+E Ribosome biogenesis KO
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Ribosome Biogenesis - Dickeya solani IPO 2222
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D A4U42_03370 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D A4U42_06490 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C A4U42_03365 GTPase Era K03595 era; GTPase
C A4U42_12220 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C A4U42_03565 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
C A4U42_12280 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C A4U42_14415 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C A4U42_10245 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D A4U42_18110 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D A4U42_05725 ksgA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D A4U42_06685 16S rRNA (cytosine(967)-C(5))-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D A4U42_12400 16S rRNA (guanine(1207)-N(2))-methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D A4U42_08175 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D A4U42_06015 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D A4U42_20970 yebU; 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D A4U42_08800 gidB; 16S rRNA methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D A4U42_05540 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D A4U42_10830 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D A4U42_09140 16S rRNA (guanine(1516)-N(2))-methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D A4U42_20285 23S rRNA (guanine(745)-N(1))-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D A4U42_04830 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D A4U42_12240 rrmJ; 23S rRNA (uridine(2552)-2'-O)-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D A4U42_12045 23S rRNA (guanine(1835)-N(2))-methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D A4U42_15065 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D A4U42_09155 rRNA methyltransferase K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D A4U42_00695 rlmL; 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))-methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D A4U42_13905 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D A4U42_03125 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D A4U42_04570 rumA; 23S rRNA (uracil(1939)-C(5))-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D A4U42_18425 rumB; 23S rRNA (uracil(747)-C(5))-methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D A4U42_05700 bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D A4U42_19430 23S rRNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D A4U42_01025 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D A4U42_03750 rluD; 23S rRNA pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D A4U42_20450 23S rRNA pseudouridylate synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D A4U42_04335 methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C A4U42_12390 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C A4U42_14120 GCN5 family acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C A4U42_18935 ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C A4U42_18390 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C A4U42_03800 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C A4U42_18320 rimO; ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C A4U42_18605 ribosomal protein S12 methylthiotransferase accessory factor YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C A4U42_14135 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C A4U42_10500 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C A4U42_02125 ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C A4U42_20485 50S ribosomal protein L16 arginine hydroxylase K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
C A4U42_02410 50S ribosomal protein L16 arginine hydroxylase K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C A4U42_03370 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C A4U42_01030 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C A4U42_10570 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C A4U42_06030 crossover junction endodeoxyribonuclease RuvA K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C A4U42_20030 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C A4U42_12315 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C A4U42_03415 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C A4U42_03365 GTPase Era K03595 era; GTPase
C A4U42_06495 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C A4U42_03090 ribosome biogenesis GTPase Der K03977 engA; GTPase
C A4U42_12220 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C A4U42_06065 GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C A4U42_06655 L-threonylcarbamoyladenylate synthase TsaC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C A4U42_08610 (p)ppGpp synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C A4U42_12290 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C A4U42_12275 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C A4U42_02690 ribosome-associated protein K14761 rlbA; ribosome-associated protein
C A4U42_15070 ribosome silencing factor RsfS K09710 ybeB; ribosome-associated protein
C A4U42_15130 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
C A4U42_12235 RNA-binding protein K07574 yhbY; RNA-binding protein
C A4U42_10615 hypothetical protein K09889 yjgA; ribosome-associated protein
C A4U42_10645 hypothetical protein K05808 hpf; ribosome hibernation promoting factor
C A4U42_03760 translation inhibitor protein RaiA K05809 raiA; ribosome-associated inhibitor A
C A4U42_19955 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
C A4U42_01015 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024