+E Transcription factors KO
#
Transcription Factors - Escherichia coli B REL606
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D ECB_00066 araC; DNA-binding transcriptional dual regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D ECB_04223 hpaA; HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D ECB_03792 rhaR; DNA-binding transcriptional activator, L-rhamnose-binding K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D ECB_03791 rhaS; DNA-binding transcriptional activator, L-rhamnose-binding K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D ECB_01704 celD; DNA-binding transcriptional dual regulator K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D ECB_03987 adiY; DNA-binding transcriptional activator K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA
D ECB_02337 yfeG; predicted DNA-binding transcriptional regulator K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D ECB_00518 appY; DNA-binding transcriptional activator K07780 appY; AraC family transcriptional regulator, transcriptional regulator required for anaerobic and stationary phase induction of genes
D ECB_00520 envY; DNA-binding transcriptional activator of porin biosynthesis K11920 envY; AraC family transcriptional regulator
D ECB_03934 soxS; DNA-binding transcriptional dual regulator K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D ECB_01490 marA; DNA-binding transcriptional dual activator of multiple antibiotic resistance K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D ECB_04272 rob; DNA-binding transcriptional activator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D ECB_01356 feaR; DNA-binding transcriptional dual regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D ECB_00261 ykgD; predicted DNA-binding transcriptional regulator K21746 rclR; AraC family transcriptional regulator, reactive chlorine species (RCS)-specific activator of rcl operon
D ECB_03363 yhiW; DNA-binding transcriptional activator K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D ECB_01522 putative AraC-type regulatory protein encoded in prophage K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D ECB_03364 gadX; DNA-binding transcriptional dual regulator K21905 gadX; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D ECB_03989 melR; DNA-binding transcriptional dual regulator K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D ECB_01759 yeaM; predicted DNA-binding transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT
D ECB_02140 ada; fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D ECB_02659 gcvA; DNA-binding transcriptional dual regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D ECB_03651 ilvY; DNA-binding transcriptional dual regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D ECB_03707 metR; DNA-binding transcriptional activator, homocysteine-binding K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D ECB_00019 nhaR; DNA-binding transcriptional activator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D ECB_03846 oxyR; DNA-binding transcriptional dual regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D ECB_02747 iciA; chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D ECB_00078 leuO; leucine transcriptional activator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D ECB_02429 hcaR; DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator
D ECB_02985 tdcA; DNA-binding transcriptional activator K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator
D ECB_00454 ybbS; DNA-binding transcriptional activator of the allD operon K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon
D ECB_00292 cynR; DNA-binding transcriptional dual regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D ECB_01251 cysB; DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D ECB_01897 cbl; DNA-binding transcriptional activator of cysteine biosynthesis K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D ECB_02274 dsdC; DNA-binding transcriptional dual regulator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D ECB_01316 abgR; predicted DNA-binding transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D ECB_01769 yeaT; predicted DNA-binding transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D ECB_01898 nac; DNA-binding transcriptional dual regulator of nitrogen assimilation K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D ECB_04196 yjiE; predicted DNA-binding transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D ECB_03103 yhcS; predicted DNA-binding transcriptional regulator, efflux system K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D ECB_02930 ygiP; predicted DNA-binding transcriptional regulator K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon
D ECB_03642 hdfR; transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D ECB_01306 ycjZ; predicted DNA-binding transcriptional regulator K24082 pgrR; LysR family transcriptional regulator, regulator of peptidoglycan recycling
C DeoR family
D ECB_00807 deoR; DNA-binding transcriptional repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D ECB_03274 glpR; DNA-binding transcriptional repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D ECB_02016 gatR; galactitol utilization operon repressor K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor
D ECB_02996 agaR; DNA-binding transcriptional dual regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D ECB_02656 fucR; DNA-binding transcriptional activator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D ECB_02557 srlR; DNA-bindng transcriptional repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D ECB_04058 yjfQ; DNA-binding transcriptional dual regulator K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D ECB_03769 yihW; predicted DNA-binding transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor
C LacI family
