+F Repair protein KO #

  DNA Repair and Recombination Proteins - Enterococcus faecalis DENG1

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DENG_01767 phrB; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DENG_01005 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DENG_02136 mpg; Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E DENG_02644 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DENG_01297 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E DENG_01304 Helicase, putative K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D DENG_01764 mutt; MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DENG_00830 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DENG_01279 mutt; MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DENG_02640 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DENG_00040 dut; Deoxyuridine 5`-triphosphate nucleotidohydrolase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DENG_00260 adaA; Ada regulatory protein, putative K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D DENG_00261 adaB; Methylated-DNA--protein-cysteine S-methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DENG_01767 phrB; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DENG_01005 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DENG_00687 dpo; Phage SPO1 DNA polymerase-related protein, putative K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E DENG_02136 mpg; Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E DENG_02644 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DENG_00262 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DENG_02935 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DENG_00927 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E DENG_01297 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DENG_02678 xthA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E DENG_01913 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E DENG_01866 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E DENG_00771 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E DENG_00926 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E DENG_00816 uvrA; Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A E DENG_00815 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E DENG_01568 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E DENG_01929 uvrC; Endo/excinuclease amino terminal domain protein K03703 uvrC; excinuclease ABC subunit C E DENG_00988 uvrD; Helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DENG_00770 uvrD; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DENG_00926 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E DENG_00771 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F DENG_03123 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F DENG_03122 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F DENG_00210 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F DENG_01284 rpoE; putative DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F DENG_03013 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F DENG_00236 mfd; Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DENG_03058 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS E DENG_01566 mutS2; MutS2 protein K07456 mutS2; DNA mismatch repair protein MutS2 E DENG_02860 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E DENG_03057 mutL; DNA mismatch repair protein HexB K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E DENG_01110 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E DENG_01111 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E DENG_01177 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E DENG_02326 polC; DNA polymerase III polC-type 1 K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E DENG_00002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DENG_02405 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E DENG_02706 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E DENG_02679 dnaQ; Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DENG_02725 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E DENG_00771 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E DENG_00988 uvrD; Helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DENG_00770 uvrD; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DENG_00009 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DENG_02597 recD; Helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E DENG_03064 recA; Protein RecA K03553 recA; recombination protein RecA E DENG_00067 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DENG_00068 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DENG_03012 priA; Primosomal protein n' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E DENG_02630 sbcC; Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E DENG_02631 sbcD; Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E DENG_03064 recA; Protein RecA K03553 recA; recombination protein RecA E DENG_00041 sms; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E DENG_00004 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E DENG_02995 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DENG_01866 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DENG_02364 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E DENG_02710 recR; Recombination protein recR K06187 recR; recombination protein RecR E DENG_01116 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E DENG_01598 recU; Recombination protein U, putative K03700 recU; recombination protein U E DENG_01289 recU; Holliday junction resolvase recU K03700 recU; recombination protein U E DENG_00067 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DENG_00068 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E DENG_01249 ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E DENG_01248 ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E DENG_02630 sbcC; Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E DENG_02631 sbcD; Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DENG_00006 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DENG_00005 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F DENG_00886 gyrB; gyrB-like protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F DENG_01822 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F DENG_01717 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DENG_01053 recT; Recombinase, phage RecT family protein K07455 recT; recombination protein RecT F DENG_01866 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DENG_02364 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F DENG_02710 recR; Recombination protein recR K06187 recR; recombination protein RecR F DENG_00771 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F DENG_01712 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F DENG_02418 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F DENG_00816 uvrA; Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A F DENG_00815 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DENG_02699 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D DENG_01215 umuC; ImpB/MucB/SamB family protein K03502 umuC; DNA polymerase V C Other SOS response factors D DENG_03064 recA; Protein RecA K03553 recA; recombination protein RecA D DENG_01747 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D DENG_01116 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DENG_00009 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DENG_02645 recX; Regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D DENG_02321 dinG; DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D DENG_01764 mutt; MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DENG_00830 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DENG_01279 mutt; MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DENG_02640 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DENG_00040 dut; Deoxyuridine 5`-triphosphate nucleotidohydrolase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DENG_00460 nrdA; Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DENG_00459 nrdB; Ribonucleoside-diphosphate reductase 2, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D DENG_01534 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024