+E Transcription factors KO
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Transcription Factors - Ectobacillus sp. JY-23
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D MUG87_19340 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D MUG87_18785 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D MUG87_03115 helix-turn-helix domain-containing protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
C DeoR family
D MUG87_11400 spoIIID; sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D MUG87_10665 DeoR/GlpR family DNA-binding transcription regulator K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D MUG87_08035 helix-turn-helix transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D MUG87_00605 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D MUG87_09650 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D MUG87_14955 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D MUG87_13880 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D MUG87_14715 LacI family DNA-binding transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
C GntR family
D MUG87_10530 GntR family transcriptional regulator K24966 gamR; GntR family transcriptional regulator, amino sugar utilization regulator
D MUG87_06945 phnF; phosphonate metabolism transcriptional regulator PhnF K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D MUG87_05710 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D MUG87_19430 GntR family transcriptional regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D MUG87_00210 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D MUG87_01135 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D MUG87_01330 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D MUG87_09210 TetR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
C Lrp/AsnC family
D MUG87_17615 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D MUG87_08870 gerE; spore germination transcription factor GerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
D MUG87_08965 LuxR C-terminal-related transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D MUG87_16700 HTH-type transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D MUG87_00400 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D MUG87_11680 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D MUG87_05490 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D MUG87_15805 MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D MUG87_05075 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D MUG87_00930 MerR family transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
C Fur family
D MUG87_07110 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D MUG87_07955 transcriptional repressor K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D MUG87_15215 perR; peroxide-responsive transcriptional repressor PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
C Rrf2 family
D MUG87_08465 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D MUG87_06915 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D MUG87_15405 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D MUG87_18485 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D MUG87_18980 metalloregulator ArsR/SmtB family transcription factor K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D MUG87_00740 helix-turn-helix domain-containing protein K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D MUG87_00105 helix-turn-helix domain-containing protein K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D MUG87_18830 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D MUG87_02320 helix-turn-helix transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D MUG87_17865 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D MUG87_07630 mntR; transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D MUG87_04810 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D MUG87_11085 helix-turn-helix domain-containing protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D MUG87_11575 helix-turn-helix domain-containing protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D MUG87_15825 tetratricopeptide repeat protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D MUG87_19005 helix-turn-helix domain-containing protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D MUG87_12825 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D MUG87_17915 hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA
D MUG87_00190 helix-turn-helix domain-containing protein K02647 cdaR; carbohydrate diacid regulator
D MUG87_02765 sigma 54-interacting transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D MUG87_11565 sigma 54-interacting transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D MUG87_13830 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D MUG87_05880 codY; GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor
D MUG87_18775 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D MUG87_13695 antitoxin endoai K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D MUG87_06935 transcription antiterminator K03480 glcT; transcriptional antiterminator
C Others
D MUG87_18990 metal-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MUG87_03310 PucR family transcriptional regulator ligand-binding domain-containing protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D MUG87_12775 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D MUG87_12865 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D MUG87_12510 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MUG87_12520 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MUG87_05455 transcription factor YdeB K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D MUG87_10615 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D MUG87_16660 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D MUG87_07485 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism
D MUG87_08135 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D MUG87_16215 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D MUG87_16235 tenI; thiazole tautomerase TenI K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D MUG87_13070 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D MUG87_10780 hypothetical protein K05311 cggR; central glycolytic genes regulator
D MUG87_06220 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D MUG87_11995 RsfA family transcriptional regulator K06314 rsfA; prespore-specific regulator
D MUG87_00945 transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D MUG87_19105 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D MUG87_09310 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D MUG87_05400 hutP; hut operon transcriptional regulator HutP K09683 hutP; hut operon positive regulatory protein
D MUG87_11200 competence protein ComK K02250 comK; competence protein ComK
D MUG87_16820 competence protein ComK K02250 comK; competence protein ComK
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0