+E	Transcription factors	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Factors - Enterococcus faecium DO</h2>
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A<b>Eukaryotic type</b>
B  Basic leucine zipper (bZIP)
C    AP-1(-like) components, Jun
C    AP-1(-like) components, Fos
C    AP-1(-like) components, Maf
C    AP-1(-like) components, NF-E2
C    AP-1(-like) components, Fungal regulators
C    AP-1(-like) components, CRE-BP/ATF
C    CREB
C    C/EBP-like factors
C    bZIP/PAR
C    Plant bZIP factors
C    ZIP only
B  Basic helix-loop-helix (bHLH)
C    Ubiquitous (class A) factors
C    Myogenic transcription factors
C    Achaete-Scute
C    Tal/Twist/Atonal/Hen, Lymphoid factors
C    Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C    Tal/Twist/Atonal/Hen, HEN
C    Tal/Twist/Atonal/Hen, Mesp
C    Tal/Twist/Atonal/Hen, Atonal
C    Tal/Twist/Atonal/Hen, Pancreatic factors
C    Hairy, Hairy/E(SPL)
C    Hairy, Fungal regulators
C    Factors with PAS domain
C    Yabby
C    INO
C    HLH domain only
B  Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C    Ubiquitous bHLH-ZIP factors
C    Cell cycle controlling factors, Myc
C    Cell cycle controlling factors, Mad/Max
C    Other bHLH-ZIP factors
B  Other basic domains
C    NF-1
C    RF-X
C    AP-2 (bHSH)
B  Zinc finger
C    Cys4 thyroid hormone receptor-like
C    Cys4 hepatocyte nuclear factor 4-like
C    Cys4 estrogen receptor-like
C    Cys4 nerve growth factor IB-like
C    Cys4 Fushi tarazu-F1-like
C    Cys4 germ cell nuclear factor
C    Cys4 Knirps/DAX1-like
C    Cys4 GATA-factors
C    Cys2His2 SP/KLF family and related proteins
C    Cys2His2 GLI-like
C    Cys2His2 Snail
C    Cys2His2 BTB-ZF factors
C    Cys2His2 BED
C    Cys2His2 PRDM
C    Cys2His2 metabolic regulators in fungi
C    Cys2His2 others
C    Cys2HisCys zinc factors
C    Cys3His zinc factors
C    Cys2CysHis zinc factors
C    CXXC CpG-binding proteins
D      HMPREF0351_11823 DNA (cytosine-5-)-methyltransferase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
C    Cys6 metabolic regulators in fungi
C    Other zinc fingers
B  Helix-turn-helix
C    Homeo domain ANTP: HOXL
C    Homeo domain ANTP: NKL
C    Homeo domain Paired-related
C    Homeo domain LIM
C    Homeo domain POU
C    Homeo domain SINE
C    Homeo domain ZF
C    Homeo domain CUT
C    Homeo domain PROS
C    Homeo domain TALE
C    Homeo domain other
C    Fork head/winged helix developmental regulators
C    Fork head/winged helix tissue-specific regulators
C    Fork head/winged helix cell cycle-controlling factors, E2F
C    Fork head/winged helix cell cycle-controlling factors, DP
C    Fork head/winged helix other regulators
C    Heat shock factors
C    Tryptophan clusters Myb, Myb-factors
C    Tryptophan clusters Myb, Myb-like factors
C    Tryptophan clusters Ets-type
C    Tryptophan clusters interferon-regulating factors
C    TEA domain
C    ARID
B  beta-Scaffold factors with minor groove contacts
C    RHR (Rel homology region) Rel/Ankyrin
C    RHR (Rel homology region) Ankyrin only
C    RHR (Rel homology region) NF-AT
C    STAT
C    p53
C    MADS-box regulators of differentiation, MEF-2
C    MADS-box regulators of differentiation, Homeotic genes
C    MADS-box regulators of differentiation, Yeast regulators
C    MADS-box responders to external signals
C    SAND domain-containing proteins
C    TATA-binding proteins
C    HMG SOX
C    HMG TCF-1
C    HMG2-related
C    UBF
C    Other HMG box factors
C    Heteromeric CCAAT factors
C    Grainyhead
C    Cold-shock domain factors, DbpA-like
C    Cold-shock domain factors, YB-1/DbpB-like
C    Cold-shock domain factors, FRG Y2-like
C    Runt
C    MYRF
B  Other transcription factors
C    HMGI(Y)
C    NUPR
E        Line #4
C    Pocket domain Rb
C    Pocket domain CBP
C    T-box
C    DMRT
C    LRRFIP
C    TCP
C    AP2/ERF
C    WRKY
C    LOB
C    Copper-fist proteins fungal regulators
C    Others
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A<b>Prokaryotic type</b>
B  Helix-turn-helix
C    AraC family
D      HMPREF0351_11938 AraC family response regulator	K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein 
D      HMPREF0351_10493 AraC family transcriptional regulator	K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein 
D      HMPREF0351_12630 AraC family transcriptional regulator DNA-binding subunit	K13653 K13653; AraC family transcriptional regulator 
