+E Ribosome biogenesis KO
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Ribosome Biogenesis - Dinoroseobacter shibae
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D Dshi_0200 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C Dshi_0201 era; GTP-binding protein Era K03595 era; GTPase
C Dshi_1466 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C Dshi_1884 putative DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C Dshi_2385 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
C Dshi_1411 transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C Dshi_3561 nusA; transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA
C Dshi_2249 nusB; N utilization substance protein B-like protein K03625 nusB; transcription antitermination protein NusB
C Dshi_0259 nusG; NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D Dshi_1185 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Dshi_3033 rsmB1; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Dshi_1645 rsmB2; rRNA (cytosine-C(5)-)-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Dshi_0671 rsmC; ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Dshi_0115 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Dshi_3099 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Dshi_3456 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Dshi_2474 mraW; S-adenosyl-L-methionine-dependent methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Dshi_2831 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D Dshi_2571 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Dshi_1672 ribosomal RNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Dshi_0088 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Dshi_1771 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Dshi_3311 radical SAM enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Dshi_3492 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Dshi_3106 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Dshi_2790 RNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Dshi_0315 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Dshi_2610 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Dshi_2908 rluE; ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C Dshi_2841 putative ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C Dshi_1148 GCN5-related N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C Dshi_3341 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C Dshi_0344 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C Dshi_2618 UPF0004 protein yliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C Dshi_1100 prmA; ribosomal L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C Dshi_0200 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Dshi_2340 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
C Dshi_1064 rufX; holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C Dshi_0850 deaD; DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C Dshi_0201 era; GTP-binding protein Era K03595 era; GTPase
C Dshi_1166 engA; small GTP-binding protein K03977 engA; GTPase
C Dshi_1466 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C Dshi_1566 hflX; GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C Dshi_3084 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Dshi_0194 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C Dshi_3041 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C Dshi_3560 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
C Dshi_0087 iojap-like protein K09710 ybeB; ribosome-associated protein
C Dshi_1015 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
C Dshi_3583 SSU ribosomal protein S30P / sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C Dshi_0954 engD; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024