+F Repair protein KO #

  DNA Repair and Recombination Proteins - Nitratidesulfovibrio vulgaris Hildenborough

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DVU_0791 methylated-DNA--protein-cysteine methyltransferase, DNA-binding domain protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DVU_0112 deoxyribodipyrimidine photolyase, putative K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DVU_0393 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DVU_0282 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DVU_0990 endonuclease III, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D DVU_2245 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DVU_3051 mutT; mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DVU_2348 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DVU_0791 methylated-DNA--protein-cysteine methyltransferase, DNA-binding domain protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DVU_0112 deoxyribodipyrimidine photolyase, putative K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DVU_0393 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DVU_0282 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DVU_0356 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DVU_3256 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E DVU_0990 endonuclease III, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DVU_3259 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E DVU_1224 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E DVU_0904 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E DVU_1608 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E DVU_1987 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E DVU_1605 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E DVU_0801 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E DVU_0156 ATP-dependent DNA helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DVU_1608 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F DVU_2928 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F DVU_2929 rpoC; DNA-directed RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F DVU_1329 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F DVU_3242 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F DVU_1903 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DVU_1649 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E DVU_1790 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E DVU_0483 DNA mismatch repair protein MutL, putative K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E DVU_1346 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E DVU_1348 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E DVU_1353 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E DVU_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DVU_1194 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E DVU_3203 DNA polymerase III, delta prime subunit, putative K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E DVU_0443 exonulcease, putative K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DVU_3198 DNA polymerase III, gamma and tau subunits, putative K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E DVU_1608 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E DVU_0156 ATP-dependent DNA helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DVU_2222 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E DVU_2843 DNA mismatch endonuclease Vsr, putative K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DVU_0895 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E DVU_1090 recA; recA protein K03553 recA; recombination protein RecA E DVU_2256 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DVU_2255 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DVU_2258 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E DVU_1284 priA; primosomal protein n' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E DVU_0070 Ser/Thr protein phosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E DVU_1090 recA; recA protein K03553 recA; recombination protein RecA E DVU_1590 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E DVU_0904 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DVU_1899 DNA repair protein RecO, putative K03584 recO; DNA repair protein RecO (recombination protein O) E DVU_3200 recR; recombination protein RecR K06187 recR; recombination protein RecR E DVU_2463 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E DVU_2459 hypothetical protein K03554 rdgC; recombination associated protein RdgC E DVU_2256 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DVU_2255 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DVU_2258 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E DVUA0134 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E DVU_0070 Ser/Thr protein phosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DVU_0004 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DVU_0003 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F DVU_3389 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F DVU_0764 hup-2; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F DVU_1134 hupB; DNA-binding protein HU, beta subunit K03530 hupB; DNA-binding protein HU-beta F DVU_1795 hup-3; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F DVU_3187 hup-4; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F DVUA0004 DNA-binding protein HU, putative K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DVU_0904 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DVU_1899 DNA repair protein RecO, putative K03584 recO; DNA repair protein RecO (recombination protein O) F DVU_3200 recR; recombination protein RecR K06187 recR; recombination protein RecR F DVU_1608 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F DVU_0396 hup-1; DNA-binding protein HU K04764 ihfA; integration host factor subunit alpha F DVU_1864 DNA-binding protein HU, beta subunit, putative K05788 ihfB; integration host factor subunit beta F DVU_2973 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F DVU_1987 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F DVU_1605 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DVU_0071 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D DVU_2906 umuC; umuC protein K03502 umuC; DNA polymerase V D DVU_2907 umuD; umuD protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D DVU_1090 recA; recA protein K03553 recA; recombination protein RecA D DVU_2463 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DVU_2222 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D DVU_2245 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DVU_3051 mutT; mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DVU_2348 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DVU_3379 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D DVU_0506 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024