperone GrpE
D      JI748_00435 Hsp20 family protein	K04080 ibpA; molecular chaperone IbpA
D      JI748_17150 RNA-binding S4 domain-containing protein	K04762 hslR; ribosome-associated heat shock protein Hsp15
D      JI748_10600 co-chaperone GroES	K04078 groES; chaperonin GroES
D      JI748_08925 Do family serine endopeptidase	K04771 degP; serine protease Do [EC:3.4.21.107]
D      JI748_00945 ftsH; ATP-dependent zinc metalloprotease FtsH	K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D      JI748_10105 F0F1 ATP synthase subunit A	K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D      JI748_15430 secB; protein-export chaperone SecB	K03071 secB; preprotein translocase subunit SecB
D      JI748_03300 copper chaperone PCu(A)C	K09796 pccA; periplasmic copper chaperone A
D      JI748_13785 copper chaperone PCu(A)C	K09796 pccA; periplasmic copper chaperone A
D      JI748_13080 beta-N-acetylhexosaminidase	K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D      JI748_06185 peptidylprolyl isomerase	K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D      JI748_17055 peptidylprolyl isomerase	K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D      JI748_08360 SurA N-terminal domain-containing protein	K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D      JI748_14380 trxA; thioredoxin	K03671 TXN; thioredoxin
D      JI748_14055 co-chaperone YbbN	K05838 ybbN; putative thioredoxin
D      JI748_17185 grxC; glutaredoxin 3	K03676 grxC; glutaredoxin 3
D      JI748_04735 grxD; Grx4 family monothiol glutaredoxin	K07390 grxD; monothiol glutaredoxin
D      JI748_15595 DsbE family thiol:disulfide interchange protein	K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C    04131 Membrane trafficking [BR:drh04131]
D      JI748_08315 ndk; nucleoside-diphosphate kinase	K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D      JI748_01350 fructose-bisphosphate aldolase class I	K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D      JI748_01390 gap; type I glyceraldehyde-3-phosphate dehydrogenase	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      JI748_15350 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D      JI748_00665 pyk; pyruvate kinase	K00873 PK; pyruvate kinase [EC:2.7.1.40]
C    04121 Ubiquitin system
C    03051 Proteasome
C    03032 DNA replication proteins [BR:drh03032]
D      JI748_09950 rnhA; ribonuclease HI	K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D      JI748_07195 HU family DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta
D      JI748_08020 integration host factor subunit alpha	K04764 ihfA; integration host factor subunit alpha
D      JI748_13535 HU family DNA-binding protein	K04764 ihfA; integration host factor subunit alpha
D      JI748_14430 integration host factor subunit beta	K05788 ihfB; integration host factor subunit beta
D      JI748_14225 dnaA; chromosomal replication initiator protein DnaA	K02313 dnaA; chromosomal replication initiator protein
D      JI748_08435 replicative DNA helicase	K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D      JI748_02870 DNA primase	K02316 dnaG; DNA primase [EC:2.7.7.101]
D      JI748_05710 ssb; single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein
D      JI748_05770 dnaE; DNA polymerase III subunit alpha	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      JI748_14235 DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D      JI748_08345 DNA polymerase III subunit chi	K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D      JI748_15495 holA; DNA polymerase III subunit delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D      JI748_06265 AAA family ATPase	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D      JI748_15435 dnaQ; DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D      JI748_12310 DNA polymerase III subunit gamma/tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D      JI748_10065 ribonuclease HII	K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D      JI748_13305 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      JI748_04045 ligA; NAD-dependent DNA ligase LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D      JI748_05760 gyrA; DNA gyrase subunit A	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D      JI748_14245 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D      JI748_08120 parC; DNA topoisomerase IV subunit A	K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D      JI748_07255 parE; DNA topoisomerase IV subunit B	K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D      JI748_06100 topA; type I DNA topoisomerase	K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D      JI748_09840 DNA topoisomerase IB	K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C    03036 Chromosome and associated proteins [BR:drh03036]
D      JI748_08135 rnc; ribonuclease III	K03685 rnc; ribonuclease III [EC:3.1.26.3]
D      JI748_01350 fructose-bisphosphate aldolase class I	K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D      JI748_07195 HU family DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta
D      JI748_08020 integration host factor subunit alpha	K04764 ihfA; integration host factor subunit alpha
D      JI748_13535 HU family DNA-binding protein	K04764 ihfA; integration host factor subunit alpha
D      JI748_14430 integration host factor subunit beta	K05788 ihfB; integration host factor subunit beta
D      JI748_14225 dnaA; chromosomal replication initiator protein DnaA	K02313 dnaA; chromosomal replication initiator protein
D      JI748_00430 dps; DNA starvation/stationary phase protection protein Dps	K04047 dps; starvation-inducible DNA-binding protein
D      JI748_06295 hfq; RNA chaperone Hfq	K03666 hfq; host factor-I protein
D      JI748_06940 Lrp/AsnC ligand binding domain-containing protein	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D      JI748_10095 AAA family ATPase	K03529 smc; chromosome segregation protein
D      JI748_07480 segregation/condensation protein A	K05896 scpA; segregation and condensation protein A
D      JI748_07475 scpB; SMC-Scp complex subunit ScpB	K06024 scpB; segregation and condensation protein B
D      JI748_04015 ftsA; cell division protein FtsA	K03590 ftsA; cell division protein FtsA
D      JI748_16910 ftsE; cell division ATP-binding protein FtsE	K09812 ftsE; cell division transport system ATP-binding protein
D      JI748_03390 penicillin-binding protein 2	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D      JI748_03955 penicillin-binding protein 2	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D      JI748_14085 DNA translocase FtsK 4TM domain-containing protein	K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D      JI748_03950 hypothetical protein	K03586 ftsL; cell division protein FtsL
D      JI748_04010 FtsQ-type POTRA domain-containing protein	K03589 ftsQ; cell division protein FtsQ
D      JI748_03990 cell division protein FtsW	K03588 ftsW; cell division protein FtsW
D      JI748_16905 ABC transporter permease	K09811 ftsX; cell division transport system permease protein
D      JI748_04025 ftsZ; cell division protein FtsZ	K03531 ftsZ; cell division protein FtsZ
D      JI748_01405 zapA; cell division protein ZapA	K09888 zapA; cell division protein ZapA
D      JI748_01755 AFG1 family ATPase	K06916 zapE; cell division protein ZapE
D      JI748_05940 N-acetylmuramoyl-L-alanine amidase	K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D      JI748_07400 AAA family ATPase	K03496 parA; chromosome partitioning protein
D      JI748_15485 ParA family protein	K03496 parA; chromosome partitioning protein
D      JI748_14940 ParB/RepB/Spo0J family partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D      JI748_15490 ParB/RepB/Spo0J family partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D      JI748_08120 parC; DNA topoisomerase IV subunit A	K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D      JI748_07255 parE; DNA topoisomerase IV subunit B	K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D      JI748_15475 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D      JI748_15480 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D      JI748_07415 trmFO; methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D      JI748_16130 tyrosine recombinase XerC	K03733 xerC; integrase/recombinase XerC
D      JI748_15140 tyrosine-type recombinase/integrase	K04763 xerD; integrase/recombinase XerD
D      JI748_17080 site-specific tyrosine recombinase XerD	K04763 xerD; integrase/recombinase XerD
D      JI748_10705 Mrp/NBP35 family ATP-binding protein	K03593 mrp; ATP-binding protein involved in chromosome partitioning
D      JI748_01545 YihA family ribosome biogenesis GTP-binding protein	K03978 engB; GTP-binding protein
C    03400 DNA repair and recombination proteins [BR:drh03400]
D      JI748_07585 deoxyribodipyrimidine photo-lyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D      JI748_13070 DNA-3-methyladenine glycosylase	K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D      JI748_10080 mutY; A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D      JI748_15335 nth; endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D      JI748_14820 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D      JI748_17030 mutT; 8-oxo-dGTP diphosphatase MutT	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D      JI748_14195 dut; dUTP diphosphatase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D      JI748_15345 bifunctional helix-turn-helix domain-containing protein/methylated-DNA--[protein]-cysteine S-methyltransferase	K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D      JI748_04930 cryptochrome/photolyase family protein	K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D      JI748_01160 UdgX family uracil-DNA binding protein	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D      JI748_10010 uracil-DNA glycosylase	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D      JI748_16980 DNA-3-methyladenine glycosylase 2 family protein	K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D      JI748_13240 DNA-3-methyladenine glycosylase I	K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D      JI748_14215 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D      JI748_04220 xth; exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D      JI748_07505 xth; exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D      JI748_15520 exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D      JI748_07795 recJ; single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      JI748_04045 ligA; NAD-dependent DNA ligase LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D      JI748_13305 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7]
D      JI748_05705 uvrA; excinuclease ABC subunit UvrA	K03701 uvrA; excinuclease ABC subunit A
D      JI748_02540 uvrB; excinuclease ABC subunit UvrB	K03702 uvrB; excinuclease ABC subunit B
D      JI748_02455 uvrC; excinuclease ABC subunit UvrC	K03703 uvrC; excinuclease ABC subunit C
D      JI748_04075 UvrD-helicase domain-containing protein	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      JI748_13625 ATP-dependent helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      JI748_05390 rpoB; DNA-directed RNA polymerase subunit beta	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D      JI748_05395 rpoC; DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D      JI748_05560 DNA-directed RNA polymerase subunit alpha	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D      JI748_08160 DNA-directed RNA polymerase subunit omega	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D      JI748_06720 mfd; transcription-repair coupling factor	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D      JI748_09635 DEAD/DEAH box helicase	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D      JI748_14775 mutS; DNA mismatch repair protein MutS	K03555 mutS; DNA mismatch repair protein MutS
D      JI748_10395 mutL; DNA mismatch repair endonuclease MutL	K03572 mutL; DNA mismatch repair protein MutL
D      JI748_10240 exodeoxyribonuclease VII large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D      JI748_10805 exodeoxyribonuclease VII small subunit	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D      JI748_05770 dnaE; DNA polymerase III subunit alpha	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D      JI748_14235 DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D      JI748_08345 DNA polymerase III subunit chi	K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D      JI748_15495 holA; DNA polymerase III subunit delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D      JI748_06265 AAA family ATPase	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D      JI748_15435 dnaQ; DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D      JI748_12310 DNA polymerase III subunit gamma/tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D      JI748_05710 ssb; single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein
D      JI748_04610 recA; recombinase RecA	K03553 recA; recombination protein RecA
D      JI748_01455 ruvA; Holliday junction branch migration protein RuvA	K03550 ruvA; holliday junction DNA helicase RuvA
D      JI748_01460 ruvB; Holliday junction branch migration DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D      JI748_01450 ruvC; crossover junction endodeoxyribonuclease RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D      JI748_16135 primosomal protein N'	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D      JI748_08455 radA; DNA repair protein RadA	K04485 radA; DNA repair protein RadA/Sms
D      JI748_14240 recF; DNA replication/repair protein RecF	K03629 recF; DNA replication and repair protein RecF
D      JI748_06730 recG; ATP-dependent DNA helicase RecG	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D      JI748_08125 recO; DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O)
D      JI748_12320 recR; recombination protein RecR	K06187 recR; recombination protein RecR
D      JI748_04040 recN; DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N)
D      JI748_14385 addA; double-strand break repair helicase AddA	K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D      JI748_14390 addB; double-strand break repair protein AddB	K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D      JI748_09265 DUF853 family protein	K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D      JI748_09835 Ku protein	K10979 ku; DNA end-binding protein Ku
D      JI748_09830 ligD; DNA ligase D	K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D      JI748_05760 gyrA; DNA gyrase subunit A	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D      JI748_14245 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D      JI748_06100 topA; type I DNA topoisomerase	K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D      JI748_09840 DNA topoisomerase IB	K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D      JI748_07195 HU family DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta
