+D Messenger RNA Biogenesis KO #

  Prokaryotic Defense System - Escherichia coli ATCC 8739

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ACRISPR-Cas system B Universal Cas proteins C EcolC_0957 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 C EcolC_0958 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 B Type I CRISPR-Cas system C Type I signiture cas proteins D EcolC_0951 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] C Subtype I-A factors C Subtype I-B factors C Subtype I-C factors C Subtype I-D factors C Subtype I-E factors D EcolC_0952 CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA D EcolC_0953 CRISPR-associated protein, Cse2 family K19046 casB; CRISPR system Cascade subunit CasB D EcolC_0954 CRISPR-associated protein, Cse4 family K19124 casC; CRISPR system Cascade subunit CasC D EcolC_0955 CRISPR-associated protein Cas5 family K19125 casD; CRISPR system Cascade subunit CasD D EcolC_0956 CRISPR-associated protein, Cse3 family K19126 casE; CRISPR system Cascade subunit CasE C Subtype I-F factors C Subtype I-U factors B Type II CRISPR-Cas system C Type II signiture cas proteins C Subtype II-A factors C Subtype II-B factors B Type III CRISPR-Cas system C Type III signiture cas proteins C Subtype III-A factors C Subtype III-B factors C Subtype III-U factors # ARestriction and modification system (R-M system) B Type I R-M system C EcolC_3719 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] B Type II R-M system C Restriction endonucleases C DNA methyltransferases D EcolC_0326 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D EcolC_2786 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D EcolC_0444 DNA methylase N-4/N-6 domain protein K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D EcolC_1682 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] B Type III R-M system B Type IV R-M system # AToxin-antitoxin system (TA system) B Type I TA system C Hok-Sok D EcolC_0159 Hok/gef cell toxic protein K18920 hokA; protein HokA D EcolC_2239 Hok/gef cell toxic protein K18921 hokB; protein HokB D EcolC_2073 Hok/gef cell toxic protein K18919 hokC_D; protein HokC/D D EcolC_3639 Hok/gef cell toxic protein K18919 hokC_D; protein HokC/D D EcolC_3064 Hok/gef cell toxic protein K18922 hokE; protein HokE C SymE-SymR D EcolC_3720 Domain of unknown function DUF1813, HSP20-like protein K19048 symE; toxic protein SymE C Ldr-Rdl D EcolC_0177 conserved hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D D EcolC_2408 conserved hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D D EcolC_2409 conserved hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D D EcolC_2410 conserved hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D C TisB-IstR C Ibs-Sib C ShoB-OhsC C RalR-RalA B Type II TA system C MazF-MazE D EcolC_0930 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D EcolC_0929 transcriptional regulator/antitoxin, MazE K07172 mazE; antitoxin MazE C ChpB-ChpS C YhaV-PrlF D EcolC_0570 hypothetical protein K19155 yhaV; toxin YhaV [EC:3.1.-.-] D EcolC_0571 suppressor protein SohA K19156 prlF; antitoxin PrlF C RelE/StbE-RelB/StbD D EcolC_2072 addiction module toxin, RelE/StbE family K06218 relE; mRNA interferase RelE/StbE D EcolC_2071 addiction module antitoxin, RelB/DinJ family K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB C YafQ-dinJ D EcolC_3395 addiction module toxin, RelE/StbE family K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] D EcolC_3394 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J C YoeB-YefM C HipA-HipB D EcolC_2150 HipA N-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D EcolC_2149 transcriptional regulator, XRE family K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB C HicA-HicB D EcolC_2222 YcfA family protein K07339 hicA; mRNA interferase HicA [EC:3.1.-.-] D EcolC_2221 transcriptional regulator, XRE family K18843 hicB; antitoxin HicB C YafO-YafN D EcolC_3348 prevent-host-death family protein K19161 yafN; antitoxin YafN C Hha-TomB D EcolC_3156 Haemolysin expression modulating family protein K05839 hha; haemolysin expression modulating protein D EcolC_3155 conserved hypothetical protein K19162 tomB; hha toxicity modulator TomB C PspC-PspB D EcolC_2319 phage shock protein C, PspC K03973 pspC; phage shock protein C D EcolC_2320 phage shock protein B K03970 pspB; phage shock protein B C CcdB-CcdA C ParE-ParD C Doc-Phd C HigB-HigA D EcolC_0617 conserved hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D EcolC_0618 helix-turn-helix domain protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D EcolC_3133 plasmid maintenance system antidote protein, XRE family K21498 higA-1; antitoxin HigA-1 D EcolC_2180 plasmid maintenance system antidote protein, XRE family K21498 higA-1; antitoxin HigA-1 C MqsR-MqsA D EcolC_0675 conserved hypothetical protein K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin D EcolC_0676 transcriptional regulator, XRE family K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA C VapC-VapB C PezT-PezA C YobL-YobK C YokI-YokJ C YqcG-YqcF C YxiD-YxxD C FitB-FitA C BC_0920-BC_0921 C Type II TA system related factors D EcolC_3761 conserved hypothetical protein K19334 tabA; biofilm protein TabA D EcolC_2837 protein of unknown function DUF1471 K13650 mcbA; MqsR-controlled colanic acid and biofilm protein A D EcolC_2540 conserved hypothetical protein K12148 bssS; biofilm regulator BssS D EcolC_2806 putative receptor K19688 bssR; biofilm regulator BssR D EcolC_2489 protein of unknown function DUF1471 K12151 bhsA; multiple stress resistance protein BhsA D EcolC_3562 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D EcolC_0456 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D EcolC_0678 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D EcolC_0667 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D EcolC_1272 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] B Type III TA system C AbiQ system B Type IV TA system C YeeV-YeeU D EcolC_3446 protein of unknown function DUF1219 K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins D EcolC_3445 YagBYeeUYfjZ family protein K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins C CptA-CptB D EcolC_0813 protein of unknown function DUF1434 K19168 cptA; toxin CptA D EcolC_0812 protein of unknown function DUF339 K09159 cptB; antitoxin CptB B Type V TA system C GhoT-GhoS D EcolC_3899 putative inner membrane protein K18839 ghoT; toxin GhoT # ADNA phosphothiolation system B Sulfur modification proteins C EcolC_1147 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] B DNA phosphorothioation-dependent restriction proteins ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023