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Transcription Machinery - Escherichia coli O152:H28 SE11 (commensal)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E ECSE_3570 RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E ECSE_4274 RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E ECSE_4275 RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E ECSE_3931 RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E ECSE_3349 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E ECSE_2993 RNA polymerase sigma factor S RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E ECSE_2861 RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E ECSE_3729 RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor
E ECSE_3486 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
E ECSE_2153 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E ECSE_0059 RNA helicase K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E ECSE_3455 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
E ECSE_0438 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
E ECSE_4269 transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
E ECSE_3508 stringent starvation protein A K03599 sspA; stringent starvation protein A
E ECSE_3507 stringent starvation protein B K03600 sspB; stringent starvation protein B
E ECSE_2860 sigma-E factor negative regulator RseA K03597 rseA; sigma-E factor negative regulatory protein RseA
E ECSE_2859 sigma-E factor negative regulator RseB K03598 rseB; sigma-E factor negative regulatory protein RseB
E ECSE_2858 sigma E factor regulator RseC K03803 rseC; sigma-E factor negative regulatory protein RseC
D Transcription elongation factors
E ECSE_0145 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
E ECSE_3465 transcription elongation factor K03624 greA; transcription elongation factor GreA
E ECSE_3671 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E ECSE_4065 transcription termination factor Rho K03628 rho; transcription termination factor Rho
E ECSE_0188 conserved hypothetical protein K19000 rof; Rho-binding antiterminator
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024