D      JI748_08020 integration host factor subunit alpha	K04764 ihfA; integration host factor subunit alpha
D      JI748_13535 HU family DNA-binding protein	K04764 ihfA; integration host factor subunit alpha
D      JI748_14430 integration host factor subunit beta	K05788 ihfB; integration host factor subunit beta
D      JI748_10295 recQ; DNA helicase RecQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D      JI748_06045 DNA polymerase IV	K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D      JI748_07765 dinB; DNA polymerase IV	K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D      JI748_06150 lexA; transcriptional repressor LexA	K01356 lexA; repressor LexA [EC:3.4.21.88]
D      JI748_15755 hypothetical protein	K14160 imuA; protein ImuA
D      JI748_15760 DNA polymerase Y family protein	K14161 imuB; protein ImuB
D      JI748_15765 error-prone DNA polymerase	K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D      JI748_14830 UvrD-helicase domain-containing protein	K03658 helD; DNA helicase IV [EC:5.6.2.4]
D      JI748_12575 ligase-associated DNA damage response DEXH box helicase	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D      JI748_13185 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D      JI748_13180 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C    03029 Mitochondrial biogenesis [BR:drh03029]
D      JI748_02295 cytochrome b N-terminal domain-containing protein	K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D      JI748_14635 infB; translation initiation factor IF-2	K02519 infB; translation initiation factor IF-2
D      JI748_14125 translation initiation factor IF-3	K02520 infC; translation initiation factor IF-3
D      JI748_05780 elongation factor Ts	K02357 tsf; elongation factor Ts
D      JI748_05430 tuf; elongation factor Tu	K02358 tuf; elongation factor Tu
D      JI748_05425 fusA; elongation factor G	K02355 fusA; elongation factor G
D      JI748_08040 ubiquinol-cytochrome C chaperone	K17662 CBP3; cytochrome b pre-mRNA-processing protein 3
D      JI748_17145 helicase	K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6]
D      JI748_08130 era; GTPase Era	K03595 era; GTPase
D      JI748_07320 tyrosine--tRNA ligase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      JI748_15500 leucine--tRNA ligase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      JI748_06410 aspS; aspartate--tRNA ligase	K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D      JI748_07490 arginine--tRNA ligase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      JI748_06495 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D      JI748_08580 amidase	K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D      JI748_06470 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D      JI748_06510 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D      JI748_05710 ssb; single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein
D      JI748_05810 bamA; outer membrane protein assembly factor BamA	K07277 SAM50; outer membrane protein insertion porin family
D      JI748_15280 dnaK; molecular chaperone DnaK	K04043 dnaK; molecular chaperone DnaK
D      JI748_15260 grpE; nucleotide exchange factor GrpE	K03687 GRPE; molecular chaperone GrpE
D      JI748_10605 groL; chaperonin GroEL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D      JI748_10600 co-chaperone GroES	K04078 groES; chaperonin GroES
D      JI748_15295 dnaJ; molecular chaperone DnaJ	K03686 dnaJ; molecular chaperone DnaJ
D      JI748_07310 aminotransferase class V-fold PLP-dependent enzyme	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D      JI748_04735 grxD; Grx4 family monothiol glutaredoxin	K07390 grxD; monothiol glutaredoxin
D      JI748_10705 Mrp/NBP35 family ATP-binding protein	K03593 mrp; ATP-binding protein involved in chromosome partitioning
D      JI748_10205 protoheme IX farnesyltransferase	K02257 COX10; heme o synthase [EC:2.5.1.141]
D      JI748_10195 cytochrome c oxidase assembly protein	K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D      JI748_07915 COX15/CtaA family protein	K02259 COX15; heme a synthase [EC:1.17.99.9]
D      JI748_01540 yidC; membrane protein insertase YidC	K03217 yidC; YidC/Oxa1 family membrane protein insertase
D      JI748_10185 SURF1 family protein	K14998 SURF1; surfeit locus 1 family protein
D      JI748_03295 SCO family protein	K07152 SCO1; protein SCO1
D      JI748_10810 SCO family protein	K07152 SCO1; protein SCO1
D      JI748_13790 SCO family protein	K07152 SCO1; protein SCO1
B
B  09183 Protein families: signaling and cellular processes
C    02000 Transporters [BR:drh02000]
D      JI748_10315 ABC transporter ATP-binding protein	K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D      JI748_10310 ABC transporter ATP-binding protein	K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D      JI748_08700 ABC transporter ATP-binding protein/permease	K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D      JI748_08890 ABC transporter ATP-binding protein	K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D      JI748_08895 ABC transporter ATP-binding protein	K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D      JI748_00845 ATP-binding cassette domain-containing protein	K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D      JI748_01260 ABC transporter ATP-binding protein	K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D      JI748_07370 ABC transporter ATP-binding protein	K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D      JI748_07515 ABC transporter ATP-binding protein	K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D      JI748_13050 ABC transporter ATP-binding protein	K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D      JI748_05180 type I secretion system permease/ATPase	K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D      JI748_16280 type I secretion system permease/ATPase	K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D      JI748_09365 cydC; thiol reductant ABC exporter subunit CydC	K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D      JI748_09360 cydD; thiol reductant ABC exporter subunit CydD	K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D      JI748_13545 ATP-binding cassette domain-containing protein	K15738 uup; ABC transport system ATP-binding/permease protein
D      JI748_05630 sulfate ABC transporter substrate-binding protein	K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D      JI748_03595 sulfate ABC transporter substrate-binding protein	K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D      JI748_03605 cysT; sulfate ABC transporter permease subunit CysT	K02046 cysU; sulfate/thiosulfate transport system permease protein
D      JI748_05625 cysT; sulfate ABC transporter permease subunit CysT	K02046 cysU; sulfate/thiosulfate transport system permease protein
D      JI748_03610 cysW; sulfate ABC transporter permease subunit CysW	K02047 cysW; sulfate/thiosulfate transport system permease protein
D      JI748_05620 cysW; sulfate ABC transporter permease subunit CysW	K02047 cysW; sulfate/thiosulfate transport system permease protein
D      JI748_03615 sulfate/molybdate ABC transporter ATP-binding protein	K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D      JI748_00310 modA; molybdate ABC transporter substrate-binding protein	K02020 modA; molybdate transport system substrate-binding protein
D      JI748_00315 modB; molybdate ABC transporter permease subunit	K02018 modB; molybdate transport system permease protein
D      JI748_12025 tauA; taurine ABC transporter substrate-binding protein	K15551 tauA; taurine transport system substrate-binding protein
D      JI748_12015 ABC transporter permease subunit	K15552 tauC; taurine transport system permease protein
D      JI748_12020 ATP-binding cassette domain-containing protein	K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D      JI748_11790 extracellular solute-binding protein	K02012 afuA; iron(III) transport system substrate-binding protein
D      JI748_11805 extracellular solute-binding protein	K02012 afuA; iron(III) transport system substrate-binding protein
D      JI748_16385 extracellular solute-binding protein	K02012 afuA; iron(III) transport system substrate-binding protein
D      JI748_11780 iron ABC transporter permease	K02011 afuB; iron(III) transport system permease protein
D      JI748_11795 iron ABC transporter permease	K02011 afuB; iron(III) transport system permease protein
D      JI748_16380 iron ABC transporter permease	K02011 afuB; iron(III) transport system permease protein
D      JI748_11785 ABC transporter ATP-binding protein	K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D      JI748_11800 ABC transporter ATP-binding protein	K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D      JI748_16375 ABC transporter ATP-binding protein	K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D      JI748_00855 thiamine ABC transporter substrate binding subunit	K02064 thiB; thiamine transport system substrate-binding protein
D      JI748_00860 hypothetical protein	K02063 thiP; thiamine transport system permease protein
D      JI748_00865 ATP-binding cassette domain-containing protein	K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D      JI748_16610 polyamine ABC transporter substrate-binding protein	K11073 potF; putrescine transport system substrate-binding protein
D      JI748_16595 ABC transporter permease subunit	K11074 potI; putrescine transport system permease protein
D      JI748_16600 ABC transporter permease subunit	K11075 potH; putrescine transport system permease protein
D      JI748_16605 potA; polyamine ABC transporter ATP-binding protein	K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D      JI748_02000 ABC transporter substrate-binding protein	K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D      JI748_11150 polyamine ABC transporter substrate-binding protein	K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D      JI748_01990 ABC transporter permease subunit	K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D      JI748_11160 ABC transporter permease	K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D      JI748_01995 ABC transporter permease subunit	K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D      JI748_11155 ABC transporter permease	K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D      JI748_01985 ABC transporter ATP-binding protein	K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D      JI748_11165 ABC transporter ATP-binding protein	K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D      JI748_12125 proX; glycine betaine/L-proline ABC transporter substrate-binding protein ProX	K02002 proX; glycine betaine/proline transport system substrate-binding protein
D      JI748_16765 hypothetical protein	K02002 proX; glycine betaine/proline transport system substrate-binding protein
D      JI748_12120 proline/glycine betaine ABC transporter permease	K02001 proW; glycine betaine/proline transport system permease protein
D      JI748_12115 glycine betaine/L-proline ABC transporter ATP-binding protein	K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D      JI748_03100 ABC transporter substrate-binding protein	K05845 opuC; osmoprotectant transport system substrate-binding protein
D      JI748_07350 ABC transporter substrate-binding protein	K05845 opuC; osmoprotectant transport system substrate-binding protein
D      JI748_07355 ABC transporter permease	K05846 opuBD; osmoprotectant transport system permease protein
D      JI748_07365 ABC transporter permease	K05846 opuBD; osmoprotectant transport system permease protein
D      JI748_07360 ABC transporter ATP-binding protein	K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D      JI748_12170 ABC transporter substrate-binding protein	K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D      JI748_13705 ABC transporter substrate-binding protein	K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D      JI748_12150 ABC transporter permease	K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D      JI748_13695 ABC transporter permease	K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D      JI748_13700 ABC transporter permease	K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D      JI748_12155 ABC transporter ATP-binding protein	K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D      JI748_13690 ABC transporter ATP-binding protein	K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D      JI748_00190 ABC transporter ATP-binding protein	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_02025 ABC transporter ATP-binding protein	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_11310 ABC transporter ATP-binding protein	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_12955 ABC transporter ATP-binding protein	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_13090 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_13955 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_00240 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_07675 ABC transporter ATP-binding protein	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_08585 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_10905 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_11035 ABC transporter ATP-binding protein	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_11080 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_12875 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_16325 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_00175 extracellular solute-binding protein	K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D      JI748_11315 extracellular solute-binding protein	K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D      JI748_00180 sugar ABC transporter permease	K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D      JI748_11320 sugar ABC transporter permease	K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D      JI748_00185 carbohydrate ABC transporter permease	K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D      JI748_11325 carbohydrate ABC transporter permease	K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D      JI748_00255 hypothetical protein	K10232 aglE; alpha-glucoside transport system substrate-binding protein
D      JI748_00250 sugar ABC transporter permease	K10233 aglF; alpha-glucoside transport system permease protein
D      JI748_00245 carbohydrate ABC transporter permease	K10234 aglG; alpha-glucoside transport system permease protein
D      JI748_07690 carbohydrate ABC transporter substrate-binding protein	K17315 gtsA; glucose/mannose transport system substrate-binding protein
