+D Messenger RNA Biogenesis KO #

  Prokaryotic Defense System - Escherichia coli O145:H28 RM13514 (EHEC)

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ACRISPR-Cas system B Universal Cas proteins C ECRM13514_3610 ygbT; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 C ECRM13514_3609 ygbF; CRISPR-associated protein, Cas2 K09951 cas2; CRISPR-associated protein Cas2 B Type I CRISPR-Cas system C Type I signiture cas proteins D ECRM13514_3616 ygbB; CRISPR-associated helicase Cas3, protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] C Subtype I-A factors C Subtype I-B factors C Subtype I-C factors C Subtype I-D factors C Subtype I-E factors D ECRM13514_3614 cse1; CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA D ECRM13514_3613 cse2; CRISPR-associated protein, Cse2 family K19046 casB; CRISPR system Cascade subunit CasB D ECRM13514_3612 cse4; CRISPR-associated protein, Cse4 family K19124 casC; CRISPR system Cascade subunit CasC D ECRM13514_3611 cse3; CRISPR-associated protein, Cse3 family K19126 casE; CRISPR system Cascade subunit CasE C Subtype I-F factors C Subtype I-U factors B Type II CRISPR-Cas system C Type II signiture cas proteins C Subtype II-A factors C Subtype II-B factors B Type III CRISPR-Cas system C Type III signiture cas proteins C Subtype III-A factors C Subtype III-B factors C Subtype III-U factors # ARestriction and modification system (R-M system) B Type I R-M system C ECRM13514_2427 Type I restriction-modification system, restriction subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C ECRM13514_2430 Type I restriction-modification system, specificity subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C ECRM13514_2431 Type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] B Type II R-M system C Restriction endonucleases C DNA methyltransferases D ECRM13514_4331 dam; Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D ECRM13514_4215 yhdJ; Adenine-specific methyltransferase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D ECRM13514_2047 DNA methyl transferase, phage-associated K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D ECRM13514_5730 Adenine-specific methyltransferase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D ECRM13514_4994 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D ECRM13514_5820 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D ECRM13514_2517 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] B Type III R-M system B Type IV R-M system C ECRM13514_2869 putative Dnase K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] C ECRM13514_5223 putative DNase K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] # AToxin-antitoxin system (TA system) B Type I TA system C Hok-Sok D ECRM13514_3114 hypothetical protein K18920 hokA; protein HokA D ECRM13514_1231 hypothetical protein K18920 hokA; protein HokA D ECRM13514_2466 hypothetical protein K18920 hokA; protein HokA D ECRM13514_6031 hypothetical protein K18920 hokA; protein HokA D ECRM13514_4555 small toxic polypeptide K18920 hokA; protein HokA D ECRM13514_0601 HokE protein K18922 hokE; protein HokE C SymE-SymR C Ldr-Rdl D ECRM13514_1583 hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D D ECRM13514_4527 hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D C TisB-IstR C Ibs-Sib C ShoB-OhsC C RalR-RalA D ECRM13514_1776 ydaC; Phage protein K19780 ralA; antisense regulator of RalR protein B Type II TA system C MazF-MazE D ECRM13514_3641 chpA; Programmed cell death toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D ECRM13514_3642 chpR; Programmed cell death antitoxin K07172 mazE; antitoxin MazE C ChpB-ChpS D ECRM13514_5489 chpB; Programmed cell death toxin ChpB K18841 chpB; mRNA interferase ChpB [EC:3.1.-.-] D ECRM13514_4359 pemK; Programmed cell death toxin PemK K18841 chpB; mRNA interferase ChpB [EC:3.1.-.-] D ECRM13514_5488 chpS; Programmed cell death antitoxin ChpS K18842 chpS; antitoxin ChpS D ECRM13514_4358 hypothetical protein K18842 chpS; antitoxin ChpS C YhaV-PrlF D ECRM13514_4091 yhaV; Uncharacterized protein yhaV K19155 yhaV; toxin YhaV [EC:3.1.-.-] D ECRM13514_4090 sohA; SohA suppressor protein K19156 prlF; antitoxin PrlF C RelE/StbE-RelB/StbD D ECRM13514_5500 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB C YafQ-dinJ C YoeB-YefM D ECRM13514_2737 YoeB toxin protein K19158 yoeB; toxin YoeB [EC:3.1.