+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Escherichia coli K-12 W3110

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D JW2551 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D JW5740 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C JW2550 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase C JW3150 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C JW0141 dksA; transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor C JW3138 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA C JW0406 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB C JW3945 nusG; transcription termination factor K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D JW2171 rsuA; 16S rRNA pseudouridylate 516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D JW0050 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D JW3250 rsmB; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D JW4333 rsmC; 16S RNA m2G1207 methylase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D JW3430 yhhF; predicted methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D JW2913 yggJ; hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D JW5301 yebU; predicted methyltransferase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178] D JW3718 gidB; methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D JW0080 mraW; S-adenosyl-dependent methyltransferase activity on membrane-located substrates K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D JW3115 yraL; predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D JW5672 yhiQ; predicted SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D JW1811 rrmA; 23S rRNA m1G745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D JW4138 rlmB; 23S rRNA (Gm2251)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D JW3146 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D JW5107 ybiN; predicted SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D JW5513 ygjO; predicted methyltransferase small domain K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D JW0631 ybeA; conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D JW5898 yccW; predicted methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D JW3466 yhiR; predicted DNA (exogenous) processing protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D JW0931 ycbY; predicted methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D JW2777 ygdE; predicted methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D JW2501 yfgB; hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D JW2756 rumA; 23S rRNA (uracil-5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D JW0843 rumB; 23S rRNA m(5)U747 methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D JW0057 rluA; pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D JW1261 rluB; 23S rRNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D JW1072 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D JW2576 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D JW1121 ymfC; 23S rRNA pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D JW3982 yjbC; 23S rRNA pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D JW2565 yfiF; predicted methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] B ribosomal protein modification factors C JW4335 rimI; acetylase for 30S ribosomal subunit protein S18 K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C JW1053 rimJ; ribosomal-protein-S5-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C JW0836 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C JW1423 rimL; ribosomal-protein-L7/L12-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] C JW5413 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM C JW0819 yliG; predicted SAM-dependent methyltransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C JW0888 ycaO; conserved hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C JW3227 prmA; methylase for 50S ribosomal subunit protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C JW5841 prmB; N5-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C JW1114 ycfD; conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C JW2551 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3] C JW1071 rne; fused ribonucleaseE endoribonuclease and scaffold for formation of degradosome K08300 rne; ribonuclease E [EC:3.1.26.12] C JW3216 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C JW2916 yqgF; predicted Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C JW1337 dbpA; ATP-dependent RNA helicase specific for 23S rRNA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C JW5531 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C JW2560 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] B GTPases C JW2550 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase C JW4122 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C JW5403 der; predicted GTP-binding protein K03977 engA; GTPase C JW3150 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-] C JW4131 hflX; predicted GTPase K03665 hflX; GTPase B Other maturation factors C JW3243 yrdC; dsRNA-binding protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C JW3625 spoT; bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C JW3136 rbfA; 30s ribosome binding factor K02834 rbfA; ribosome-binding factor A C JW5533 yhbC; conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP C JW5070 ybcJ; predicted RNA-binding protein K14761 rlbA; ribosome-associated protein C JW5090 ybeB; hypothetical protein K09710 ybeB; ribosome-associated protein C JW0656 ybeY; conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor C JW3147 yhbY; predicted RNA-binding protein K07574 yhbY; RNA-binding protein C JW3577 yibL; conserved hypothetical protein K14762 yibL; ribosome-associated protein C JW4193 yjgA; conserved hypothetical protein K09889 yjgA; ribosome-associated protein C JW0936 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor C JW3170 yhbH; predicted ribosome-associated, sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor C JW2578 yfiA; cold shock protein associated with 30S ribosomal subunit K05809 raiA; ribosome-associated inhibitor A C JW5962 sra; 30S ribosomal subunit protein S22 K02972 sra; stationary-phase-induced ribosome-associated protein C JW1194 ychF; predicted GTP-binding protein K06942 ychF; ribosome-binding ATPase C JW1074 yceD; conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024