D      JI748_16340 carbohydrate ABC transporter substrate-binding protein	K17315 gtsA; glucose/mannose transport system substrate-binding protein
D      JI748_07685 sugar ABC transporter permease	K17316 gtsB; glucose/mannose transport system permease protein
D      JI748_16335 sugar ABC transporter permease	K17316 gtsB; glucose/mannose transport system permease protein
D      JI748_07680 carbohydrate ABC transporter permease	K17317 gtsC; glucose/mannose transport system permease protein
D      JI748_16330 carbohydrate ABC transporter permease	K17317 gtsC; glucose/mannose transport system permease protein
D      JI748_02010 ABC transporter substrate-binding protein	K10236 thuE; trehalose/maltose transport system substrate-binding protein
D      JI748_02015 sugar ABC transporter permease	K10237 thuF; trehalose/maltose transport system permease protein
D      JI748_02020 carbohydrate ABC transporter permease	K10238 thuG; trehalose/maltose transport system permease protein
D      JI748_07975 sugar ABC transporter substrate-binding protein	K10188 lacE; lactose/L-arabinose transport system substrate-binding protein
D      JI748_07980 sugar ABC transporter permease	K10189 lacF; lactose/L-arabinose transport system permease protein
D      JI748_07985 carbohydrate ABC transporter permease	K10190 lacG; lactose/L-arabinose transport system permease protein
D      JI748_07990 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	K10191 lacK; lactose/L-arabinose transport system ATP-binding protein
D      JI748_10920 extracellular solute-binding protein	K17318 lplA; putative aldouronate transport system substrate-binding protein
D      JI748_10930 sugar ABC transporter permease	K17319 lplB; putative aldouronate transport system permease protein
D      JI748_10925 carbohydrate ABC transporter permease	K17320 lplC; putative aldouronate transport system permease protein
D      JI748_01950 sugar-binding protein	K10546 chvE; putative multiple sugar transport system substrate-binding protein
D      JI748_12765 sugar-binding protein	K10546 chvE; putative multiple sugar transport system substrate-binding protein
D      JI748_01960 sugar ABC transporter permease	K10547 gguB; putative multiple sugar transport system permease protein
D      JI748_01955 ATP-binding cassette domain-containing protein	K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_09305 rhaS; rhamnose ABC transporter substrate-binding protein	K10559 rhaS; rhamnose transport system substrate-binding protein
D      JI748_09295 ABC transporter permease	K10560 rhaP; rhamnose transport system permease protein
D      JI748_09290 ABC transporter permease	K10561 rhaQ; rhamnose transport system permease protein
D      JI748_09300 sugar ABC transporter ATP-binding protein	K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_09390 substrate-binding domain-containing protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_10855 substrate-binding domain-containing protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_13230 substrate-binding domain-containing protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_16425 ABC transporter substrate-binding protein	K10439 rbsB; ribose transport system substrate-binding protein
D      JI748_09395 ABC transporter permease	K10440 rbsC; ribose transport system permease protein
D      JI748_10860 ABC transporter permease	K10440 rbsC; ribose transport system permease protein
D      JI748_13225 ABC transporter permease	K10440 rbsC; ribose transport system permease protein
D      JI748_16430 ABC transporter permease	K10440 rbsC; ribose transport system permease protein
D      JI748_09400 sugar ABC transporter ATP-binding protein	K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D      JI748_10865 sugar ABC transporter ATP-binding protein	K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D      JI748_13215 sugar ABC transporter ATP-binding protein	K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D      JI748_16435 sugar ABC transporter ATP-binding protein	K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D      JI748_01630 ABC transporter substrate-binding protein	K23508 ytfQ; galactofuranose transport system substrate-binding protein
D      JI748_01640 ABC transporter permease	K23509 ytfT; galactofuranose transport system permease protein
D      JI748_01645 yjfF; sugar ABC transporter permease YjfF	K23509 ytfT; galactofuranose transport system permease protein
D      JI748_01635 sugar ABC transporter ATP-binding protein	K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D      JI748_00155 D-ribose ABC transporter substrate-binding protein	K17202 eryG; erythritol transport system substrate-binding protein
D      JI748_00145 ABC transporter permease	K17203 eryF; erythritol transport system permease protein
D      JI748_00140 sugar ABC transporter ATP-binding protein	K17204 eryE; erythritol transport system ATP-binding protein
D      JI748_13220 ABC transporter permease	K17206 xltB; putative xylitol transport system permease protein
D      JI748_03640 ugpB; sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D      JI748_03635 ugpA; sn-glycerol-3-phosphate ABC transporter permease UgpA	K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D      JI748_03630 ugpE; sn-glycerol-3-phosphate ABC transporter permease UgpE	K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D      JI748_03625 sn-glycerol-3-phosphate import ATP-binding protein UgpC	K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D      JI748_12940 sugar ABC transporter substrate-binding protein	K10227 smoE; polyol transport system substrate-binding protein
D      JI748_12945 sugar ABC transporter permease	K10228 smoF; polyol transport system permease protein
D      JI748_12950 carbohydrate ABC transporter permease	K10229 smoG; polyol transport system permease protein
D      JI748_13930 carbohydrate ABC transporter substrate-binding protein	K25676 yesO; pectin-derived oligosaccharide transport system substrate-binding protein
D      JI748_13935 sugar ABC transporter permease	K25677 yesP; pectin-derived oligosaccharide transport system permease protein
D      JI748_13940 carbohydrate ABC transporter permease	K25678 yesQ; pectin-derived oligosaccharide transport system permease protein
D      JI748_02180 BMP family ABC transporter substrate-binding protein	K07335 bmpA; basic membrane protein A and related proteins
D      JI748_11140 BMP family protein	K07335 bmpA; basic membrane protein A and related proteins
D      JI748_12520 BMP family ABC transporter substrate-binding protein	K07335 bmpA; basic membrane protein A and related proteins
D      JI748_02170 ABC transporter permease	K23535 nupB; general nucleoside transport system permease protein
D      JI748_11130 ABC transporter permease	K23535 nupB; general nucleoside transport system permease protein
D      JI748_12510 ABC transporter permease	K23535 nupB; general nucleoside transport system permease protein
D      JI748_02175 ABC transporter permease	K23536 nupC; general nucleoside transport system permease protein
D      JI748_11125 ABC transporter permease	K23536 nupC; general nucleoside transport system permease protein
D      JI748_12505 ABC transporter permease	K23536 nupC; general nucleoside transport system permease protein
D      JI748_02165 ABC transporter ATP-binding protein	K23537 nupA; general nucleoside transport system ATP-binding protein
D      JI748_11135 ABC transporter ATP-binding protein	K23537 nupA; general nucleoside transport system ATP-binding protein
D      JI748_12515 ABC transporter ATP-binding protein	K23537 nupA; general nucleoside transport system ATP-binding protein
D      JI748_08600 extracellular solute-binding protein	K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D      JI748_11050 sugar ABC transporter substrate-binding protein	K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D      JI748_11095 sugar ABC transporter substrate-binding protein	K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D      JI748_12870 extracellular solute-binding protein	K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D      JI748_13095 extracellular solute-binding protein	K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D      JI748_08595 sugar ABC transporter permease	K02025 ABC.MS.P; multiple sugar transport system permease protein
D      JI748_11045 sugar ABC transporter permease	K02025 ABC.MS.P; multiple sugar transport system permease protein
D      JI748_11090 sugar ABC transporter permease	K02025 ABC.MS.P; multiple sugar transport system permease protein
D      JI748_12865 sugar ABC transporter permease	K02025 ABC.MS.P; multiple sugar transport system permease protein
D      JI748_13105 sugar ABC transporter permease	K02025 ABC.MS.P; multiple sugar transport system permease protein
D      JI748_08590 carbohydrate ABC transporter permease	K02026 ABC.MS.P1; multiple sugar transport system permease protein
D      JI748_11040 carbohydrate ABC transporter permease	K02026 ABC.MS.P1; multiple sugar transport system permease protein
D      JI748_11085 carbohydrate ABC transporter permease	K02026 ABC.MS.P1; multiple sugar transport system permease protein
D      JI748_12860 carbohydrate ABC transporter permease	K02026 ABC.MS.P1; multiple sugar transport system permease protein
D      JI748_13100 carbohydrate ABC transporter permease	K02026 ABC.MS.P1; multiple sugar transport system permease protein
D      JI748_12665 substrate-binding domain-containing protein	K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D      JI748_12670 ABC transporter permease	K02057 ABC.SS.P; simple sugar transport system permease protein
D      JI748_12675 sugar ABC transporter ATP-binding protein	K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      JI748_02990 substrate-binding domain-containing protein	K02040 pstS; phosphate transport system substrate-binding protein
D      JI748_02985 pstC; phosphate ABC transporter permease subunit PstC	K02037 pstC; phosphate transport system permease protein
D      JI748_02980 pstA; phosphate ABC transporter permease PstA	K02038 pstA; phosphate transport system permease protein
D      JI748_02975 phosphate ABC transporter ATP-binding protein	K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D      JI748_14020 phnD; phosphonate ABC transporter substrate-binding protein	K02044 phnD; phosphonate transport system substrate-binding protein
D      JI748_14025 phnE; phosphonate ABC transporter, permease protein PhnE	K02042 phnE; phosphonate transport system permease protein
D      JI748_14030 phnE; phosphonate ABC transporter, permease protein PhnE	K02042 phnE; phosphonate transport system permease protein
D      JI748_14015 phnC; phosphonate ABC transporter ATP-binding protein	K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D      JI748_07605 transporter substrate-binding domain-containing protein	K09969 aapJ; general L-amino acid transport system substrate-binding protein
D      JI748_07625 amino acid ABC transporter substrate-binding protein	K09969 aapJ; general L-amino acid transport system substrate-binding protein
D      JI748_07620 amino acid ABC transporter permease	K09970 aapQ; general L-amino acid transport system permease protein
D      JI748_07615 amino acid ABC transporter permease	K09971 aapM; general L-amino acid transport system permease protein
D      JI748_07160 amino acid ABC transporter ATP-binding protein	K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D      JI748_07610 amino acid ABC transporter ATP-binding protein	K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D      JI748_09825 amino acid ABC transporter substrate-binding protein	K02424 tcyA; L-cystine transport system substrate-binding protein
D      JI748_09820 amino acid ABC transporter permease	K10009 tcyB; L-cystine transport system permease protein
D      JI748_09815 amino acid ABC transporter ATP-binding protein	K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D      JI748_03035 ABC transporter substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_03080 amino acid ABC transporter substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_06635 substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_16760 ABC transporter substrate-binding protein	K01999 livK; branched-chain amino acid transport system substrate-binding protein
D      JI748_06640 branched-chain amino acid ABC transporter permease	K01997 livH; branched-chain amino acid transport system permease protein
D      JI748_16745 branched-chain amino acid ABC transporter permease	K01997 livH; branched-chain amino acid transport system permease protein
D      JI748_16750 branched-chain amino acid ABC transporter permease	K01998 livM; branched-chain amino acid transport system permease protein
D      JI748_06650 ABC transporter ATP-binding protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      JI748_16735 ABC transporter ATP-binding protein	K01995 livG; branched-chain amino acid transport system ATP-binding protein
D      JI748_06655 ABC transporter ATP-binding protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      JI748_16740 ABC transporter ATP-binding protein	K01996 livF; branched-chain amino acid transport system ATP-binding protein
D      JI748_03800 urtA; urea ABC transporter substrate-binding protein	K11959 urtA; urea transport system substrate-binding protein
D      JI748_03795 urtB; urea ABC transporter permease subunit UrtB	K11960 urtB; urea transport system permease protein
D      JI748_03790 urtC; urea ABC transporter permease subunit UrtC	K11961 urtC; urea transport system permease protein
D      JI748_03785 urtD; urea ABC transporter ATP-binding protein UrtD	K11962 urtD; urea transport system ATP-binding protein
D      JI748_03780 urtE; urea ABC transporter ATP-binding subunit UrtE	K11963 urtE; urea transport system ATP-binding protein
D      JI748_01140 transporter substrate-binding domain-containing protein	K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D      JI748_01865 transporter substrate-binding domain-containing protein	K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D      JI748_07170 amino acid ABC transporter substrate-binding protein	K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D      JI748_11980 ABC transporter substrate-binding protein	K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D      JI748_11985 ABC transporter substrate-binding protein	K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D      JI748_12625 transporter substrate-binding domain-containing protein	K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D      JI748_13850 transporter substrate-binding domain-containing protein	K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D      JI748_01855 ABC transporter permease subunit	K02029 ABC.PA.P; polar amino acid transport system permease protein
D      JI748_01860 ABC transporter permease subunit	K02029 ABC.PA.P; polar amino acid transport system permease protein
