+C RNA KO
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Non-coding RNAs - Escherichia coli O127:H6 E2348/69 (EPEC)
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ATransfer RNA
B E2348C_tRNA_02 alaV; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
B E2348C_tRNA_84 alaU_1; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
B E2348C_tRNA_77 alaT; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
B E2348C_tRNA_45 alaX; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
B E2348C_tRNA_46 alaW; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
B E2348C_tRNA_42 argW; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B E2348C_tRNA_52 argQ; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B E2348C_tRNA_53 argZ; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B E2348C_tRNA_55 argV; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B E2348C_tRNA_54 argY; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B E2348C_tRNA_72 argX; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B E2348C_tRNA_06 argU; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B E2348C_tRNA_26 tRNA_26; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B E2348C_tRNA_30 tRNA_30; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B E2348C_tRNA_44 tRNA_44; Anti Codon: GTT; tRNA-Ans K14220 tRNA-Asn; tRNA Asn
B E2348C_tRNA_37 asnT; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
B E2348C_tRNA_38 asnW; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
B E2348C_tRNA_40 asnV; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
B E2348C_tRNA_39 asnU; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
B E2348C_tRNA_04 aspV; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
B E2348C_tRNA_70 aspT; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
B E2348C_tRNA_03 aspU; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
B E2348C_tRNA_34 cysT; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
B E2348C_tRNA_07 glnV; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
B E2348C_tRNA_09 glnW; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
B E2348C_tRNA_10 glnU; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
B E2348C_tRNA_51 gltW; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
B E2348C_tRNA_78 gltT; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
B E2348C_tRNA_66 gltV_1; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
B E2348C_tRNA_69 gltU; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
B E2348C_tRNA_35 glyW; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B E2348C_tRNA_88 glyY; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B E2348C_tRNA_87 glyX; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B E2348C_tRNA_86 glyV; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B E2348C_tRNA_60 glyU; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B E2348C_tRNA_81 glyT; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B E2348C_tRNA_73 hisR; tRNA-His K14226 tRNA-His; tRNA His
B E2348C_tRNA_01 ileV; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
B E2348C_tRNA_83 ileU_1; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
B E2348C_tRNA_76 ileT; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
B E2348C_tRNA_11 leuW; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B E2348C_tRNA_33 leuZ; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B E2348C_tRNA_64 leuU; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B E2348C_tRNA_90 leuV; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B E2348C_tRNA_92 leuQ; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B E2348C_tRNA_91 leuP; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B E2348C_tRNA_74 leuT; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B E2348C_tRNA_89 leuX; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B E2348C_tRNA_18 lysZ; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B E2348C_tRNA_50 lysV; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B E2348C_tRNA_20 lysQ_2; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B E2348C_tRNA_13 lysT; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B E2348C_tRNA_17 lysY; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B E2348C_tRNA_15 lysW; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B E2348C_tRNA_19 lysQ_1; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B E2348C_tRNA_08 metU; tRNA-Met K14230 tRNA-Met; tRNA Met
B E2348C_tRNA_12 metT; tRNA-Met K14230 tRNA-Met; tRNA Met
B E2348C_tRNA_24 tRNA_24; tRNA-Ile K14230 tRNA-Met; tRNA Met
B E2348C_tRNA_28 tRNA_28; tRNA-Ile K14230 tRNA-Met; tRNA Met
B E2348C_tRNA_57 metZ; tRNA-Met K14230 tRNA-Met; tRNA Met
B E2348C_tRNA_63 metY; tRNA-Met K14230 tRNA-Met; tRNA Met
B E2348C_tRNA_58 metW; tRNA-Met K14230 tRNA-Met; tRNA Met
B E2348C_tRNA_59 metV; tRNA-Met K14230 tRNA-Met; tRNA Met
B E2348C_tRNA_62 ileX; tRNA-Ile K14230 tRNA-Met; tRNA Met
B E2348C_tRNA_61 pheV; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
B E2348C_tRNA_85 pheU; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
B E2348C_tRNA_41 proL; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
B E2348C_tRNA_67 proK; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
B E2348C_tRNA_75 proM; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
B E2348C_tRNA_36 serU; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
B E2348C_tRNA_56 serV; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
B E2348C_tRNA_23 serX; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
B E2348C_tRNA_21 serW; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
B E2348C_tRNA_22 serT; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
B E2348C_tRNA_43 tRNA_43; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
B E2348C_tRNA_05 thrW; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
B E2348C_tRNA_65 thrV; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
B E2348C_tRNA_79 thrU; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
B E2348C_tRNA_82 thrT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
B E2348C_tRNA_71 trpT; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
