+F Repair protein KO #

  DNA Repair and Recombination Proteins - Dyella sp. GSA-30

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DYGSA30_23400 ogt; (GenBank) methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DYGSA30_35250 phr; (GenBank) deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DYGSA30_02450 ung; (GenBank) uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DYGSA30_14800 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E DYGSA30_43420 mutY; (GenBank) A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DYGSA30_22750 nth; (GenBank) endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D DYGSA30_16240 endonuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D DYGSA30_18940 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DYGSA30_41250 mutT_2; (GenBank) 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DYGSA30_09710 dut; (GenBank) deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DYGSA30_23400 ogt; (GenBank) methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DYGSA30_00880 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DYGSA30_35250 phr; (GenBank) deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DYGSA30_02450 ung; (GenBank) uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DYGSA30_40000 mug; (GenBank) G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E DYGSA30_41700 mismatch-specific DNA-glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E DYGSA30_23410 Ada; (GenBank) DNA methylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E DYGSA30_14800 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E DYGSA30_43420 mutY; (GenBank) A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DYGSA30_06200 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DYGSA30_10020 tag; (GenBank) DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DYGSA30_02790 mutM; (GenBank) formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E DYGSA30_22750 nth; (GenBank) endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DYGSA30_07440 xthA1; (GenBank) exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] E DYGSA30_09760 exoA; (GenBank) exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] E DYGSA30_25120 nfi; (GenBank) endonuclease V K05982 nfi; deoxyribonuclease V [EC:3.1.21.7] D RecJ E DYGSA30_28160 recJ; (GenBank) single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E DYGSA30_11980 ligB; (GenBank) DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E DYGSA30_35200 ligA; (GenBank) DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E DYGSA30_13190 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E DYGSA30_24470 uvrA; (GenBank) UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E DYGSA30_19420 uvrB; (GenBank) UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E DYGSA30_27950 uvrC; (GenBank) UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E DYGSA30_13080 uvrD; (GenBank) DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DYGSA30_13190 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E DYGSA30_11980 ligB; (GenBank) DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E DYGSA30_35200 ligA; (GenBank) DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F DYGSA30_42090 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F DYGSA30_42080 rpoC; (GenBank) DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F DYGSA30_41780 rpoA; (GenBank) DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F DYGSA30_01310 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F DYGSA30_40730 mfd; (GenBank) transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DYGSA30_23950 mutS; (GenBank) DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E DYGSA30_24370 mutL; (GenBank) DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E DYGSA30_35130 sbcB; (GenBank) exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E DYGSA30_37390 xseA; (GenBank) exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E DYGSA30_41570 xseB; (GenBank) exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E DYGSA30_41520 dnaE1; (GenBank) DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E DYGSA30_07830 dnaN; (GenBank) DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DYGSA30_17240 holC; (GenBank) DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E DYGSA30_20510 holA; (GenBank) DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E DYGSA30_27120 holB; (GenBank) DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E DYGSA30_37820 dnaQ; (GenBank) DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DYGSA30_26880 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E DYGSA30_11980 ligB; (GenBank) DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E DYGSA30_35200 ligA; (GenBank) DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E DYGSA30_13080 uvrD; (GenBank) DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DYGSA30_46410 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DYGSA30_24700 recB; (GenBank) RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E DYGSA30_24710 recC; (GenBank) RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E DYGSA30_24690 recD; (GenBank) RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E DYGSA30_24020 recA; (GenBank) protein RecA K03553 recA; recombination protein RecA E DYGSA30_45510 