D      JI748_07165 amino acid ABC transporter permease	K02029 ABC.PA.P; polar amino acid transport system permease protein
D      JI748_11975 amino acid ABC transporter permease/ATP-binding protein	K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D      JI748_13855 amino acid ABC transporter permease	K02029 ABC.PA.P; polar amino acid transport system permease protein
D      JI748_01870 amino acid ABC transporter ATP-binding protein	K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D      JI748_00620 peptide ABC transporter substrate-binding protein	K15580 oppA; oligopeptide transport system substrate-binding protein
D      JI748_00625 ABC transporter permease subunit	K15581 oppB; oligopeptide transport system permease protein
D      JI748_00630 ABC transporter permease subunit	K15582 oppC; oligopeptide transport system permease protein
D      JI748_00635 ATP-binding cassette domain-containing protein	K15583 oppD; oligopeptide transport system ATP-binding protein
D      JI748_11860 ABC transporter ATP-binding protein	K15583 oppD; oligopeptide transport system ATP-binding protein
D      JI748_00640 ATP-binding cassette domain-containing protein	K10823 oppF; oligopeptide transport system ATP-binding protein
D      JI748_11855 ATP-binding cassette domain-containing protein	K10823 oppF; oligopeptide transport system ATP-binding protein
D      JI748_07120 peptide ABC transporter substrate-binding protein	K12368 dppA; dipeptide transport system substrate-binding protein
D      JI748_13485 ABC transporter substrate-binding protein	K12368 dppA; dipeptide transport system substrate-binding protein
D      JI748_07115 ABC transporter permease	K12369 dppB; dipeptide transport system permease protein
D      JI748_13490 ABC transporter permease subunit	K12369 dppB; dipeptide transport system permease protein
D      JI748_07110 ABC transporter permease	K12370 dppC; dipeptide transport system permease protein
D      JI748_13495 ABC transporter permease subunit	K12370 dppC; dipeptide transport system permease protein
D      JI748_07105 ABC transporter ATP-binding protein	K12371 dppD; dipeptide transport system ATP-binding protein
D      JI748_13500 ABC transporter ATP-binding protein	K12371 dppD; dipeptide transport system ATP-binding protein
D      JI748_07100 ABC transporter ATP-binding protein	K12372 dppF; dipeptide transport system ATP-binding protein
D      JI748_13505 dipeptide ABC transporter ATP-binding protein	K12372 dppF; dipeptide transport system ATP-binding protein
D      JI748_06990 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_07025 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_09760 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_10670 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_10985 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_11215 peptide ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_11295 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_11670 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_11875 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_12725 ABC transporter substrate-binding protein	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      JI748_06980 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_07040 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_09775 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_10675 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_10980 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_11210 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_11290 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_11665 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_11865 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_12720 ABC transporter permease	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      JI748_06975 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_07035 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_09780 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_10680 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_10975 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_11205 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_11285 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_11660 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_11870 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_12715 ABC transporter permease	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      JI748_06965 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_07030 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_09765 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_10685 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_10955 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_11230 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_11280 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_11680 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_12710 ABC transporter ATP-binding protein	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      JI748_06960 ATP-binding cassette domain-containing protein	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      JI748_09770 ABC transporter ATP-binding protein	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      JI748_11225 dipeptide ABC transporter ATP-binding protein	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      JI748_11675 ATP-binding cassette domain-containing protein	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      JI748_01725 ABC transporter substrate-binding protein	K13893 yejA; microcin C transport system substrate-binding protein
D      JI748_01740 microcin C ABC transporter permease YejB	K13894 yejB; microcin C transport system permease protein
D      JI748_01735 ABC transporter permease	K13895 yejE; microcin C transport system permease protein
D      JI748_01730 ABC transporter ATP-binding protein	K13896 yejF; microcin C transport system ATP-binding protein
D      JI748_09725 hemin ABC transporter substrate-binding protein	K25132 hmuT; heme transport system substrate-binding protein
D      JI748_09720 iron ABC transporter permease	K25133 hmuU; heme transport system permease protein
D      JI748_09715 heme ABC transporter ATP-binding protein	K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D      JI748_07785 ABC transporter substrate-binding protein	K25287 desE; iron-desferrioxamine transport system substrate-binding protein
D      JI748_07810 ABC transporter substrate-binding protein	K25286 fagD; iron-siderophore transport system substrate-binding protein
D      JI748_07850 iron-siderophore ABC transporter substrate-binding protein	K25286 fagD; iron-siderophore transport system substrate-binding protein
D      JI748_07780 iron chelate uptake ABC transporter family permease subunit	K23186 fepD; iron-siderophore transport system permease protein
D      JI748_07845 iron ABC transporter permease	K23186 fepD; iron-siderophore transport system permease protein
D      JI748_07775 iron chelate uptake ABC transporter family permease subunit	K23187 fepG; iron-siderophore transport system permease protein
D      JI748_07840 iron ABC transporter permease	K23187 fepG; iron-siderophore transport system permease protein
D      JI748_07770 ABC transporter ATP-binding protein	K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D      JI748_10330 ABC transporter substrate-binding protein	K25282 yclQ; iron-siderophore transport system substrate-binding protein
D      JI748_10340 iron chelate uptake ABC transporter family permease subunit	K25283 yclO; iron-siderophore transport system permease protein
D      JI748_10335 iron chelate uptake ABC transporter family permease subunit	K25284 yclN; iron-siderophore transport system permease protein
D      JI748_10345 ABC transporter ATP-binding protein	K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D      JI748_01610 putative F420-0 ABC transporter substrate-binding protein	K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D      JI748_07815 ABC transporter substrate-binding protein	K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D      JI748_01605 iron chelate uptake ABC transporter family permease subunit	K02015 ABC.FEV.P; iron complex transport system permease protein
D      JI748_01600 ABC transporter ATP-binding protein	K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D      JI748_12855 ABC transporter ATP-binding protein	K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D      JI748_10510 zinc ABC transporter substrate-binding protein	K09815 znuA; zinc transport system substrate-binding protein
D      JI748_10520 metal ABC transporter permease	K09816 znuB; zinc transport system permease protein
D      JI748_10515 metal ABC transporter ATP-binding protein	K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D      JI748_14310 metal ABC transporter substrate-binding protein	K11604 sitA; manganese/iron transport system substrate-binding protein
D      JI748_14300 metal ABC transporter permease	K11605 sitC; manganese/iron transport system permease protein
D      JI748_14295 metal ABC transporter permease	K11606 sitD; manganese/iron transport system permease protein
D      JI748_14305 manganese/iron ABC transporter ATP-binding protein	K11607 sitB; manganese/iron transport system ATP-binding protein
D      JI748_09845 biotin transporter BioY	K03523 bioY; biotin transport system substrate-specific component
D      JI748_08350 LptF/LptG family permease	K07091 lptF; lipopolysaccharide export system permease protein
D      JI748_08355 LptF/LptG family permease	K11720 lptG; lipopolysaccharide export system permease protein
D      JI748_14540 lptB; LPS export ABC transporter ATP-binding protein	K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D      JI748_06825 ABC transporter permease	K09808 lolC_E; lipoprotein-releasing system permease protein
D      JI748_06820 ABC transporter ATP-binding protein	K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D      JI748_15605 heme ABC transporter permease	K02195 ccmC; heme exporter protein C
D      JI748_15610 ccmB; heme exporter protein CcmB	K02194 ccmB; heme exporter protein B
D      JI748_15615 ccmA; heme ABC exporter ATP-binding protein CcmA	K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D      JI748_16905 ABC transporter permease	K09811 ftsX; cell division transport system permease protein
D      JI748_16910 ftsE; cell division ATP-binding protein FtsE	K09812 ftsE; cell division transport system ATP-binding protein
D      JI748_01145 ABC transporter permease	K01992 ABC-2.P; ABC-2 type transport system permease protein
D      JI748_02800 permease	K01992 ABC-2.P; ABC-2 type transport system permease protein
D      JI748_03055 ABC transporter permease	K01992 ABC-2.P; ABC-2 type transport system permease protein
D      JI748_12800 ABC transporter permease	K01992 ABC-2.P; ABC-2 type transport system permease protein
D      JI748_14330 hypothetical protein	K01992 ABC-2.P; ABC-2 type transport system permease protein
D      JI748_01150 ATP-binding cassette domain-containing protein	K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D      JI748_02805 ABC transporter ATP-binding protein	K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D      JI748_03050 ATP-binding cassette domain-containing protein	K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D      JI748_12805 ABC transporter ATP-binding protein	K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D      JI748_14335 ABC transporter ATP-binding protein	K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D      JI748_00515 FtsX-like permease family protein	K02004 ABC.CD.P; putative ABC transport system permease protein
D      JI748_11360 FtsX-like permease family protein	K02004 ABC.CD.P; putative ABC transport system permease protein
D      JI748_00520 ABC transporter ATP-binding protein	K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D      JI748_11355 ABC transporter ATP-binding protein	K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D      JI748_07300 sufC; Fe-S cluster assembly ATPase SufC	K09013 sufC; Fe-S cluster assembly ATP-binding protein
D      JI748_04160 MATE family efflux transporter	K26939 norM; MATE family, multidrug efflux pump
D      JI748_05980 MATE family efflux transporter	K26937 dinF; MATE family, multidrug efflux pump
D      JI748_04335 MFS transporter	K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D      JI748_04940 TCR/Tet family MFS transporter	K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D      JI748_07200 TCR/Tet family MFS transporter	K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D      JI748_13415 tet; Tet(A)/Tet(B)/Tet(C) family tetracycline efflux MFS transporter	K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D      JI748_00750 multidrug effflux MFS transporter	K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D      JI748_04720 multidrug effflux MFS transporter	K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D      JI748_12140 DHA2 family efflux MFS transporter permease subunit	K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D      JI748_10040 multidrug efflux MFS transporter	K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D      JI748_06545 MFS transporter	K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D      JI748_07575 MFS transporter	K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D      JI748_08375 MFS transporter	K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D      JI748_17255 ptsP; phosphoenolpyruvate--protein phosphotransferase	K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D      JI748_13430 HPr family phosphocarrier protein	K02784 ptsH; phosphocarrier protein HPr
D      JI748_13435 PTS sugar transporter subunit IIA	K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D      JI748_12850 PTS sugar transporter subunit IIA	K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D      JI748_14555 PTS sugar transporter subunit IIA	K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D      JI748_06610 ion transporter	K10716 kch; voltage-gated potassium channel
D      JI748_14080 ammonium transporter	K03320 amt; ammonium transporter, Amt family
D      JI748_01065 glutathione S-transferase family protein	K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D      JI748_01690 glutathione S-transferase family protein	K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D      JI748_02240 glutathione S-transferase family protein	K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D      JI748_05695 glutathione S-transferase family protein	K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D      JI748_14100 glutathione S-transferase family protein	K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D      JI748_01100 VWA domain-containing protein	K07114 yfbK; Ca-activated chloride channel homolog
D      JI748_04620 VWA domain-containing protein	K07114 yfbK; Ca-activated chloride channel homolog
