+E Transcription factors KO
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Transcription Factors - Dinoroseobacter shibae
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D Dshi_1491 transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Dshi_4172 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D Dshi_2282 putative transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D Dshi_3024 ada; ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Dshi_3631 transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D Dshi_1525 HTH-type transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D Dshi_3068 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Dshi_2079 HTH-type transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D Dshi_0995 transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D Dshi_0727 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Dshi_2523 putative hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Dshi_3802 hydrogen peroxide sensing transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Dshi_0711 transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Dshi_1431 transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Dshi_3715 transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Dshi_1440 transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D Dshi_2990 HTH-type transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D Dshi_0631 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D Dshi_2008 putative glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D Dshi_1653 HTH-type transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Dshi_2029 HTH-type transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Dshi_4217 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D Dshi_3322 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D Dshi_0694 transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D Dshi_2758 transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D Dshi_3026 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Dshi_1972 putative pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Dshi_4185 transcriptional regulator, GntR family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D Dshi_1835 putative transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Dshi_2044 HTH-type transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Dshi_0609 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Dshi_0960 transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
C TetR/AcrR family
D Dshi_1365 transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D Dshi_1874 putative regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
C Lrp/AsnC family
D Dshi_0245 asnC; transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Dshi_2477 putative leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Dshi_2394 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Dshi_1156 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D Dshi_2395 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D Dshi_1819 putative transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D Dshi_0311 luxR1; transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D Dshi_1815 putative transcriptional regulator K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR
D Dshi_2852 transcriptional regulator K25873 raiR; LuxR family transcriptional regulator, quorum-sensing system regulator RaiR
C MarR family
D Dshi_0758 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D Dshi_3790 heavy metal-dependent transcription regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Dshi_1260 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Dshi_4066 heavy metal-dependent transcription regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Dshi_0776 cobalamin B12-binding domain protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D Dshi_3532 ppaA; regulatory protein PpaA K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D Dshi_2142 putative ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Dshi_1703 putative zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D Dshi_1011 ferric uptake regulator K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D Dshi_0886 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Dshi_0800 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
C CRP/FNR family
D Dshi_3110 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Dshi_2521 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Dshi_2528 putative transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Dshi_0660 fixK; transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Dshi_0447 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Dshi_3764 cyclic nucleotide-binding protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D Dshi_4040 cyclic nucleotide-binding protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D Dshi_3189 transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D Dshi_3191 dnr; transcriptional regulator Dnr K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D Dshi_1633 iscR; HTH-type transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Dshi_2306 putative transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D Dshi_0587 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Dshi_1253 transcriptional regulator K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4]
C XRE family
D Dshi_0716 transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D Dshi_1405 transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D Dshi_2488 hypothetical protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D Dshi_1221 transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D Dshi_3611 iron (metal) dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Dshi_3949 iron (metal) dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Dshi_3133 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Dshi_1330 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Dshi_0763 transcriptional regulator K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D Dshi_4156 acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Dshi_3480 modE; transcriptional regulator ModE K02019 modE; molybdate transport system regulatory protein
D Dshi_2718 putative transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D Dshi_2311 putA; bifunctional protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D Dshi_3193 nosR3; nitrous oxide reductase regulatory protein NosR K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D Dshi_0686 nosR1; regulator of nitric oxide reductase transcription K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D Dshi_3181 nosR2; nitrous oxide reductase regulatory protein NosR K19343 nirI; NosR/NirI family transcriptional regulator, nitrite reductase regulator
D Dshi_1203 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D Dshi_3458 parB; chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Dshi_3847 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Dshi_4015 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Dshi_4022 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Dshi_4103 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Dshi_3733 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Dshi_3744 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Dshi_4212 parB; partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Dshi_3856 parB; partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Dshi_0786 transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Dshi_3464 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Dshi_0908 transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D Dshi_3828 paaX; transcriptional regulator PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D Dshi_0414 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D Dshi_0557 greA2; GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D Dshi_3083 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D Dshi_1884 putative DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D Dshi_2385 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D Dshi_1411 transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D Dshi_2257 nrdR; transcriptional repressor nrdR K07738 nrdR; transcriptional repressor NrdR
D Dshi_2475 protein mraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0