+F Repair protein KO
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DNA Repair and Recombination Proteins - Enterobacter hormaechei subsp. steigerwaltii
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LI62_10600 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LI62_07100 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E LI62_18255 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LI62_20270 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E LI62_10430 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D LI62_04220 nucleoside triphosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LI62_01045 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LI62_10600 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LI62_16630 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D LI62_07100 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D LI62_16625 alpha-ketoglutarate-dependent dioxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E LI62_18255 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LI62_21415 formamidopyrimidine-DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E LI62_16015 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E LI62_20270 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E LI62_01565 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E LI62_01070 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E LI62_07125 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E LI62_10430 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E LI62_09770 hypothetical protein K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
E LI62_16460 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E LI62_01750 endonuclease V K05982 nfi; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E LI62_19910 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E LI62_00980 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E LI62_17280 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E LI62_24670 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E LI62_02015 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E LI62_21035 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E LI62_07425 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E LI62_15325 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E LI62_09810 nucleotide excision repair endonuclease K05984 cho; excinuclease Cho [EC:3.1.25.-]
E LI62_01370 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LI62_24670 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E LI62_00980 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E LI62_17280 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F LI62_01680 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F LI62_01685 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F LI62_22515 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F LI62_00970 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F LI62_09160 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E LI62_19230 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E LI62_02550 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E LI62_19620 DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E LI62_15740 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E LI62_17900 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E LI62_05290 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
E LI62_14920 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D DNA polymerase III holoenzyme
E LI62_04660 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E LI62_00290 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E LI62_22110 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E LI62_06870 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E LI62_09085 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E LI62_04820 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E LI62_05655 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E LI62_03645 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
E LI62_06035 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
E LI62_14910 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DNA ligase
E LI62_00980 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E LI62_17280 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E LI62_01370 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LI62_02020 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E LI62_20780 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E LI62_012430 DNA modification methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E LI62_22880 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E LI62_15515 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E LI62_19565 recB; exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E LI62_19575 recC; exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E LI62_19560 recD; exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E LI62_19035 recA; recombinase A K03553 recA; recombination protein RecA
E LI62_14995 ruvA; ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E LI62_14990 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E LI62_15000 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E LI62_09450 crossover junction endodeoxyribonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E LI62_24240 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E LI62_02685 primosomal replication protein N K02686 priB; primosomal replication protein N
E LI62_05640 primosomal replication protein N'' K04067 priC; primosomal replication protein N''
E LI62_03565 primosomal protein DnaI K02317 dnaT; DNA replication protein DnaT
E LI62_17825 hypothetical protein K02317 dnaT; DNA replication protein DnaT
E LI62_15740 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E LI62_05150 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E LI62_05155 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E LI62_19035 recA; recombinase A K03553 recA; recombination protein RecA
E LI62_03730 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E LI62_00295 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
E LI62_00955 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E LI62_19910 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E LI62_18190 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E LI62_05665 recR; recombination protein RecR K06187 recR; recombination protein RecR
E LI62_18445 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E LI62_05140 recombination associated protein K03554 rdgC; recombination associated protein RdgC
E LI62_14995 ruvA; ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E LI62_14990 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E LI62_15000 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E LI62_16565 hypothetical protein K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E LI62_05150 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E LI62_05155 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E LI62_22135 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F LI62_16660 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F LI62_00300 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F LI62_14040 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F LI62_01760 DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
F LI62_05450 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F LI62_17855 recombinase RecT K07455 recT; recombination protein RecT
F LI62_19910 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F LI62_18190 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F LI62_05665 recR; recombination protein RecR K06187 recR; recombination protein RecR
F LI62_00980 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
F LI62_17280 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F LI62_22370 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F LI62_09945 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F LI62_08275 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F LI62_15740 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F LI62_01395 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F LI62_02015 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F LI62_21035 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F LI62_07425 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F LI62_14220 transcriptional regulator K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D LI62_04925 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D LI62_011720 membrane protein K03502 umuC; DNA polymerase V
D LI62_06255 DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V
D LI62_10685 DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V
D LI62_011715 protein impA' K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D LI62_10645 DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D LI62_20600 DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D LI62_19035 recA; recombinase A K03553 recA; recombination protein RecA
D LI62_01940 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D LI62_09445 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88]
D LI62_18445 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D LI62_04025 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D LI62_02020 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D LI62_20780 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D LI62_08895 damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D LI62_19030 recX; recombination regulator RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D LI62_00915 DNA helicase UvrD K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D LI62_01215 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D LI62_08490 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D LI62_07515 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D LI62_14730 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D LI62_04220 nucleoside triphosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LI62_01045 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D LI62_16670 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LI62_18920 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LI62_16675 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LI62_18925 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 29, 2025