D      JI748_12260 mscL; large conductance mechanosensitive channel protein MscL	K03282 mscL; large conductance mechanosensitive channel
D      JI748_06780 mechanosensitive ion channel family protein	K03442 mscS; small conductance mechanosensitive channel
D      JI748_00010 mechanosensitive ion channel	K22044 ybiO; moderate conductance mechanosensitive channel
D      JI748_05690 mgtE; magnesium transporter	K06213 mgtE; magnesium transporter
D      JI748_02780 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_03405 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_03485 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_01325 peptidoglycan -binding protein	K02557 motB; chemotaxis protein MotB
D      JI748_02785 OmpA family protein	K02557 motB; chemotaxis protein MotB
D      JI748_01475 tolQ; protein TolQ	K03562 tolQ; biopolymer transport protein TolQ
D      JI748_09705 tolQ; protein TolQ	K03562 tolQ; biopolymer transport protein TolQ
D      JI748_01480 biopolymer transporter ExbD	K03560 tolR; biopolymer transport protein TolR
D      JI748_09700 biopolymer transporter ExbD	K03560 tolR; biopolymer transport protein TolR
D      JI748_07520 hypothetical protein	K16074 zntB; zinc transporter
D      JI748_05590 crcB; fluoride efflux transporter CrcB	K06199 crcB; fluoride exporter
D      JI748_08480 HlyC/CorC family transporter	K03699 tlyC; magnesium and cobalt exporter, CNNM family
D      JI748_00710 porin family protein	K16079 omp31; outer membrane immunogenic protein
D      JI748_06925 hypothetical protein	K16079 omp31; outer membrane immunogenic protein
D      JI748_09740 TonB-dependent receptor	K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D      JI748_07535 TolC family outer membrane protein	K12340 tolC; outer membrane protein
D      JI748_07935 polysaccharide export protein	K01991 wza; polysaccharide biosynthesis/export protein
D      JI748_05810 bamA; outer membrane protein assembly factor BamA	K07277 SAM50; outer membrane protein insertion porin family
D      JI748_04035 outer membrane protein assembly factor BamD	K05807 bamD; outer membrane protein assembly factor BamD
D      JI748_01715 outer membrane protein assembly factor	K07278 tamA; translocation and assembly module TamA
D      JI748_01720 translocation/assembly module TamB domain-containing protein	K09800 tamB; translocation and assembly module TamB
D      JI748_14535 LptA/OstA family protein	K09774 lptA; lipopolysaccharide export system protein LptA
D      JI748_14530 hypothetical protein	K11719 lptC; lipopolysaccharide export system protein LptC
D      JI748_00265 LPS-assembly protein LptD	K04744 lptD; LPS-assembly protein
D      JI748_12740 cellulose synthase	K20543 bcsC; cellulose synthase operon protein C
D      JI748_14365 HlyC/CorC family transporter	K06189 corC; hemolysin (HlyC) family protein
D      JI748_01250 cation transporter	K16264 czcD; cobalt-zinc-cadmium efflux system protein
D      JI748_03360 cation transporter	K16264 czcD; cobalt-zinc-cadmium efflux system protein
D      JI748_10075 ZIP family metal transporter	K07238 TC.ZIP; zinc transporter, ZIP family
D      JI748_08685 efflux RND transporter permease subunit	K18989 vexF; multidrug efflux pump
D      JI748_16050 EamA family transporter	K15268 eamA; O-acetylserine/cysteine efflux transporter
D      JI748_16560 EamA family transporter	K11939 rhtA; inner membrane transporter RhtA
D      JI748_03860 rarD; EamA family transporter RarD	K05786 rarD; chloramphenicol-sensitive protein RarD
D      JI748_02955 DMT family transporter	K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D      JI748_02960 DMT family transporter	K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D      JI748_06795 DMT family transporter	K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D      JI748_00835 YnfA family protein	K09771 TC.SMR3; small multidrug resistance family-3 protein
D      JI748_11390 cation:proton antiporter	K24160 NHA1; sodium/hydrogen antiporter
D      JI748_03665 cation:proton antiporter	K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D      JI748_16580 cation:proton antiporter	K26735 KEA4_5_6; K+:H+ antiporter
D      JI748_07560 benzoate/H(+) symporter BenE family transporter	K05782 benE; benzoate membrane transport protein
D      JI748_09145 chrA; chromate efflux transporter	K07240 chrA; chromate transporter
D      JI748_06025 SulP family inorganic anion transporter	K03321 TC.SULP; sulfate permease, SulP family
D      JI748_03400 Nramp family divalent metal transporter	K03322 mntH; manganese transport protein
D      JI748_03165 TRAP transporter large permease	K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D      JI748_03130 TRAP transporter large permease subunit	K21393 yiaN; TRAP-type transport system large permease protein
D      JI748_03125 TRAP transporter small permease	K21394 yiaM; TRAP-type transport system small permease protein
D      JI748_03115 TRAP transporter substrate-binding protein	K21395 yiaO; TRAP-type transport system periplasmic protein
D      JI748_03540 arsB; ACR3 family arsenite efflux transporter	K03325 ACR3; arsenite transporter
D      JI748_12820 monovalent cation/H+ antiporter subunit A	K05559 phaA; multicomponent K+:H+ antiporter subunit A
D      JI748_12825 Na+/H+ antiporter subunit C	K05560 phaC; multicomponent K+:H+ antiporter subunit C
D      JI748_12830 monovalent cation/H+ antiporter subunit D	K05561 phaD; multicomponent K+:H+ antiporter subunit D
D      JI748_12835 Na+/H+ antiporter subunit E	K05562 phaE; multicomponent K+:H+ antiporter subunit E
D      JI748_12840 K+/H+ antiporter subunit F	K05563 phaF; multicomponent K+:H+ antiporter subunit F
D      JI748_12845 cation:proton antiporter	K05564 phaG; multicomponent K+:H+ antiporter subunit G
D      JI748_09240 putative monovalent cation/H+ antiporter subunit A	K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D      JI748_09235 Na(+)/H(+) antiporter subunit B	K05566 mnhB; multicomponent Na+:H+ antiporter subunit B
D      JI748_09230 Na+/H+ antiporter subunit C	K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D      JI748_09225 Na+/H+ antiporter subunit D	K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D      JI748_09220 Na+/H+ antiporter subunit E	K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D      JI748_09215 cation:proton antiporter	K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D      JI748_09210 monovalent cation/H(+) antiporter subunit G	K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D      JI748_14765 murJ; murein biosynthesis integral membrane protein MurJ	K03980 murJ; putative peptidoglycan lipid II flippase
D      JI748_10765 AEC family transporter	K13936 mdcF; malonate transporter and related proteins
D      JI748_04195 potassium transporter Kup	K03549 kup; KUP system potassium uptake protein
D      JI748_05975 AzlC family ABC transporter permease	K26605 azlC; branched chain amino acid efflux pump
D      JI748_05970 AzlD domain-containing protein	K26606 azlD; branched chain amino acid efflux pump
D      JI748_01590 tripartite tricarboxylate transporter permease	K07793 tctA; putative tricarboxylic transport membrane protein
D      JI748_11730 tripartite tricarboxylate transporter permease	K07793 tctA; putative tricarboxylic transport membrane protein
D      JI748_16530 tripartite tricarboxylate transporter permease	K07793 tctA; putative tricarboxylic transport membrane protein
D      JI748_01585 tripartite tricarboxylate transporter TctB family protein	K07794 tctB; putative tricarboxylic transport membrane protein
D      JI748_11735 tripartite tricarboxylate transporter TctB family protein	K07794 tctB; putative tricarboxylic transport membrane protein
D      JI748_12040 tripartite tricarboxylate transporter TctB family protein	K07794 tctB; putative tricarboxylic transport membrane protein
D      JI748_16525 tripartite tricarboxylate transporter TctB family protein	K07794 tctB; putative tricarboxylic transport membrane protein
D      JI748_01580 tripartite tricarboxylate transporter substrate binding protein BugD	K07795 tctC; putative tricarboxylic transport membrane protein
D      JI748_12045 tripartite tricarboxylate transporter substrate binding protein	K07795 tctC; putative tricarboxylic transport membrane protein
D      JI748_16520 tripartite tricarboxylate transporter substrate binding protein	K07795 tctC; putative tricarboxylic transport membrane protein
D      JI748_17130 queuosine precursor transporter	K09125 yhhQ; queuosine precursor transporter
D      JI748_13775 rubrerythrin family protein	K22737 mbfA; erythrin-vacuolar iron transport family protein
D      JI748_03990 cell division protein FtsW	K03588 ftsW; cell division protein FtsW
D      JI748_02485 DUF1007 family protein	K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D      JI748_09695 energy transducer TonB	K03832 tonB; periplasmic protein TonB
D      JI748_01320 pal; peptidoglycan-associated lipoprotein Pal	K03640 pal; peptidoglycan-associated lipoprotein
D      JI748_01490 tolB; Tol-Pal system protein TolB	K03641 tolB; TolB protein
D      JI748_15715 sodium-translocating pyrophosphatase	K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D      JI748_04820 cytochrome c biogenesis protein CcdA	K06196 ccdA; cytochrome c-type biogenesis protein
D      JI748_12135 HlyD family secretion protein	K03543 emrA; membrane fusion protein, multidrug efflux system
D      JI748_05190 HlyD family type I secretion periplasmic adaptor subunit	K12537 hasE; membrane fusion protein, type I secretion system
D      JI748_16270 HlyD family type I secretion periplasmic adaptor subunit	K12537 hasE; membrane fusion protein, type I secretion system
D      JI748_08680 efflux RND transporter periplasmic adaptor subunit	K18990 vexE; membrane fusion protein, multidrug efflux system
D      JI748_05045 AAA family ATPase	K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D      JI748_07930 GumC family protein	K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D      JI748_04685 sbmA; peptide antibiotic transporter SbmA	K17938 sbmA; peptide/bleomycin uptake transporter
D      JI748_08515 tryptophan-rich sensory protein	K05770 TSPO; translocator protein
D      JI748_08935 heme lyase CcmF/NrfE family subunit	K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D      JI748_02215 MgtC/SapB family protein	K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D      JI748_13355 MgtC/SapB family protein	K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D      JI748_02145 uraH; hydroxyisourate hydrolase	K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C    02044 Secretion system [BR:drh02044]
D      JI748_07535 TolC family outer membrane protein	K12340 tolC; outer membrane protein
D      JI748_05180 type I secretion system permease/ATPase	K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D      JI748_16280 type I secretion system permease/ATPase	K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D      JI748_05190 HlyD family type I secretion periplasmic adaptor subunit	K12537 hasE; membrane fusion protein, type I secretion system
D      JI748_16270 HlyD family type I secretion periplasmic adaptor subunit	K12537 hasE; membrane fusion protein, type I secretion system
D      JI748_12440 prepilin peptidase	K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D      JI748_12435 cpaB; Flp pilus assembly protein CpaB	K02279 cpaB; pilus assembly protein CpaB
D      JI748_12430 type II and III secretion system protein family protein	K02280 cpaC; pilus assembly protein CpaC
D      JI748_12425 AAA family ATPase	K02282 cpaE; pilus assembly protein CpaE
D      JI748_12420 CpaF family protein	K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D      JI748_12415 type II secretion system F family protein	K12510 tadB; tight adherence protein B
D      JI748_12410 type II secretion system F family protein	K12511 tadC; tight adherence protein C
D      JI748_14345 hypothetical protein	K27080 tadG; tight adherence protein G
D      JI748_12445 Flp family type IVb pilin	K02651 flp; pilus assembly protein Flp/PilA
D      JI748_15590 Flp family type IVb pilin	K02651 flp; pilus assembly protein Flp/PilA
D      JI748_17025 Flp family type IVb pilin	K02651 flp; pilus assembly protein Flp/PilA
D      JI748_15710 YggT family protein	K02221 yggT; YggT family protein
D      JI748_05845 ComEC/Rec2 family competence protein	K02238 comEC; competence protein ComEC
D      JI748_01035 flhA; flagellar biosynthesis protein FlhA	K02400 flhA; flagellar biosynthesis protein FlhA
D      JI748_04590 flhB; flagellar biosynthesis protein FlhB	K02401 flhB; flagellar biosynthesis protein FlhB
D      JI748_06585 EscU/YscU/HrcU family type III secretion system export apparatus switch protein	K04061 flhB2; flagellar biosynthesis protein
D      JI748_01060 fliF; flagellar M-ring protein FliF	K02409 fliF; flagellar M-ring protein FliF
D      JI748_01050 hypothetical protein	K02411 fliH; flagellar assembly protein FliH
D      JI748_01005 fliI; flagellar protein export ATPase FliI	K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D      JI748_01045 fliN; flagellar motor switch protein FliN	K02417 fliN; flagellar motor switch protein FliN
D      JI748_05670 FliM/FliN family flagellar motor switch protein	K02417 fliN; flagellar motor switch protein FliN
D      JI748_04555 fliP; flagellar type III secretion system pore protein FliP	K02419 fliP; flagellar biosynthesis protein FliP
D      JI748_04580 fliQ; flagellar biosynthesis protein FliQ	K02420 fliQ; flagellar biosynthesis protein FliQ
D      JI748_04585 fliR; flagellar type III secretion system protein FliR	K02421 fliR; flagellar biosynthesis protein FliR
D      JI748_17060 secA; preprotein translocase subunit SecA	K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D      JI748_15430 secB; protein-export chaperone SecB	K03071 secB; preprotein translocase subunit SecB
D      JI748_07430 secD; protein translocase subunit SecD	K12257 secDF; SecD/SecF fusion protein
D      JI748_05360 secE; preprotein translocase subunit SecE	K03073 secE; preprotein translocase subunit SecE
D      JI748_06195 secG; preprotein translocase subunit SecG	K03075 secG; preprotein translocase subunit SecG
D      JI748_05540 secY; preprotein translocase subunit SecY	K03076 secY; preprotein translocase subunit SecY
D      JI748_15870 ffh; signal recognition particle protein	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D      JI748_15835 ftsY; signal recognition particle-docking protein FtsY	K03110 ftsY; fused signal recognition particle receptor
D      JI748_07435 yajC; preprotein translocase subunit YajC	K03210 yajC; preprotein translocase subunit YajC
D      JI748_01540 yidC; membrane protein insertase YidC	K03217 yidC; YidC/Oxa1 family membrane protein insertase
D      JI748_07470 twin-arginine translocase TatA/TatE family subunit	K03116 tatA; sec-independent protein translocase protein TatA
