+E Ribosome biogenesis KO
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Ribosome Biogenesis - Endosymbiont of Acanthamoeba sp. UWC8
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D I862_01210 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C I862_01205 GTP-binding protein Era K03595 era; GTPase
C I862_05710 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C I862_03340 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C I862_00385 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C I862_00910 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C I862_02880 transcription termination factor K03625 nusB; transcription antitermination protein NusB
C I862_03580 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D I862_07080 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D I862_01920 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D I862_04705 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D I862_06825 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D I862_04100 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D I862_02985 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D I862_02275 rRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D I862_02200 rRNA methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D I862_03700 ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D I862_05350 rRNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D I862_04615 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D I862_01270 RNA-binding S4 domain-containing protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D I862_06425 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D I862_02685 pseudouridylate synthase, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C I862_00950 alpha-L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C I862_02475 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
B rRNA processing factors
C I862_01210 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C I862_02560 ribonuclease Rne/Rng family protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C I862_01320 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C I862_01125 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C I862_01205 GTP-binding protein Era K03595 era; GTPase
C I862_06675 GTP-binding protein Der K03977 engA; GTPase
C I862_05710 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
B Other maturation factors
C I862_02925 putative yrdC domain-containing protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C I862_03250 guanosine polyphosphate pyrophosphohydrolase/synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C I862_00895 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C I862_00915 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
C I862_04515 iojap family protein K09710 ybeB; ribosome-associated protein
C I862_04675 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C I862_02575 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024