ruvA; (GenBank) Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DYGSA30_45490 ruvB; (GenBank) Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DYGSA30_45520 ruvC; (GenBank) crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E DYGSA30_02320 priA; (GenBank) primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E DYGSA30_35130 sbcB; (GenBank) exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E DYGSA30_24020 recA; (GenBank) protein RecA K03553 recA; recombination protein RecA E DYGSA30_21040 radA; (GenBank) DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E DYGSA30_07840 recF; (GenBank) DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E DYGSA30_01280 recG; (GenBank) ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DYGSA30_28160 recJ; (GenBank) single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DYGSA30_37600 recO; (GenBank) DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E DYGSA30_26900 recR; (GenBank) recombination protein RecR K06187 recR; recombination protein RecR E DYGSA30_34680 recN; (GenBank) DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E DYGSA30_03040 rdgC; (GenBank) recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E DYGSA30_45510 ruvA; (GenBank) Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DYGSA30_45490 ruvB; (GenBank) Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DYGSA30_45520 ruvC; (GenBank) crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E DYGSA30_22970 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DYGSA30_27410 gyrA; (GenBank) DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DYGSA30_07850 gyrB; (GenBank) DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F DYGSA30_03750 topA; (GenBank) DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F DYGSA30_12890 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F DYGSA30_37890 hu; (GenBank) DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DYGSA30_28160 recJ; (GenBank) single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DYGSA30_37600 recO; (GenBank) DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F DYGSA30_26900 recR; (GenBank) recombination protein RecR K06187 recR; recombination protein RecR F DYGSA30_11980 ligB; (GenBank) DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F DYGSA30_35200 ligA; (GenBank) DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F DYGSA30_13290 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F DYGSA30_19500 ihfA; (GenBank) integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F DYGSA30_34470 ihfB; (GenBank) integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F DYGSA30_35130 sbcB; (GenBank) exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F DYGSA30_44420 recQ; (GenBank) ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F DYGSA30_24470 uvrA; (GenBank) UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F DYGSA30_19420 uvrB; (GenBank) UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B F DYGSA30_00540 DNA-binding protein K03746 hns; DNA-binding protein H-NS F DYGSA30_10400 hypothetical protein K03746 hns; DNA-binding protein H-NS F DYGSA30_17980 DNA-binding protein K03746 hns; DNA-binding protein H-NS F DYGSA30_43670 hypothetical protein K03746 hns; DNA-binding protein H-NS F DYGSA30_43700 DNA-binding protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DYGSA30_01710 dinB; (GenBank) DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D DYGSA30_24020 recA; (GenBank) protein RecA K03553 recA; recombination protein RecA D DYGSA30_43510 lexA; (GenBank) LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D DYGSA30_46130 lexA1; (GenBank) LexA repressor 1 K01356 lexA; repressor LexA [EC:3.4.21.88] D DYGSA30_34680 recN; (GenBank) DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DYGSA30_04730 polB; (GenBank) DNA polymerase K02336 polB; DNA polymerase II [EC:2.7.7.7] D DYGSA30_43500 CDP-6-deoxy-delta-3,4-glucoseen reductase K14160 imuA; protein ImuA D DYGSA30_46120 hypothetical protein K14160 imuA; protein ImuA D DYGSA30_43490 DNA repair nucleotidyltransferase K14161 imuB; protein ImuB D DYGSA30_46110 DNA repair nucleotidyltransferase K14161 imuB; protein ImuB D DYGSA30_43480 dnaE2_1; (GenBank) error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D DYGSA30_46100 dnaE2_2; (GenBank) error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D DYGSA30_46410 hypothetical protein K03111 ssb; single-strand DNA-binding protein D DYGSA30_24030 recX; (GenBank) regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D DYGSA30_02840 rep; (GenBank) ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D DYGSA30_12800 dinG; (GenBank) ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D DYGSA30_44770 yoaA; (GenBank) helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D DYGSA30_06830 ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D DYGSA30_18940 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DYGSA30_41250 mutT_2; (GenBank) 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DYGSA30_09710 dut; (GenBank) deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DYGSA30_11000 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DYGSA30_14210 nrdJa; (GenBank) ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DYGSA30_10990 nrdB; (GenBank) ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 29, 2025