D      JI748_07465 tatB; twin-arginine translocase subunit TatB	K03117 tatB; sec-independent protein translocase protein TatB
D      JI748_07460 tatC; twin-arginine translocase subunit TatC	K03118 tatC; sec-independent protein translocase protein TatC
C    02042 Bacterial toxins [BR:drh02042]
D      JI748_08480 HlyC/CorC family transporter	K03699 tlyC; magnesium and cobalt exporter, CNNM family
D      JI748_07715 hemolysin III family protein	K11068 hlyIII; hemolysin III
C    02022 Two-component system [BR:drh02022]
D      JI748_13035 two-component sensor histidine kinase	K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D      JI748_02965 phoB; phosphate regulon transcriptional regulator PhoB	K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D      JI748_00220 sensor histidine kinase KdpD	K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D      JI748_00225 response regulator	K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D      JI748_13445 sensor histidine kinase	K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D      JI748_13450 response regulator transcription factor	K14981 chvI; two-component system, OmpR family, response regulator ChvI
D      JI748_03015 response regulator transcription factor	K02483 K02483; two-component system, OmpR family, response regulator
D      JI748_08920 response regulator transcription factor	K02483 K02483; two-component system, OmpR family, response regulator
D      JI748_08975 response regulator transcription factor	K02483 K02483; two-component system, OmpR family, response regulator
D      JI748_16295 response regulator transcription factor	K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D      JI748_06320 PAS domain-containing protein	K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D      JI748_06315 ntrC; nitrogen regulation protein NR(I)	K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D      JI748_06305 PAS domain-containing sensor histidine kinase	K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D      JI748_06300 sigma-54-dependent Fis family transcriptional regulator	K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D      JI748_01575 sensor histidine kinase	K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D      JI748_01570 sigma-54-dependent Fis family transcriptional regulator	K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D      JI748_01225 chemotaxis protein CheA	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      JI748_16665 chemotaxis protein CheA	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      JI748_00985 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_01230 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_16660 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_16705 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_01200 chemotaxis response regulator protein-glutamate methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      JI748_16700 chemotaxis response regulator protein-glutamate methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      JI748_03885 GAF domain-containing protein	K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D      JI748_08825 sensor histidine kinase	K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D      JI748_08905 hypothetical protein	K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D      JI748_09175 PAS domain S-box protein	K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
D      JI748_06060 PleD family two-component system response regulator	K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D      JI748_06055 response regulator	K11443 divK; two-component system, cell cycle response regulator DivK
D      JI748_04595 response regulator	K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D      JI748_01000 response regulator transcription factor	K13584 ctrA; two-component system, cell cycle response regulator CtrA
D      JI748_00470 response regulator	K13589 cpdR; two-component system, cell cycle response regulator CpdR
D      JI748_01040 sigma-54-dependent Fis family transcriptional regulator	K10943 flrC; two-component system, response regulator FlrC
D      JI748_01240 response regulator	K13815 rpfG; two-component system, response regulator RpfG
D      JI748_14275 ActS/PrrB/RegB family redox-sensitive histidine kinase	K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D      JI748_14280 ActR/PrrA/RegA family redox response regulator transcription factor	K15012 regA; two-component system, response regulator RegA
C    02035 Bacterial motility proteins [BR:drh02035]
D      JI748_01225 chemotaxis protein CheA	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      JI748_16665 chemotaxis protein CheA	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      JI748_01210 chemotaxis protein CheW	K03408 cheW; purine-binding chemotaxis protein CheW
D      JI748_01220 chemotaxis protein CheW	K03408 cheW; purine-binding chemotaxis protein CheW
D      JI748_16670 purine-binding chemotaxis protein CheW	K03408 cheW; purine-binding chemotaxis protein CheW
D      JI748_16685 chemotaxis protein CheD	K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D      JI748_01205 protein-glutamate O-methyltransferase	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      JI748_16695 protein-glutamate O-methyltransferase CheR	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      JI748_01200 chemotaxis response regulator protein-glutamate methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      JI748_16700 chemotaxis response regulator protein-glutamate methylesterase	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      JI748_00985 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_01230 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_16660 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_16705 response regulator	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      JI748_01215 MCP four helix bundle domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_04860 PAS domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16175 cache domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16710 HAMP domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16715 Cache 3/Cache 2 fusion domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16720 HAMP domain-containing protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_16725 PAS domain S-box protein	K03406 mcp; methyl-accepting chemotaxis protein
D      JI748_01050 hypothetical protein	K02411 fliH; flagellar assembly protein FliH
D      JI748_01005 fliI; flagellar protein export ATPase FliI	K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D      JI748_01010 fliJ; flagellar export protein FliJ	K02413 fliJ; flagellar protein FliJ
D      JI748_04555 fliP; flagellar type III secretion system pore protein FliP	K02419 fliP; flagellar biosynthesis protein FliP
D      JI748_04580 fliQ; flagellar biosynthesis protein FliQ	K02420 fliQ; flagellar biosynthesis protein FliQ
D      JI748_04585 fliR; flagellar type III secretion system protein FliR	K02421 fliR; flagellar biosynthesis protein FliR
D      JI748_01035 flhA; flagellar biosynthesis protein FlhA	K02400 flhA; flagellar biosynthesis protein FlhA
D      JI748_04590 flhB; flagellar biosynthesis protein FlhB	K02401 flhB; flagellar biosynthesis protein FlhB
D      JI748_01055 fliG; flagellar motor switch protein FliG	K02410 fliG; flagellar motor switch protein FliG
D      JI748_04535 fliM; flagellar motor switch protein FliM	K02416 fliM; flagellar motor switch protein FliM
D      JI748_01045 fliN; flagellar motor switch protein FliN	K02417 fliN; flagellar motor switch protein FliN
D      JI748_05670 FliM/FliN family flagellar motor switch protein	K02417 fliN; flagellar motor switch protein FliN
D      JI748_01060 fliF; flagellar M-ring protein FliF	K02409 fliF; flagellar M-ring protein FliF
D      JI748_04475 flagellar basal body P-ring protein FlgI	K02394 flgI; flagellar P-ring protein FlgI
D      JI748_04515 flgA; flagellar basal body P-ring formation protein FlgA	K02386 flgA; flagellar basal body P-ring formation protein FlgA
D      JI748_04510 flagellar basal body L-ring protein FlgH	K02393 flgH; flagellar L-ring protein FlgH
D      JI748_04530 flagellar basal body-associated FliL family protein	K02415 fliL; flagellar protein FliL
D      JI748_04575 fliE; flagellar hook-basal body complex protein FliE	K02408 fliE; flagellar hook-basal body complex protein FliE
D      JI748_04565 flgB; flagellar basal body rod protein FlgB	K02387 flgB; flagellar basal-body rod protein FlgB
D      JI748_04570 flgC; flagellar basal body rod protein FlgC	K02388 flgC; flagellar basal-body rod protein FlgC
D      JI748_01075 flagellar hook assembly protein FlgD	K02389 flgD; flagellar basal-body rod modification protein FlgD
D      JI748_04525 flgF; flagellar basal-body rod protein FlgF	K02391 flgF; flagellar basal-body rod protein FlgF
D      JI748_04520 flgG; flagellar basal-body rod protein FlgG	K02392 flgG; flagellar basal-body rod protein FlgG
D      JI748_04470 rod-binding protein	K02395 flgJ; peptidoglycan hydrolase FlgJ
D      JI748_04430 flagellar hook-basal body complex protein	K02390 flgE; flagellar hook protein FlgE
D      JI748_04435 flgK; flagellar hook-associated protein FlgK	K02396 flgK; flagellar hook-associated protein 1
D      JI748_04440 hypothetical protein	K02397 flgL; flagellar hook-associated protein 3 FlgL
D      JI748_02780 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_03405 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_03485 motA; flagellar motor stator protein MotA	K02556 motA; chemotaxis protein MotA
D      JI748_01325 peptidoglycan -binding protein	K02557 motB; chemotaxis protein MotB
D      JI748_02785 OmpA family protein	K02557 motB; chemotaxis protein MotB
D      JI748_01040 sigma-54-dependent Fis family transcriptional regulator	K10943 flrC; two-component system, response regulator FlrC
D      JI748_09825 amino acid ABC transporter substrate-binding protein	K02424 tcyA; L-cystine transport system substrate-binding protein
D      JI748_04445 flaF; flagellar biosynthesis regulator FlaF	K06602 flaF; flagellar biosynthesis activator protein FlaF
D      JI748_04450 flbT; flagellar biosynthesis repressor FlbT	K06601 flbT; flagellar biosynthesis repressor protein FlbT
D      JI748_12445 Flp family type IVb pilin	K02651 flp; pilus assembly protein Flp/PilA
D      JI748_15590 Flp family type IVb pilin	K02651 flp; pilus assembly protein Flp/PilA
D      JI748_17025 Flp family type IVb pilin	K02651 flp; pilus assembly protein Flp/PilA
D      JI748_12440 prepilin peptidase	K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D      JI748_12435 cpaB; Flp pilus assembly protein CpaB	K02279 cpaB; pilus assembly protein CpaB
D      JI748_12430 type II and III secretion system protein family protein	K02280 cpaC; pilus assembly protein CpaC
D      JI748_12425 AAA family ATPase	K02282 cpaE; pilus assembly protein CpaE
D      JI748_12420 CpaF family protein	K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C    03037 Cilium and associated proteins
C    04812 Cytoskeleton proteins [BR:drh04812]
D      JI748_04025 ftsZ; cell division protein FtsZ	K03531 ftsZ; cell division protein FtsZ
D      JI748_04015 ftsA; cell division protein FtsA	K03590 ftsA; cell division protein FtsA
D      JI748_07400 AAA family ATPase	K03496 parA; chromosome partitioning protein
D      JI748_15485 ParA family protein	K03496 parA; chromosome partitioning protein
D      JI748_14940 ParB/RepB/Spo0J family partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D      JI748_15490 ParB/RepB/Spo0J family partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C    04147 Exosome [BR:drh04147]
D      JI748_01350 fructose-bisphosphate aldolase class I	K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D      JI748_06215 eno; phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      JI748_01390 gap; type I glyceraldehyde-3-phosphate dehydrogenase	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      JI748_01355 phosphoglycerate kinase	K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D      JI748_00665 pyk; pyruvate kinase	K00873 PK; pyruvate kinase [EC:2.7.1.40]
D      JI748_06105 dipeptidase	K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D      JI748_10605 groL; chaperonin GroEL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D      JI748_15280 dnaK; molecular chaperone DnaK	K04043 dnaK; molecular chaperone DnaK
D      JI748_06770 pgi; glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      JI748_07015 S9 family peptidase	K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D      JI748_16550 SMP-30/gluconolactonase/LRE family protein	K01053 gnl; gluconolactonase [EC:3.1.1.17]
D      JI748_08535 guaB; IMP dehydrogenase	K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D      JI748_05430 tuf; elongation factor Tu	K02358 tuf; elongation factor Tu
D      JI748_06030 HIT family protein	K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D      JI748_00585 long-chain fatty acid--CoA ligase	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      JI748_00600 acetyl-CoA C-acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      JI748_13400 adenosylhomocysteinase	K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D      JI748_05545 adenylate kinase	K00939 adk; adenylate kinase [EC:2.7.4.3]
D      JI748_02310 adenine phosphoribosyltransferase	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      JI748_16935 argH; argininosuccinate lyase	K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D      JI748_15685 argininosuccinate synthase	K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D      JI748_13685 hydA; dihydropyrimidinase	K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D      JI748_08655 class 1 fructose-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      JI748_03675 glgB; 1,4-alpha-glucan branching protein GlgB	K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D      JI748_12985 malto-oligosyltrehalose trehalohydrolase	K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D      JI748_13175 treZ; malto-oligosyltrehalose trehalohydrolase	K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D      JI748_00120 glpK; glycerol kinase GlpK	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      JI748_10775 glpK; glycerol kinase GlpK	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      JI748_07220 glnA; type I glutamate--ammonia ligase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      JI748_08095 hemB; porphobilinogen synthase	K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D      JI748_00890 phosphoglycerate dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      JI748_11635 C-terminal binding protein	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      JI748_15565 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D      JI748_01800 dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_06355 lpdA; dihydrolipoyl dehydrogenase	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      JI748_10720 electron transfer flavoprotein subunit alpha/FixB family protein	K03522 fixB; electron transfer flavoprotein alpha subunit
