+F Repair protein KO #

  DNA Repair and Recombination Proteins - Klebsiella aerogenes EA1509E

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CCG30266 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CCG31151 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CCG33925 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CCG33342 A/G-specific adenine glycosylase (EC 3.2.2.-) K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CCG30308 Endonuclease III (EC 4.2.99.18) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CCG31724 Mutator mutT protein (7, 8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CCG32722 Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CCG30266 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CCG28982 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CCG31151 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D CCG28983 Alkylated DNA repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E CCG33925 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CCG33247 G:T/U mismatch-specific uracil/thymine DNA-glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E CCG29165 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CCG33342 A/G-specific adenine glycosylase (EC 3.2.2.-) K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CCG32798 DNA-3-methyladenine glycosylase (EC 3.2.2.20) K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CCG32727 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CCG31142 Endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E CCG30308 Endonuclease III (EC 4.2.99.18) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CCG29615 Exodeoxyribonuclease III (EC 3.1.11.2) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CCG29074 Endonuclease IV (EC 3.1.21.2) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E CCG32359 Endonuclease V (EC 3.1.21.7) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E CCG33428 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CCG28847 DNA ligase (EC 6.5.1.2) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E CCG32715 DNA ligase (EC 6.5.1.2), LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CCG32541 DNA polymerase I (EC 2.7.7.7) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CCG32293 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CCG31074 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E CCG29351 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E CCG29623 Excinuclease cho (excinuclease ABC alternative C subunit) K05984 cho; excinuclease Cho [EC:3.1.25.-] E CCG32418 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CCG33778 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CCG32541 DNA polymerase I (EC 2.7.7.7) K02335 polA; DNA polymerase I [EC:2.7.7.7] E CCG28847 DNA ligase (EC 6.5.1.2) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E CCG32715 DNA ligase (EC 6.5.1.2), LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CCG32373 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CCG32372 DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CCG33029 DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CCG32713 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CCG30627 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CCG33637 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E CCG32179 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E CCG33558 DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E CCG29207 Exodeoxyribonuclease I (EC 3.1.11.1) K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E CCG33988 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CCG31461 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E CCG29447 Exodeoxyribonuclease X (EC 3.1.11.-) K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E CCG31636 DNA polymerase III alpha subunit (EC 2.7.7.7) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CCG32599 DNA polymerase III beta subunit (EC 2.7.7.7) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CCG32086 DNA polymerase III chi subunit (EC 2.7.7.7) K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E CCG31194 DNA polymerase III delta subunit (EC 2.7.7.7) K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CCG30643 DNA polymerase III delta prime subunit (EC 2.7.7.7) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CCG31608 DNA polymerase III epsilon subunit (EC 2.7.7.7) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CCG28743 COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CCG31379 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E CCG31884 DNA polymerase III psi subunit (EC 2.7.7.7) K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E CCG29448 DNA polymerase III theta subunit (EC 2.7.7.7) K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] E CCG29693 DNA polymerase III theta subunit (EC 2.7.7.7) K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E CCG28847 DNA ligase (EC 6.5.1.2) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E CCG32715 DNA ligase (EC 6.5.1.2), LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CCG32418 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CCG33778 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CCG32292 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CCG28696 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CCG29022 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CCG32966 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CCG33788 DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CCG29333 Very-short-patch mismatch repair endonuclease (G-T specific) K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CCG33571 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E CCG33569 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E CCG33572 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CCG33690 RecA protein K03553 recA; recombination protein RecA E CCG29430 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CCG29431 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CCG29429 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CCG32490 Helicase PriA essential for oriC/DnaA-independent DNA replication K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CCG31382 Primosomal replication protein N prime prime K04067 priC; primosomal replication protein N'' E CCG31899 Primosomal protein I K02317 dnaT; DNA replication protein DnaT E CCG29207 Exodeoxyribonuclease I (EC 3.1.11.1) K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E CCG31492 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E CCG31491 Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E CCG33690 RecA protein K03553 recA; recombination protein RecA E CCG31868 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E CCG32600 DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF E CCG32710 ATP-dependent DNA helicase RecG (EC 3.6.1.-) K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CCG33428 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CCG33939 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E CCG31377 Recombination protein RecR K06187 recR; recombination protein RecR E CCG33892 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CCG31494 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC E CCG29430 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CCG29431 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CCG29429 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E CCG29052 DNA or RNA helicase of superfamily II K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E CCG31492 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E CCG31491 Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E CCG32080 FIG00732195: hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CCG28973 DNA gyrase subunit A (EC 5.99.1.3) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CCG32601 DNA gyrase subunit B (EC 5.99.1.3) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CCG29666 DNA topoisomerase I (EC 5.99.1.2) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CCG32357 DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha F CCG31421 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta F CCG28599 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CCG30866 Exodeoxyribonuclease VIII (EC 3.1.11.-) K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-] F CCG33998 putative recet K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-] F CCG33428 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CCG33939 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F CCG31377 Recombination protein RecR K06187 recR; recombination protein RecR F CCG28847 DNA ligase (EC 6.5.1.2) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F CCG32715 DNA ligase (EC 6.5.1.2), LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F CCG33052 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F CCG30494 Integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha F CCG30929 Integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F CCG29207 Exodeoxyribonuclease I (EC 3.1.11.1) K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F CCG32413 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CCG32293 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CCG31074 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F CCG30531 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS F CCG28794 hypothetical protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CCG31592 DNA polymerase IV (EC 2.7.7.7) K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D CCG29554 Error-prone, lesion bypass DNA polymerase V (UmuC) K03502 umuC; DNA polymerase V D CCG29555 Error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D CCG33690 RecA protein K03553 recA; recombination protein RecA D CCG32309 SOS-response repressor and protease LexA (EC 3.4.21.88) K01356 lexA; repressor LexA [EC:3.4.21.88] D CCG30853 SOS-response repressor and protease LexA (EC 3.4.21.88) K01356 lexA; repressor LexA [EC:3.4.21.88] D CCG33881 SOS-response repressor and protease LexA (EC 3.4.21.88) K01356 lexA; repressor LexA [EC:3.4.21.88] D CCG33892 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CCG31770 DNA polymerase II (EC 2.7.7.7) K02336 polB; DNA polymerase II [EC:2.7.7.7] D CCG32292 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CCG28696 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CCG30665 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D CCG30854 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D CCG33691 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CCG32450 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D CCG30884 DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D CCG31052 ATP-dependent helicase DinG/Rad3 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CCG29490 DinG family ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D CCG31724 Mutator mutT protein (7, 8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CCG32722 Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CCG33711 Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CCG28971 Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CCG28970 Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CCG33710 Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024