B E2348C_tRNA_27 tyrT; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
B E2348C_tRNA_80 tyrU; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
B E2348C_tRNA_31 valV; tRNA-Val K14237 tRNA-Val; tRNA Val
B E2348C_tRNA_14 valT; tRNA-Val K14237 tRNA-Val; tRNA Val
B E2348C_tRNA_16 valZ; tRNA-Val K14237 tRNA-Val; tRNA Val
B E2348C_tRNA_49 valY; tRNA-Val K14237 tRNA-Val; tRNA Val
B E2348C_tRNA_48 valX; tRNA-Val K14237 tRNA-Val; tRNA Val
B E2348C_tRNA_47 valU; tRNA-Val K14237 tRNA-Val; tRNA Val
B E2348C_tRNA_32 valW; tRNA-Val K14237 tRNA-Val; tRNA Val
B E2348C_tRNA_68 selC; Anti Codon: TCA; tRNA-selenocystein K14238 tRNA-Sec; tRNA Sec
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ARibosomal RNA
B Prokaryotic rRNA
C E2348C_rRNA_17 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C E2348C_rRNA_14 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C E2348C_rRNA_6 rrsG; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C E2348C_rRNA_20 rrsE; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C E2348C_rRNA_1 rrsH; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C E2348C_rRNA_11 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C E2348C_rRNA_10 rrsD; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C E2348C_rRNA_12 rrlC; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C E2348C_rRNA_9 rrlD; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C E2348C_rRNA_21 rrlE; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C E2348C_rRNA_18 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C E2348C_rRNA_15 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C E2348C_rRNA_5 rrlG; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C E2348C_rRNA_2 rrlH; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C E2348C_rRNA_13 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C E2348C_rRNA_8 rrfD; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C E2348C_rRNA_3 rrfH; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C E2348C_rRNA_16 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C E2348C_rRNA_22 rrfE; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C E2348C_rRNA_4 rrfG; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C E2348C_rRNA_19 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C E2348C_rRNA_7 rrfF; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
B Eukaryotic rRNA
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ASmall non-coding RNA
B Micro RNA
B Small nuclear RNA
B Small nucleolar RNA
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ALong-non-coding RNA
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AOther RNA
B Signal recognition particle
C E2348C_ncR_05 ffs; 4.5S sRNA component of signal recognition particle (SRP); works with the Ffh protein; involved in co-translational protein translocation into and possibly through membranes K01983 ffs; SRP RNA
B Ribonuclease P
C E2348C_ncR_55 rnpB; RNase P, M1 sRNA component; involved in transfer RNA and 4.5S RNA-processing K01978 rnpB; M1 RNA
B Antisense regulators
C E2348C_ncR_01 sokC; antisense sRNA blocking mokC, and hence hokC translation K18871 sokC; sRNA antisense regulator of MokC and HokC protein
C E2348C_ncR_14 rdlA; antisense sRNA RdlA affects LdrA translation K18863 rdlA_B_C_D; sRNA antisense regulator of LdrA/B/C/D protein
C E2348C_ncR_32 ryeD; sRNA, function unknown K18865 sibB; sRNA antisense regulator of IbsB protein
C E2348C_ncR_50 rygC; sRNA, function unknown K18867 sibC; sRNA antisense regulator of IbsC protein
C E2348C_ncR_53 rygD; sRNA, function unknown K18868 sibD; sRNA antisense regulator of IbsD protein
B Unclassified
C E2348C_ncR_43 ssrA; tmRNA, mediator of trans-translation reaction K15035 ssrA; transfer-messenger RNA
C E2348C_ncR_29 dsrA; regulatory sRNA that enhances translation of RpoS; component of acid resistance regulatory circuit; also antagonist of H-NS function by decreasing H-NS levels K18502 dsrA; small regulatory RNA DsrA
C E2348C_ncR_06 sroB; sRNA, function unknown K18503 chiX; small regulatory RNA ChiX
C E2348C_ncR_58 ryhA; predicted antisense sRNA regulator K18504 arcZ; small regulatory RNA ArcZ
C E2348C_ncR_39 sroF; sRNA, function unknown K15841 glmY; small regulatory RNA GlmY
C E2348C_ncR_65 ryiA; sRNA, function unknown K18505 glmZ; small regulatory RNA GlmZ
C E2348C_ncR_03 sgrS; sRNA, regulates glucose transport; positively regulated by SgrR; binds Hfq K18506 sgrS; small regulatory RNA SgrS
C E2348C_ncR_60 rhyB; regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target K18507 ryhB; small regulatory RNA RyhB
C E2348C_ncR_09 rybB; sRNA, effector of ompC and ompW mRNA instability; requires Hfq K18508 rybB; small regulatory RNA RybB
C E2348C_ncR_44 micA; sRNA effector of ompA mRNA instability instationary phase; requires Hfq K18511 micA; small regulatory RNA MicA
C E2348C_ncR_35 micF; regulatory antisense sRNA affecting ompF expression; member of soxRS regulon K18513 micF; small regulatory RNA MicF
C E2348C_ncR_45 csrB; CsrA-binding sRNA, antagonizing CsrA regulation; blocks the CsrA binding of glgC mRNA K18515 csrB; small regulatory RNA CsrB
C E2348C_ncR_67 csrC; CsrC sRNA sequesters CsrA, a carbon fluxregulator; also affects biofilms and motilty K18516 csrC; small regulatory RNA CsrC
C E2348C_ncR_22 rprA; positive regulatory sRNA for RpoS translation; non-essential gene K18518 rprA; small regulatory RNA RprA
C E2348C_ncR_33 ryeE; sRNA, function unknown K18520 cyaR; small regulatory RNA CyaR
C E2348C_ncR_46 gcvB; regulatory sRNA, regulated by gcvA and gcvR K18521 gcvB; small regulatory RNA GcvB
C E2348C_ncR_47 omrA; sRNA, down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq K18522 omrA; small regulatory RNA OmrA
C E2348C_ncR_48 omrB; sRNA, down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq K18523 omrB; small regulatory RNA OmrB
C E2348C_ncR_66 spf; Spot 42 sRNA; antisense regulator of galK translation K18527 spf; small regulatory RNA Spot 42
C E2348C_ncR_16 isrA; sRNA, function unknown K21091 mcaS; small regulatory RNA McaS
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#Last updated: January 23, 2024