D      JI748_10425 zwf; glucose-6-phosphate dehydrogenase	K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D      JI748_06190 triose-phosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D      JI748_15350 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C    02048 Prokaryotic defense system [BR:drh02048]
D      JI748_10070 site-specific DNA-methyltransferase	K13581 ccrM; modification methylase [EC:2.1.1.72]
D      JI748_06690 AAA family ATPase	K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D      JI748_06695 calmodulin-binding protein	K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D      JI748_10020 type II toxin-antitoxin system PemK/MazF family toxin	K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D      JI748_00570 Txe/YoeB family addiction module toxin	K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D      JI748_00575 type II toxin-antitoxin system prevent-host-death family antitoxin	K19159 yefM; antitoxin YefM
D      JI748_00615 type II toxin-antitoxin system RelE/ParE family toxin	K19092 parE1_3_4; toxin ParE1/3/4
D      JI748_01415 type II toxin-antitoxin system RelE/ParE family toxin	K19092 parE1_3_4; toxin ParE1/3/4
D      JI748_16140 type II toxin-antitoxin system RelE/ParE family toxin	K19092 parE1_3_4; toxin ParE1/3/4
D      JI748_17000 type II toxin-antitoxin system RelE/ParE family toxin	K19092 parE1_3_4; toxin ParE1/3/4
D      JI748_01410 type II toxin-antitoxin system ParD family antitoxin	K07746 parD1_3_4; antitoxin ParD1/3/4
D      JI748_04670 type II toxin-antitoxin system ParD family antitoxin	K07746 parD1_3_4; antitoxin ParD1/3/4
D      JI748_16145 type II toxin-antitoxin system ParD family antitoxin	K07746 parD1_3_4; antitoxin ParD1/3/4
D      JI748_16995 type II toxin-antitoxin system ParD family antitoxin	K07746 parD1_3_4; antitoxin ParD1/3/4
D      JI748_08695 type II toxin-antitoxin system death-on-curing family toxin	K07341 doc; death on curing protein
D      JI748_10405 type II toxin-antitoxin system RelE/ParE family toxin	K07334 higB-1; toxin HigB-1
D      JI748_13760 type II toxin-antitoxin system RelE/ParE family toxin	K07334 higB-1; toxin HigB-1
D      JI748_10410 HigA family addiction module antidote protein	K21498 higA-1; antitoxin HigA-1
D      JI748_13755 HigA family addiction module antidote protein	K21498 higA-1; antitoxin HigA-1
D      JI748_08500 type II toxin-antitoxin system VapC family toxin	K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D      JI748_08495 antitoxin	K18829 mvpT; antitoxin VapB
D      JI748_04025 ftsZ; cell division protein FtsZ	K03531 ftsZ; cell division protein FtsZ
D      JI748_08120 parC; DNA topoisomerase IV subunit A	K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D      JI748_07255 parE; DNA topoisomerase IV subunit B	K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D      JI748_05840 glutamate--tRNA ligase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      JI748_08755 glutamate--tRNA ligase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      JI748_06725 succinate dehydrogenase assembly factor 2	K09159 cptB; antitoxin CptB
D      JI748_07310 aminotransferase class V-fold PLP-dependent enzyme	K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C    04030 G protein-coupled receptors
C    04050 Cytokine receptors
C    04054 Pattern recognition receptors
C    03310 Nuclear receptors
C    04040 Ion channels
C    04031 GTP-binding proteins
C    04052 Cytokines and neuropeptides
C    04515 Cell adhesion molecules
C    04090 CD molecules [BR:drh04090]
D      JI748_07015 S9 family peptidase	K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C    01504 Antimicrobial resistance genes [BR:drh01504]
D      JI748_05895 aminoglycoside 3'-phosphotransferase	K19300 aph3-II; aminoglycoside 3'-phosphotransferase II [EC:2.7.1.95]
D      JI748_10825 phosphotransferase	K04343 strB; streptomycin 6-kinase [EC:2.7.1.72]
D      JI748_04940 TCR/Tet family MFS transporter	K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D      JI748_07200 TCR/Tet family MFS transporter	K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D      JI748_13415 tet; Tet(A)/Tet(B)/Tet(C) family tetracycline efflux MFS transporter	K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D      JI748_06545 MFS transporter	K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D      JI748_15690 chloramphenicol phosphotransferase	K18554 cpt; chloramphenicol 3-O phosphotransferase [EC:2.7.1.-]
D      JI748_03475 cueR; Cu(I)-responsive transcriptional regulator	K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D      JI748_09380 cueR; Cu(I)-responsive transcriptional regulator	K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D      JI748_07535 TolC family outer membrane protein	K12340 tolC; outer membrane protein
C    00535 Proteoglycans
C    00536 Glycosaminoglycan binding proteins
C    00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:drh00537]
D      JI748_06105 dipeptidase	K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C    04091 Lectins
C    04990 Domain-containing proteins not elsewhere classified
B
B  09185 Viral protein families
C    03200 Viral proteins
C    03210 Viral fusion proteins
B
B  09184 RNA family
C    03100 Non-coding RNAs [BR:drh03100]
D      JI748_15995 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      JI748_11895 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      JI748_07555 tRNA-Cys	K14222 tRNA-Cys; tRNA Cys
D      JI748_12650 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      JI748_05325 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      JI748_10660 tRNA-His	K14226 tRNA-His; tRNA His
D      JI748_17305 tRNA-Ile	K14227 tRNA-Ile; tRNA Ile
D      JI748_07230 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      JI748_04280 tRNA-Lys	K14229 tRNA-Lys; tRNA Lys
D      JI748_01155 tRNA-Met	K14230 tRNA-Met; tRNA Met
D      JI748_11900 tRNA-Phe	K14231 tRNA-Phe; tRNA Phe
D      JI748_07965 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      JI748_09750 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      JI748_07640 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      JI748_05255 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      JI748_05335 tRNA-Trp	K14235 tRNA-Trp; tRNA Trp
D      JI748_05320 tRNA-Tyr	K14236 tRNA-Tyr; tRNA Tyr
D      JI748_17300 16S ribosomal RNA	K01977 16SrRNA; 16S ribosomal RNA
D      JI748_17315 23S ribosomal RNA	K01980 23SrRNA; 23S ribosomal RNA
D      JI748_17320 rrf; 5S ribosomal RNA	K01985 5SrRNA; 5S ribosomal RNA
D      JI748_12305 ffs; signal recognition particle sRNA small type	K01983 ffs; SRP RNA
D      JI748_03910 rnpB; RNase P RNA component class A	K01978 rnpB; M1 RNA
D      JI748_04100 ssrA; transfer-messenger RNA	K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B  09191 Unclassified: metabolism
C    99980 Enzymes with EC numbers
D      JI748_04920 SDR family oxidoreductase	K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D      JI748_08235 hisD; histidinol dehydrogenase	K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308]
D      JI748_08575 hisD; histidinol dehydrogenase	K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308]
D      JI748_05405 aldo/keto reductase	K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D      JI748_10995 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA	K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D      JI748_13745 aldo/keto reductase	K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D      JI748_02750 PQQ-dependent sugar dehydrogenase	K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D      JI748_01620 fgd; glucose-6-phosphate dehydrogenase (coenzyme-F420)	K15510 fgd1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2]
D      JI748_07000 aldo/keto reductase	K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D      JI748_07125 indolepyruvate ferredoxin oxidoreductase subunit alpha	K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D      JI748_07130 indolepyruvate oxidoreductase subunit beta family protein	K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D      JI748_16490 (2Fe-2S)-binding protein	K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D      JI748_16495 xanthine dehydrogenase family protein molybdopterin-binding subunit	K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D      JI748_11645 NAD/NADP octopine/nopaline dehydrogenase family protein	K04940 odh; opine dehydrogenase [EC:1.5.1.28]
D      JI748_10005 electron transfer flavoprotein-ubiquinone oxidoreductase	K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D      JI748_06700 quinone oxidoreductase	K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D      JI748_00660 NAD(P)H-dependent oxidoreductase	K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D      JI748_06930 msrA; peptide-methionine (S)-S-oxide reductase MsrA	K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D      JI748_13640 msrA; peptide-methionine (S)-S-oxide reductase MsrA	K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D      JI748_00495 msrB; peptide-methionine (R)-S-oxide reductase MsrB	K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D      JI748_01560 msrB; peptide-methionine (R)-S-oxide reductase MsrB	K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D      JI748_02765 yghU; glutathione-dependent disulfide-bond oxidoreductase	K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D      JI748_16310 glutathione S-transferase N-terminal domain-containing protein	K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D      JI748_02255 glutathione S-transferase family protein	K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D      JI748_13650 manganese catalase family protein	K07217 ydbD; manganese catalase [EC:1.11.1.6]
D      JI748_07330 peroxiredoxin	K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D      JI748_13870 peroxiredoxin	K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D      JI748_02810 organic hydroperoxide resistance protein	K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D      JI748_03535 arsC; arsenate reductase (glutaredoxin)	K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D      JI748_03550 arsenate reductase ArsC	K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D      JI748_07540 methyltransferase domain-containing protein	K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D      JI748_07790 class I SAM-dependent methyltransferase	K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D      JI748_02760 class I SAM-dependent RNA methyltransferase	K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
D      JI748_14160 arylamine N-acetyltransferase	K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118]
D      JI748_14510 lnt; apolipoprotein N-acyltransferase	K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D      JI748_11755 3-keto-5-aminohexanoate cleavage protein	K27837 cdhC; 3-dehydrocarnitine:acetyl-CoA trimethylamine transferase [EC:2.3.1.317]
D      JI748_06505 GNAT family N-acetyltransferase	K03829 yedL; putative acetyltransferase [EC:2.3.1.-]
D      JI748_05900 leucyl/phenylalanyl-tRNA--protein transferase	K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D      JI748_08110 arginyltransferase	K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D      JI748_02395 prolipoprotein diacylglyceryl transferase	K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D      JI748_03090 FAD:protein FMN transferase	K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D      JI748_10960 four-carbon acid sugar kinase family protein	K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D      JI748_08910 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D      JI748_13470 YdiU family protein	K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D      JI748_03105 carboxylesterase family protein	K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D      JI748_01470 ybgC; tol-pal system-associated acyl-CoA thioesterase	K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D      JI748_06275 TatD family hydrolase	K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D      JI748_12745 endoglucanase	K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D      JI748_05990 D-alanyl-D-alanine carboxypeptidase	K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D      JI748_07390 D-alanyl-D-alanine carboxypeptidase	K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D      JI748_12340 peptide deformylase	K01462 PDF; peptide deformylase [EC:3.5.1.88]
D      JI748_17190 carbon-nitrogen hydrolase family protein	K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D      JI748_07145 cyclase family protein	K01475 E3.5.2.20; isatin hydrolase [EC:3.5.2.20]
D      JI748_00295 RidA family protein	K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D      JI748_04800 serine hydrolase family protein	K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D      JI748_14660 alpha/beta hydrolase	K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D      JI748_06145 uvsE; UV DNA damage repair endonuclease UvsE	K13281 uvsE; UV DNA damage endonuclease [EC:3.-.-.-]
D      JI748_00405 altronate dehydratase	K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D      JI748_12900 NAD(P)H-hydrate dehydratase	K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136]
D      JI748_07205 NAD(P)H-hydrate epimerase	K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D      JI748_00395 ribose ABC transporter	K02431 fucU; L-fucose mutarotase [EC:5.1.3.29]
D      JI748_13210 sugar phosphate isomerase/epimerase	K18910 dpe; D-psicose/D-tagatose/L-ribulose 3-epimerase [EC:5.1.3.30 5.1.3.31]
D      JI748_09285 rhaM; L-rhamnose mutarotase	K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D      JI748_11640 L-rhamnose mutarotase	K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D      JI748_06810 peptidylprolyl isomerase	K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D      JI748_08660 AGE family epimerase/isomerase	K18479 yihS; sulfoquinovose isomerase [EC:5.3.1.31]
D      JI748_03310 cadA; cadmium-translocating P-type ATPase	K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C    99981 Carbohydrate metabolism
C    99982 Energy metabolism
D      JI748_17155 ferredoxin family protein	K05524 fdxA; ferredoxin
D      JI748_10725 electron transfer flavoprotein subunit beta/FixA family protein	K03521 fixA; electron transfer flavoprotein beta subunit
C    99983 Lipid metabolism
C    99984 Nucleotide metabolism
D      JI748_16505 nrdI; class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	K03647 nrdI; protein involved in ribonucleotide reduction
