+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Escherichia coli APEC O78 (APEC)
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ACRISPR-Cas system
B Universal Cas proteins
C APECO78_17375 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
C APECO78_17370 ssRNA endonuclease K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
D APECO78_17405 helicase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
C Subtype I-A factors
C Subtype I-B factors
C Subtype I-C factors
C Subtype I-D factors
C Subtype I-E factors
D APECO78_17400 hypothetical protein K19123 casA; CRISPR system Cascade subunit CasA
D APECO78_17395 hypothetical protein K19046 casB; CRISPR system Cascade subunit CasB
D APECO78_17390 hypothetical protein K19124 casC; CRISPR system Cascade subunit CasC
D APECO78_17385 hypothetical protein K19125 casD; CRISPR system Cascade subunit CasD
D APECO78_17380 hypothetical protein K19126 casE; CRISPR system Cascade subunit CasE
C Subtype I-F factors
C Subtype I-U factors
B Type II CRISPR-Cas system
C Type II signiture cas proteins
C Subtype II-A factors
C Subtype II-B factors
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
C Subtype III-U factors
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ARestriction and modification system (R-M system)
B Type I R-M system
C APECO78_16850 HsdR family type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C APECO78_16845 type I restriction-modification system, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C APECO78_16840 adenine-specific DNA-methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
C DNA methyltransferases
D APECO78_07950 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APECO78_20725 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APECO78_20130 methyltransferase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D APECO78_06265 DNA methylase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D APECO78_04775 putative methyltransferase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D APECO78_02525 methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D APECO78_13590 DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Type III R-M system
B Type IV R-M system
C APECO78_03155 phage protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
C APECO78_04790 phage protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
C APECO78_02540 putative endonuclease K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
C APECO78_02535 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
D APECO78_21595 small toxic polypeptide K18920 hokA; protein HokA
D APECO78_10810 small toxic polypeptide K18921 hokB; protein HokB
D APECO78_03530 regulatory protein for HokC K18919 hokC_D; protein HokC/D
D APECO78_11615 putative prophage maintenance protein K18919 hokC_D; protein HokC/D
D APECO78_06485 hypothetical protein K18922 hokE; protein HokE
D APECO78_17415 small toxic membrane polypeptide K18922 hokE; protein HokE
C SymE-SymR
C Ldr-Rdl
D APECO78_09955 hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
D APECO78_09960 hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
D APECO78_21485 hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
D APECO78_21490 hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
D APECO78_21495 hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
D APECO78_21500 hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
C TisB-IstR
D APECO78_22220 toxic peptide TisB K19148 tisB; small toxic protein TisB
C Ibs-Sib
C ShoB-OhsC
D APECO78_16545 toxic membrane protein K19154 shoB; small toxic protein ShoB
C RalR-RalA
B Type II TA system
C MazF-MazE
D APECO78_17525 toxin ChpA K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D APECO78_17530 antitoxin MazE K07172 mazE; antitoxin MazE
C ChpB-ChpS
D APECO78_02100 toxin ChpB K18841 chpB; mRNA interferase ChpB [EC:3.1.-.-]
D APECO78_02095 antitoxin ChpS K18842 chpS; antitoxin ChpS
C YhaV-PrlF
D APECO78_19485 hypothetical protein K19155 yhaV; toxin YhaV [EC:3.1.-.-]
D APECO78_19480 regulator PrlF K19156 prlF; antitoxin PrlF
C RelE/StbE-RelB/StbD
C YafQ-dinJ
C YoeB-YefM
D APECO78_13820 Toxin yoeB K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D APECO78_13825 antitoxin YefM K19159 yefM; antitoxin YefM
C HipA-HipB
D APECO78_11285 regulator with hipB K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D APECO78_11290 antitoxin HipB K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
C HicA-HicB
D APECO78_10900 DNA-binding transcriptional regulator K18843 hicB; antitoxin HicB
C YafO-YafN
C Hha-TomB
D APECO78_05820 modulator of gene expression, with H-NS K05839 hha; haemolysin expression modulating protein
D APECO78_02505 hemolysin expression modulating protein K05839 hha; haemolysin expression modulating protein
D APECO78_05825 Hha toxicity attenuator K19162 tomB; hha toxicity modulator TomB
C PspC-PspB
D APECO78_10405 DNA-binding transcriptional activator PspC K03973 pspC; phage shock protein C
D APECO78_10400 phage shock protein B K03970 pspB; phage shock protein B
C CcdB-CcdA
C ParE-ParD
D APECO78_14140 plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4
D APECO78_14135 transcriptional regulator K07746 parD1_3_4; antitoxin ParD1/3/4
C Doc-Phd
C HigB-HigA
D APECO78_19220 hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D APECO78_17155 hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D APECO78_17150 HTH-type transcriptional regulator ygjM K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D APECO78_19215 DNA-binding transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D APECO78_05935 DNA-binding transcriptional regulator K21498 higA-1; antitoxin HigA-1
D APECO78_11110 DNA-binding transcriptional regulator K21498 higA-1; antitoxin HigA-1
C MqsR-MqsA
D APECO78_18890 hypothetical protein K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin
D APECO78_18885 HTH-type transcriptional regulator ygiT K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
C VapC-VapB
D APECO78_16080 plasmid maintenance protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D APECO78_16085 putative toxin of the MvpT-MvpA toxin-antitoxin system K18829 mvpT; antitoxin VapB
C PezT-PezA
D APECO78_00915 putative zeta toxin; poison-antidote element K16214 pezT; UDP-N-acetylglucosamine kinase [EC:2.7.1.176]
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
C BC_0920-BC_0921
C Type II TA system related factors
D APECO78_02225 hypothetical protein K19334 tabA; biofilm protein TabA
D APECO78_07700 hypothetical protein K13650 mcbA; MqsR-controlled colanic acid and biofilm protein A
D APECO78_09265 biofilm formation regulatory protein BssS K12148 bssS; biofilm regulator BssS
D APECO78_07850 biofilm regulator BssR K19688 bssR; biofilm regulator BssR
D APECO78_09520 hypothetical protein K12151 bhsA; multiple stress resistance protein BhsA
D APECO78_03925 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D APECO78_20070 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D APECO78_18875 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D APECO78_18970 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D APECO78_15745 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
D APECO78_18195 hypothetical protein K19168 cptA; toxin CptA
D APECO78_18200 hypothetical protein K09159 cptB; antitoxin CptB
B Type V TA system
C GhoT-GhoS
D APECO78_01575 hypothetical protein K18839 ghoT; toxin GhoT
D APECO78_01570 hypothetical protein K18840 ghoS; antitoxin GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C APECO78_16380 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023