D ECB_00299 lacI; lac repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D ECB_02080 galS; DNA-binding transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ECB_02685 galR; DNA-binding transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ECB_03639 rbsR; DNA-binding transcriptional repressor of ribose metabolism K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ECB_03421 xylR; DNA-binding transcriptional activator, xylose-binding K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ECB_03819 cytR; DNA-binding transcriptional dual regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D ECB_00081 fruR; DNA-binding transcriptional dual regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D ECB_02648 L-fuculose phosphate aldolase K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D ECB_04109 treR; trehalose repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D ECB_02564 ascG; DNA-binding transcriptional repressor K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D ECB_01629 purR; DNA-binding transcriptional repressor, hypoxanthine-binding K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D ECB_03289 gntR; DNA-binding transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D ECB_04130 idnR; DNA-binding transcriptional repressor, 5-gluconate-binding K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D ECB_02944 ebgR; DNA-binding transcriptional repressor K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D ECB_01589 malI; DNA-binding transcriptional repressor K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D ECB_03974 phnF; predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D ECB_03225 yhfR; predicted DNA-binding transcriptional regulator K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator
D ECB_00689 farR; DNA-binding transcriptional dual regulator, fatty-acyl-binding K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor
D ECB_01162 fadR; fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D ECB_00112 pdhR; transcriptional regulator of pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D ECB_02849 glcC; DNA-binding transcriptional dual regulator, glycolate-binding K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D ECB_04193 uxuR; DNA-binding transcriptional repressor K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D ECB_02963 exuR; DNA-binding transcriptional repressor K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D ECB_03462 lldR; DNA-binding transcriptional repressor K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D ECB_03578 dgoR; predicted DNA-binding transcriptional regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D ECB_03086 nanR; transcriptional regulator NanR K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D ECB_01407 yncC; predicted DNA-binding transcriptional regulator K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator
D ECB_02520 ygaE; DNA-binding transcriptional dual regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D ECB_01499 ydfH; predicted DNA-binding transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
C TetR/AcrR family
D ECB_00269 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D ECB_00415 acrR; DNA-binding transcriptional repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D ECB_03498 slmA; nucleoid occlusion protein K05501 slmA; TetR/AcrR family transcriptional regulator
D ECB_01016 ycdC; predicted DNA-binding transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D ECB_01619 ydhM; predicted DNA-binding transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D ECB_01587 uidR; DNA-binding transcriptional repressor K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D ECB_03122 envR; DNA-binding transcriptional regulator K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D ECB_04117 yjgJ; predicted transcriptional regulator K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA
D ECB_01107 ycfQ; predicted DNA-binding transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D ECB_03848 yijC; DNA-binding transcriptional repressor K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D ECB_00763 ybiH; predicted DNA-binding transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D ECB_00813 ybjK; predicted DNA-binding transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D ECB_03627 asnC; DNA-binding transcriptional dual regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D ECB_00893 lrp; DNA-binding transcriptional dual regulator, leucine-binding K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D ECB_00399 ybaO; predicted DNA-binding transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D ECB_00253 ykgK; predicted regulator K21963 ecpR; LuxR family transcriptional regulator, Mat/Ecp fimbriae transcriptional regulator
D ECB_01037 csgD; DNA-binding transcriptional activator in two-component regulatory system K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D ECB_03355 yhiF; predicted DNA-binding ranscriptional regulator K21901 dctR; LuxR family transcriptional regulator, dicarboxylate transport regulator
D ECB_04243 bglJ; DNA-binding transcriptional activator K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D ECB_03270 malT; transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D ECB_03360 yhiE; DNA-binding transcriptional activator K21907 gadE; LuxR family transcriptional regulator, glutamate-dependent acid resistance regulator
C MarR family
D ECB_01489 marR; DNA-binding transcriptional repressor of multiple antibiotic resistance K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D ECB_01612 slyA; transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D ECB_02539 emrR; DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
C MerR family
D ECB_00438 cueR; DNA-binding transcriptional activator protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D ECB_03143 zntR; zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D ECB_03935 soxR; DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D ECB_02056 yehV; DNA-binding transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D ECB_01137 ycgE; predicted DNA-binding transcriptional regulator K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes
C Fur family
D ECB_00640 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D ECB_03918 zur; DNA-binding transcriptional repressor, Zn(II)-binding K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D ECB_03890 iclR; DNA-binding transcriptional repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D ECB_00300 mhpR; DNA-binding transcriptional activator, 3HPP-binding K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
D ECB_00456 allR; DNA-binding transcriptional repressor K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons
D ECB_01798 kdgR; predicted DNA-binding transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D ECB_03426 yiaJ; predicted DNA-binding transcriptional repressor K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D ECB_03208 crp; DNA-binding transcriptional dual regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D ECB_01311 fnr; DNA-binding transcriptional dual regulator, global regulator of anaerobic growth K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D ECB_02092 yeiL; DNA-binding transcriptional activator of stationary phase nitrogen survival K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D ECB_02423 iscR; DNA-binding transcriptional repressor K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D ECB_04045 yjeB; predicted DNA-binding transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D ECB_03350 arsR; DNA-binding transcriptional repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D ECB_01392 ydcN; predicted DNA-binding transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D ECB_00784 mntR; DNA-binding transcriptional regulator of mntH K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D ECB_03961 rpiR; DNA-binding transcriptional repressor K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon
D ECB_02327 yfeT; predicted DNA-binding transcriptional regulator K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D ECB_01824 yebK; predicted DNA-binding transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D ECB_03854 birA; biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D ECB_03119 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D ECB_04269 trpR; Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D ECB_00285 prpR; DNA-binding transcriptional activator K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D ECB_03053 nlp; DNA-binding transcriptional activator of maltose metabolism K07724 ner; Ner family transcriptional regulator
D ECB_00071 yabN; DNA-binding transcriptional regulator K11925 sgrR; SgrR family transcriptional regulator
D ECB_04266 nadR; nicotinamide-nucleotide adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D ECB_02893 ygiT; predicted DNA-binding transcriptional regulator K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D ECB_01276 ycjC; DNA-binding transcriptional repressor K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D ECB_01470 hipB; DNA-binding transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D ECB_01539 prophage CP-9330 DicA-like protein K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D ECB_02951 ygjM; predicted DNA-binding transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D ECB_02383 hyfR; DNA-binding transcriptional activator, formate sensing K12146 hyfR; hydrogenase-4 transcriptional activator
D ECB_02559 ygaA; anaerobic nitric oxide reductase transcription regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D ECB_02581 fhlA; DNA-binding transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator
D ECB_00161 cdaR; DNA-binding transcriptional activator K02647 cdaR; carbohydrate diacid regulator
D ECB_00714 modE; DNA-binding transcriptional dual regulator K02019 modE; molybdate transport system regulatory protein
D ECB_03405 yiaG; predicted transcriptional regulator K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D ECB_03330 nikR; nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D ECB_03824 metJ; transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D ECB_01017 putA; fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
D ECB_03607 bglG; transcriptional antiterminator of the bgl operon K03488 licT; beta-glucoside operon transcriptional antiterminator
D ECB_03782 frvR; predicted regulator K18531 frvR; putative frv operon regulatory protein
C Others
D ECB_00311 frmR; regulator protein that represses frmRAB operon K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D ECB_00386 bolA; regulator of penicillin binding proteins and beta lactamase transcription (morphogene) K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D ECB_02511 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ECB_03733 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D ECB_03097 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D ECB_00633 nagC; DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine K02565 nagC; N-acetylglucosamine repressor
D ECB_01563 mlc; DNA-binding transcriptional repressor K15545 mlc; transcriptional regulator of PTS gene
D ECB_03456 mtlR; DNA-binding repressor K02562 mtlR; mannitol operon repressor
D ECB_01300 tyrR; DNA-binding transcriptional dual regulator, tyrosine-binding K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D ECB_04004 cadC; DNA-binding transcriptional activator K03765 cadC; transcriptional activator of cad operon
D ECB_02371 gcvR; DNA-binding transcriptional repressor, regulatory protein accessory to GcvA K03567 gcvR; glycine cleavage system transcriptional repressor
D ECB_01280 pspF; DNA-binding transcriptional activator K03974 pspF; psp operon transcriptional activator
D ECB_01283 pspC; DNA-binding transcriptional activator K03973 pspC; phage shock protein C
D ECB_01176 dhaR; predicted DNA-binding transcriptional regulator, dihydroxyacetone K05880 dhaR; transcriptional activator for dhaKLM operon
D ECB_00578 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D ECB_02778 yqgE; hypothetical protein K07735 algH; putative transcriptional regulator
D ECB_00038 caiF; DNA-binding transcriptional activator K08277 caiF; transcriptional activator CaiF
D ECB_00144 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D ECB_00361 ybaD; hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D ECB_00235 crl; DNA-binding transcriptional regulator K11926 crl; sigma factor-binding protein Crl
D ECB_03273 rtcR; sigma 54-dependent transcriptional regulator of rtcBA expression K14414 rtcR; transcriptional regulatory protein RtcR
D ECB_01538 dicC; transcriptional repressor of cell division inhibition protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D ECB_00082 yabB; hypothetical protein K03925 mraZ; transcriptional regulator MraZ
D ECB_02895 ygiV; predicted transcriptional regulator K07471 ygiV; probable transcriptional regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0