C    99985 Amino acid metabolism
D      JI748_06210 VOC family protein	K08234 yaeR; glyoxylase I family protein
D      JI748_08815 VOC family protein	K08234 yaeR; glyoxylase I family protein
D      JI748_15505 YggS family pyridoxal phosphate-dependent enzyme	K06997 yggS; PLP dependent protein
C    99986 Glycan metabolism
D      JI748_17210 glycosyltransferase family 25 protein	K07270 K07270; glycosyl transferase, family 25
D      JI748_12750 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	K20541 bcsB; cellulose synthase operon protein B
C    99987 Cofactor metabolism
D      JI748_10480 cobW; cobalamin biosynthesis protein CobW	K02234 cobW; cobalamin biosynthesis protein CobW
D      JI748_15790 heme biosynthesis protein HemY	K02498 hemY; HemY protein
D      JI748_14205 ubiB; 2-polyprenylphenol 6-hydroxylase	K03688 ubiB; ubiquinone biosynthesis protein
D      JI748_06340 type II toxin-antitoxin system RatA family toxin	K18588 COQ10; coenzyme Q-binding protein COQ10
C    99988 Secondary metabolism
D      JI748_16350 NAD(P)H-dependent oxidoreductase	K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C    99999 Others
D      JI748_01180 ring-cleaving dioxygenase	K15975 K15975; glyoxalase family protein
D      JI748_05655 DoxX family protein	K15977 K15977; putative oxidoreductase
D      JI748_13825 DoxX family membrane protein	K15977 K15977; putative oxidoreductase
D      JI748_00275 alpha/beta hydrolase	K06999 K06999; phospholipase/carboxylesterase
D      JI748_16985 phospholipase	K06999 K06999; phospholipase/carboxylesterase
B
B  09192 Unclassified: genetic information processing
C    99973 Transcription
D      JI748_01375 cold-shock protein	K03704 cspA; cold shock protein
D      JI748_02705 cold-shock protein	K03704 cspA; cold shock protein
D      JI748_04295 cold-shock protein	K03704 cspA; cold shock protein
D      JI748_07725 CspA family cold shock protein	K03704 cspA; cold shock protein
D      JI748_14075 P-II family nitrogen regulator	K04752 glnK; nitrogen regulatory protein P-II 2
C    99974 Translation
D      JI748_00555 ligase-associated DNA damage response exonuclease	K07577 K07577; putative mRNA 3-end processing factor
C    99975 Protein processing
D      JI748_06000 clpS; ATP-dependent Clp protease adapter ClpS	K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D      JI748_07235 trigger factor	K03545 tig; trigger factor
D      JI748_03725 urease accessory protein UreE	K03187 ureE; urease accessory protein
D      JI748_03720 urease accessory protein UreF	K03188 ureF; urease accessory protein
D      JI748_03710 ureG; urease accessory protein UreG	K03189 ureG; urease accessory protein
D      JI748_03770 urease accessory protein UreD	K03190 ureD; urease accessory protein
D      JI748_03760 HupE/UreJ family protein	K03192 ureJ; urease accessory protein
D      JI748_08170 smpB; SsrA-binding protein SmpB	K03664 smpB; SsrA-binding protein
D      JI748_13190 nrdH; glutaredoxin-like protein NrdH	K06191 nrdH; glutaredoxin-like protein NrdH
D      JI748_13845 SelT/SelW/SelH family protein	K07401 K07401; selenoprotein W-related protein
D      JI748_02160 xdhC; xanthine dehydrogenase accessory protein XdhC	K07402 xdhC; xanthine dehydrogenase accessory factor
D      JI748_16450 XdhC family protein	K07402 xdhC; xanthine dehydrogenase accessory factor
C    99976 Replication and repair
D      JI748_00005 hypothetical protein	K07454 K07454; putative restriction endonuclease
D      JI748_17330 hypothetical protein	K07454 K07454; putative restriction endonuclease
D      JI748_04830 radC; DNA repair protein RadC	K03630 radC; DNA repair protein RadC
D      JI748_12335 DNA recombination protein RmuC	K09760 rmuC; DNA recombination protein RmuC
D      JI748_15230 YraN family protein	K07460 yraN; putative endonuclease
D      JI748_06090 dprA; DNA-protecting protein DprA	K04096 smf; DNA processing protein
D      JI748_05585 replication-associated recombination protein A	K07478 ycaJ; putative ATPase
D      JI748_11425 IS3 family transposase	K07497 K07497; putative transposase
D      JI748_11430 IS3 family transposase	K07497 K07497; putative transposase
C    99979 Viral proteins
C    99998 Others
D      JI748_12315 YbaB/EbfC family nucleoid-associated protein	K09747 ebfC; nucleoid-associated protein EbfC
B
B  09193 Unclassified: signaling and cellular processes
C    99977 Transport
D      JI748_01505 efflux RND transporter permease subunit	K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D      JI748_01970 efflux RND transporter permease subunit	K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
C    99978 Cell growth
D      JI748_15830 septation protein A	K06190 ispZ; intracellular septation protein
D      JI748_16200 peptidoglycan DD-metalloendopeptidase family protein	K22719 envC; murein hydrolase activator
C    99993 Cell motility
C    99995 Signaling proteins
D      JI748_15700 typA; translational GTPase TypA	K06207 typA; GTP-binding protein
D      JI748_13610 cupin domain-containing protein	K07167 chrR; putative transcriptional regulator
D      JI748_14375 PhoH family protein	K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D      JI748_02495 hypothetical protein	K07184 ygiM; SH3 domain protein
D      JI748_13250 circadian clock KaiB family protein	K08481 kaiB; circadian clock protein KaiB
D      JI748_09590 circadian clock protein KaiC	K08482 kaiC; circadian clock protein KaiC
D      JI748_13245 kaiC; circadian clock protein KaiC	K08482 kaiC; circadian clock protein KaiC
C    99992 Structural proteins
D      JI748_15180 glycoside hydrolase family 25 protein	K07273 acm; lysozyme
D      JI748_15190 NfeD family protein	K07340 ybbJ; inner membrane protein
D      JI748_08940 ccmE; cytochrome c maturation protein CcmE	K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D      JI748_08930 cytochrome c-type biogenesis protein CcmH	K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D      JI748_08945 ccmI; c-type cytochrome biogenesis protein CcmI	K02200 ccmH; cytochrome c-type biogenesis protein CcmH
C    99994 Others
D      JI748_02970 phoU; phosphate signaling complex protein PhoU	K02039 phoU; phosphate transport system protein
D      JI748_15930 glucan biosynthesis protein G	K03670 mdoG; periplasmic glucans biosynthesis protein
D      JI748_13130 copper homeostasis protein CutC	K06201 cutC; copper homeostasis protein
D      JI748_14000 phnK; phosphonate C-P lyase system protein PhnK	K05781 phnK; putative phosphonate transport system ATP-binding protein
D      JI748_09730 hemin-degrading factor	K07225 hmuS; putative hemin transport protein
D      JI748_16390 peptidase	K07231 K07231; putative iron-regulated protein
B
B  09194 Poorly characterized
C    99996 General function prediction only
D      JI748_08460 CvpA family protein	K03558 cvpA; membrane protein required for colicin V production
D      JI748_08630 group III truncated hemoglobin	K06886 glbN; hemoglobin
D      JI748_10290 patatin-like phospholipase family protein	K07001 K07001; NTE family protein
D      JI748_01270 pyrimidine 5'-nucleotidase	K07025 K07025; putative hydrolase of the HAD superfamily
D      JI748_14640 HAD-IA family hydrolase	K07025 K07025; putative hydrolase of the HAD superfamily
D      JI748_07305 sufB; Fe-S cluster assembly protein SufB	K09014 sufB; Fe-S cluster assembly protein SufB
D      JI748_07295 sufD; Fe-S cluster assembly protein SufD	K09015 sufD; Fe-S cluster assembly protein SufD
D      JI748_02665 YihY/virulence factor BrkB family protein	K07058 K07058; membrane protein
D      JI748_12910 YihY/virulence factor BrkB family protein	K07058 K07058; membrane protein
D      JI748_15425 FxsA family protein	K07113 fxsA; UPF0716 protein FxsA
D      JI748_09185 SufE family protein	K02426 sufE; cysteine desulfuration protein SufE
D      JI748_13750 rhodanese-related sulfurtransferase	K07146 K07146; UPF0176 protein
D      JI748_05295 VOC family protein	K04750 phnB; PhnB protein
D      JI748_03530 arsH; arsenical resistance protein ArsH	K11811 arsH; arsenical resistance protein ArsH
D      JI748_09970 LemA family protein	K03744 lemA; LemA protein
D      JI748_00770 SlyX family protein	K03745 slyX; SlyX protein
D      JI748_13860 CreA family protein	K05805 creA; CreA protein
D      JI748_15330 DUF2214 family protein	K08983 K08983; putative membrane protein
D      JI748_15915 DUF1304 domain-containing protein	K08987 K08987; putative membrane protein
D      JI748_04410 TIGR01620 family protein	K08990 ycjF; putative membrane protein
D      JI748_02500 DUF4142 domain-containing protein	K08995 K08995; putative membrane protein
D      JI748_02115 META domain-containing protein	K09914 K09914; putative lipoprotein
C    99997 Function unknown
D      JI748_00755 alpha/beta hydrolase	K06889 K06889; uncharacterized protein
D      JI748_15640 Bax inhibitor-1/YccA family protein	K06890 K06890; uncharacterized protein
D      JI748_04415 YcjX family protein	K06918 K06918; uncharacterized protein
D      JI748_07440 ATP-binding protein	K06923 K06923; uncharacterized protein
D      JI748_02530 ATP-binding protein	K06926 K06926; uncharacterized protein
D      JI748_12570 pdeM; ligase-associated DNA damage response endonuclease PdeM	K06953 K06953; uncharacterized protein
D      JI748_00285 N-acetyltransferase	K06975 K06975; uncharacterized protein
D      JI748_02200 CocE/NonD family hydrolase	K06978 K06978; uncharacterized protein
D      JI748_11255 VOC family protein	K06991 K06991; uncharacterized protein
D      JI748_17285 VOC family protein	K06996 K06996; uncharacterized protein
D      JI748_05725 MMPL family transporter	K07003 K07003; uncharacterized protein
D      JI748_00490 pyridoxamine 5'-phosphate oxidase family protein	K07006 K07006; uncharacterized protein
D      JI748_07315 alpha/beta hydrolase	K07018 K07018; uncharacterized protein
D      JI748_12545 VOC family protein	K07032 K07032; uncharacterized protein
D      JI748_15300 VOC family protein	K07032 K07032; uncharacterized protein
D      JI748_02840 zinc metallopeptidase	K07054 K07054; uncharacterized protein
D      JI748_00800 sulfite exporter TauE/SafE family protein	K07090 K07090; uncharacterized protein
D      JI748_08285 sulfite exporter TauE/SafE family protein	K07090 K07090; uncharacterized protein
D      JI748_10615 TSUP family transporter	K07090 K07090; uncharacterized protein
D      JI748_12560 sulfite exporter TauE/SafE family protein	K07090 K07090; uncharacterized protein
D      JI748_15040 sulfite exporter TauE/SafE family protein	K07090 K07090; uncharacterized protein
D      JI748_12090 YeeE/YedE family protein	K07112 K07112; uncharacterized protein
D      JI748_15025 YeeE/YedE family protein	K07112 K07112; uncharacterized protein
D      JI748_10735 AbrB family transcriptional regulator	K07120 K07120; uncharacterized protein
D      JI748_01340 sel1 repeat family protein	K07126 K07126; uncharacterized protein
D      JI748_14035 SEL1-like repeat protein	K07126 K07126; uncharacterized protein
D      JI748_16300 MOSC N-terminal beta barrel domain-containing protein	K07140 K07140; MOSC domain-containing protein
D      JI748_14060 LON peptidase substrate-binding domain-containing protein	K07157 K07157; uncharacterized protein
D      JI748_05015 yidD; membrane protein insertion efficiency factor YidD	K08998 K08998; uncharacterized protein
D      JI748_07720 DUF192 domain-containing protein	K09005 K09005; uncharacterized protein
D      JI748_02855 GatB/YqeY domain-containing protein	K09117 K09117; uncharacterized protein
D      JI748_09120 YcgN family cysteine cluster protein	K09160 K09160; uncharacterized protein
D      JI748_02745 YqcI/YcgG family protein	K09190 K09190; uncharacterized protein
D      JI748_12525 carbon monoxide dehydrogenase subunit G	K09386 K09386; uncharacterized protein
D      JI748_13595 DUF1365 domain-containing protein	K09701 K09701; uncharacterized protein
D      JI748_08330 cupin domain-containing protein	K09705 K09705; uncharacterized protein
D      JI748_05280 YaiI/YqxD family protein	K09768 K09768; uncharacterized protein
D      JI748_17100 DUF378 domain-containing protein	K09779 K09779; uncharacterized protein
D      JI748_15820 YciI family protein	K09780 K09780; uncharacterized protein
D      JI748_09955 DUF808 domain-containing protein	K09781 K09781; uncharacterized protein
D      JI748_14065 Trm112 family protein	K09791 K09791; uncharacterized protein
D      JI748_15215 DUF459 domain-containing protein	K09795 K09795; uncharacterized protein
D      JI748_13515 SIMPL domain-containing protein	K09797 K09797; uncharacterized protein
D      JI748_16190 divergent polysaccharide deacetylase family protein	K09798 K09798; uncharacterized protein
D      JI748_02370 BrnT family toxin	K09803 K09803; uncharacterized protein
D      JI748_07880 BrnT family toxin	K09803 K09803; uncharacterized protein
D      JI748_15285 BrnT family toxin	K09803 K09803; uncharacterized protein
D      JI748_15880 BrnT family toxin	K09803 K09803; uncharacterized protein
D      JI748_02940 SIMPL domain-containing protein	K09807 K09807; uncharacterized protein
D      JI748_11905 yacG; DNA gyrase inhibitor YacG	K09862 K09862; uncharacterized protein
D      JI748_06035 N-acetyltransferase	K09919 K09919; uncharacterized protein
D      JI748_10500 DMT family protein	K09922 K09922; uncharacterized protein
D      JI748_08785 DUF2059 domain-containing protein	K09924 K09924; uncharacterized protein
D      JI748_14475 YcaQ family DNA glycosylase	K09927 K09927; uncharacterized protein
D      JI748_06580 DUF2076 domain-containing protein	K09945 K09945; uncharacterized protein
D      JI748_16405 DUF1513 domain-containing protein	K09947 K09947; uncharacterized protein
D      JI748_11030 glycoside hydrolase family 127 protein	K09955 K09955; uncharacterized protein
D      JI748_01385 putative glycolipid-binding domain-containing protein	K09957 K09957; uncharacterized protein
D      JI748_04600 DUF2237 domain-containing protein	K09966 K09966; uncharacterized protein
D      JI748_02740 urea carboxylase-associated family protein	K09967 K09967; uncharacterized protein
D      JI748_07650 TraB/GumN family protein	K09973 K09973; uncharacterized protein
D      JI748_06605 DUF1993 domain-containing protein	K09983 K09983; uncharacterized protein
D      JI748_04095 hypothetical protein	K09985 K09985; uncharacterized protein
D      JI748_00805 DUF1013 domain-containing protein	K09987 K09987; uncharacterized protein
D      JI748_07530 DUF2497 domain-containing protein	K09991 K09991; uncharacterized protein
D      JI748_02060 ThuA domain-containing protein	K09992 K09992; uncharacterized protein
D      JI748_16400 peptidase M75, Imelysin	K07338 K07338; uncharacterized protein
D      JI748_14630 RNA-binding protein	K07742 ylxR; uncharacterized protein
!
#<hr>
#[ <a href="/kegg/ko.html">KO</a> | <a href="/kegg/brite.html">BRITE</a> | <a href="/kegg/kegg2.html">KEGG2</a> | <a href="/kegg/">KEGG</a> ]<br>
#Last updated: September 21, 2024