-.-] D ECRM13514_2738 YefM protein (antitoxin to YoeB) K19159 yefM; antitoxin YefM C HipA-HipB D ECRM13514_1885 hipB; HipB protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB C HicA-HicB D ECRM13514_1961 hypothetical protein K18843 hicB; antitoxin HicB C YafO-YafN C Hha-TomB D ECRM13514_0383 hha; hemolysin expression modulating protein K05839 hha; haemolysin expression modulating protein D ECRM13514_5362 Putative hemolysin expression modulating protein K05839 hha; haemolysin expression modulating protein D ECRM13514_0382 ybaJ; Putative cytoplasmic protein K19162 tomB; hha toxicity modulator TomB C PspC-PspB D ECRM13514_1733 pspC; Phage shock protein C K03973 pspC; phage shock protein C D ECRM13514_1732 pspB; Phage shock protein B K03970 pspB; phage shock protein B C CcdB-CcdA D ECRM13514_0051 ccdB; CcdB toxin protein K19163 ccdB; toxin CcdB D ECRM13514_0050 ccdA; CcdA protein (antitoxin to CcdB) K19164 ccdA; antitoxin CcdA C ParE-ParD C Doc-Phd C HigB-HigA D ECRM13514_3566 hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D ECRM13514_4045 hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D ECRM13514_3564 Putative cytoplasmic protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D ECRM13514_4044 ygjM; Putative cytoplasmic protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D ECRM13514_2601 hypothetical protein K21498 higA-1; antitoxin HigA-1 D ECRM13514_0360 ybaQ; HigA protein (antitoxin to HigB) K21498 higA-1; antitoxin HigA-1 D ECRM13514_1925 yddM; HigA protein (antitoxin to HigB) K21498 higA-1; antitoxin HigA-1 C MqsR-MqsA D ECRM13514_3923 ygiU; Toxin mRNA interferase YgiU K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin D ECRM13514_3922 ygiT; Antitoxin YgiT K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA C VapC-VapB D ECRM13514_5788 vagD; plasmid maintenance protein VagD K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D ECRM13514_5789 vagC; plasmid maintenance protein VagC K18829 mvpT; antitoxin VapB C PezT-PezA D ECRM13514_5156 putative enolase K16214 pezT; UDP-N-acetylglucosamine kinase [EC:2.7.1.176] C YobL-YobK C YokI-YokJ C YqcG-YqcF C YxiD-YxxD C FitB-FitA C BC_0920-BC_0921 C Type II TA system related factors D ECRM13514_5517 yjgK; Protein YjgK, linked to biofilm formation K19334 tabA; biofilm protein TabA D ECRM13514_0883 hypothetical protein K13650 mcbA; MqsR-controlled colanic acid and biofilm protein A D ECRM13514_1350 bssS; Putative cytoplasmic protein K12148 bssS; biofilm regulator BssS D ECRM13514_0913 bssR; Biofilm regulator bssR K19688 bssR; biofilm regulator BssR D ECRM13514_1405 ycfR; Putative outer membrane protein K12151 bhsA; multiple stress resistance protein BhsA D ECRM13514_0099 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D ECRM13514_4203 mreB; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D ECRM13514_3920 parC; Topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D ECRM13514_3931 parE; Topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D ECRM13514_3225 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] B Type III TA system C AbiQ system B Type IV TA system C YeeV-YeeU D ECRM13514_1312 yeeV; YeeV toxin protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins D ECRM13514_3968 yeeV_3; YeeV toxin protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins D ECRM13514_2647 yeeV_2; YeeV toxin protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins D ECRM13514_2646 yeeU_2; YeeU protein (antitoxin to YeeV) K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins D ECRM13514_3969 yeeU_3; YeeU protein (antitoxin to YeeV) K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins D ECRM13514_1311 yeeU; YeeU protein (antitoxin to YeeV) K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins C CptA-CptB D ECRM13514_3754 Putative inner membrane protein K19168 cptA; toxin CptA D ECRM13514_3755 ygfY; YgfY K09159 cptB; antitoxin CptB B Type V TA system C GhoT-GhoS D ECRM13514_5345 hypothetical protein K18839 ghoT; toxin GhoT D ECRM13514_5344 hypothetical protein K18840 ghoS; antitoxin GhoS # ADNA phosphothiolation system B Sulfur modification proteins C ECRM13514_3362 yfhO; Cysteine desulfurase, IscS subfamily K04487 iscS; cysteine desulfurase [EC:2.8.1.7] B DNA phosphorothioation-dependent restriction proteins ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023