+E Ribosome biogenesis KO
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Ribosome Biogenesis - Enterococcus cecorum
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D NCTC12421_02155 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C NCTC12421_00908 era; GTPase Era K03595 era; GTPase
C NCTC12421_01254 obg; GTPase obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C NCTC12421_01396 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C NCTC12421_01763 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C NCTC12421_00621 nusG; transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D NCTC12421_00317 rsuA; RNA pseudouridine synthase YtzG K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D NCTC12421_02148 rluB_2; pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D NCTC12421_00493 ksgA; KsgA/Dim1 family 16S ribosomal RNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D NCTC12421_02276 rsmB; Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D NCTC12421_00228 rlmG; 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D NCTC12421_01158 rsmD; RsmD family RNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D NCTC12421_02001 rsmE; 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D NCTC12421_02466 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NCTC12421_01752 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D NCTC12421_01806 rsmI; tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D NCTC12421_01758 tlyA; hemolysin TlyA family protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D NCTC12421_00611 rlmA; 23S rRNA m(1)G-748 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D NCTC12421_00065 trmH family tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D NCTC12421_00447 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D NCTC12421_01620 rlmI; SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D NCTC12421_01897 rlmN; radical SAM superfamily protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D NCTC12421_01758 tlyA; hemolysin TlyA family protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D NCTC12421_01016 rlmCD_1; 23S rRNA (uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D NCTC12421_01557 rluB_1; pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D NCTC12421_00549 rluD_1; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NCTC12421_01287 rluD_2; 23S rRNA pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NCTC12421_02135 rluD_3; RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NCTC12421_01166 erm; ErmB, rRNA adenine N-6-methyltransferase K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
B ribosomal protein modification factors
C NCTC12421_01516 paiA_2; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C NCTC12421_01517 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C NCTC12421_01306 ydaF_3; Putative ribosomal N-acetyltransferase YdaF K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C NCTC12421_01669 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C NCTC12421_02002 prmA; [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C NCTC12421_02155 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C NCTC12421_00793 yrrK; Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C NCTC12421_00064 mrnC; ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C NCTC12421_00324 cshA; DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C NCTC12421_01218 cshB; DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C NCTC12421_00908 era; GTPase Era K03595 era; GTPase
C NCTC12421_02431 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C NCTC12421_01546 der; ribosome-associated GTPase EngA K03977 engA; GTPase
C NCTC12421_01254 obg; GTPase obg K03979 obgE; GTPase [EC:3.6.5.-]
C NCTC12421_01376 ylqF; ribosome biogenesis GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
C NCTC12421_00720 hflX; GTP-binding protein HflX K03665 hflX; GTPase
C NCTC12421_01412 yqeH; ribosome biogenesis GTPase YqeH K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C NCTC12421_02087 rimN; YrdC/Sua5 family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C NCTC12421_01999 relA_2; RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C NCTC12421_01392 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C NCTC12421_01397 rimP; ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
C NCTC12421_00008 S4 domain-containing protein YaaA K14761 rlbA; ribosome-associated protein
C NCTC12421_01408 ybeB; iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein
C NCTC12421_00906 metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C NCTC12421_01411 yhbY; RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
C NCTC12421_00857 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C NCTC12421_02462 engD; translation-associated GTPase K06942 ychF; ribosome-binding ATPase
C NCTC12421_01600 nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 18, 2025