+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Candidatus Electronema aureum

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D LDFHOB_11125 rnc; (GenBank) ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 55LCC heterohexameric ATPase complex C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C LDFHOB_01300 era; (GenBank) GTPase Era K03595 era; GTPase C LDFHOB_05695 obgE; (GenBank) GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C LDFHOB_10790 dksA; (GenBank) RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C LDFHOB_06715 nusA; (GenBank) Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C LDFHOB_11050 nusB; (GenBank) transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C LDFHOB_02385 nusG; (GenBank) transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D LDFHOB_05745 rsmA; (GenBank) 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D LDFHOB_10915 rsmB; (GenBank) 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D LDFHOB_12820 rsmD; (GenBank) 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D LDFHOB_07535 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D LDFHOB_10230 rsmG; (GenBank) 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D LDFHOB_05325 rsmH; (GenBank) 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D LDFHOB_08595 rsmI; (GenBank) 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D LDFHOB_04935 Ribosomal RNA small subunit methyltransferase J K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D LDFHOB_04010 23S rRNA (Cytidine1920-2'-O)/16S rRNA (Cytidine1409-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D LDFHOB_01310 rlmB; (GenBank) 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D LDFHOB_10435 Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D LDFHOB_00500 Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D LDFHOB_08620 23S rRNA (Cytosine1962-C5)-methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D LDFHOB_14445 Ribosomal RNA large subunit methyltransferase K/L K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D LDFHOB_02690 rlmN; (GenBank) 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D LDFHOB_04010 23S rRNA (Cytidine1920-2'-O)/16S rRNA (Cytidine1409-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D LDFHOB_00235 rlmD; (GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D LDFHOB_07895 Pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D LDFHOB_14165 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C LDFHOB_01260 rimM; (GenBank) ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C LDFHOB_07885 rimO; (GenBank) 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C LDFHOB_04240 Ribosomal protein S12 methylthiotransferase accessory factor K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C LDFHOB_14000 Ribosomal protein S12 methylthiotransferase accessory factor K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C LDFHOB_13175 prmA; (GenBank) 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C LDFHOB_11125 rnc; (GenBank) ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C LDFHOB_06645 Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C LDFHOB_00475 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] B rRNA helicases C LDFHOB_01775 deaD; (GenBank) ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C LDFHOB_01300 era; (GenBank) GTPase Era K03595 era; GTPase C LDFHOB_14525 der; (GenBank) ribosome biogenesis GTPase Der K03977 engA; GTPase C LDFHOB_05695 obgE; (GenBank) GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C LDFHOB_08575 hflX; (GenBank) GTPase HflX K03665 hflX; GTPase B Other maturation factors C LDFHOB_06525 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C LDFHOB_04470 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C LDFHOB_07390 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C LDFHOB_06705 rbfA; (GenBank) 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A C LDFHOB_06720 rimP; (GenBank) Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C LDFHOB_04560 Ribosome-associated protein K14761 rlbA; ribosome-associated protein C LDFHOB_08010 rsfS; (GenBank) ribosome silencing factor K09710 ybeB; ribosome-associated protein C LDFHOB_10495 yhbY; (GenBank) ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein C LDFHOB_00175 Ribosome-associated protein K09889 yjgA; ribosome-associated protein C LDFHOB_13435 ychF; (GenBank) redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C LDFHOB_13865 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 24, 2026