D      HMPREF0351_12997 AraC family response regulator	K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] 
C    LysR family
D      HMPREF0351_10438 LysR family transcriptional regulator	K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon 
D      HMPREF0351_10567 LysR family transcriptional regulator	K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon 
C    DeoR family
D      HMPREF0351_10029 lacR; lactose PTS family porter repressor	K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor 
D      HMPREF0351_11050 DeoR family transcriptional regulator	K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor 
D      HMPREF0351_11613 fruR; DeoR family transcriptional regulator	K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor 
C    LacI family
D      HMPREF0351_10037 transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      HMPREF0351_12002 ccpA; catabolite control protein A	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      HMPREF0351_11700 galR2; LacI family transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      HMPREF0351_10415 LacI family transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      HMPREF0351_10453 rbsR; ribose transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      HMPREF0351_10636 purR; LacI family transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      HMPREF0351_11599 purR2; LacI family transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      HMPREF0351_11801 scrR; LacI family transcriptional regulator	K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor 
D      HMPREF0351_12487 LacI family transcriptional regulator	K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor 
C    GntR family
D      HMPREF0351_12336 araR; GntR family transcriptional regulator	K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor 
D      HMPREF0351_12500 rliB; GntR family transcriptional regulator	K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor 
D      HMPREF0351_10139 transcriptional regulator	K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor 
D      HMPREF0351_11059 GntR family transcriptional regulator	K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization 
D      HMPREF0351_12037 GntR family transcriptional regulator	K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator 
D      HMPREF0351_12951 GntR family transcriptional regulator	K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator 
D      HMPREF0351_12898 GntR family transcriptional regulator	K03710 K03710; GntR family transcriptional regulator 
D      HMPREF0351_12914 transcriptional regulator	K03710 K03710; GntR family transcriptional regulator 
D      HMPREF0351_12785 transcriptional regulator	K03710 K03710; GntR family transcriptional regulator 
D      HMPREF0351_12787 GntR family transcriptional regulator	K03710 K03710; GntR family transcriptional regulator 
D      HMPREF0351_10628 GntR family transcriptional regulator	K03710 K03710; GntR family transcriptional regulator 
D      HMPREF0351_10328 GntR family transcriptional regulator	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex 
C    TetR/AcrR family
D      HMPREF0351_10515 transcriptional regulator	K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon 
C    Lrp/AsnC family
C    LuxR family
C    MarR family
D      HMPREF0351_11804 MarR family transcriptional regulator	K21454 tcaR; MarR family transcriptional regulator, teicoplanin-associated locus regulator 
D      HMPREF0351_11444 marR2; MarR family transcriptional regulator	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator 
C    MerR family
D      HMPREF0351_10717 glnR; glutamate--ammonia ligase repressor	K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor 
D      HMPREF0351_11767 MerR family transcriptional regulator	K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator 
C    Fur family
D      HMPREF0351_11091 fur; ferric (Fe) uptake regulator	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
D      HMPREF0351_11985 zurR; Fur family transcriptional regulator	K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator 
D      HMPREF0351_11315 fur2; Fur family transcriptional regulator	K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator 
C    IclR family
D      HMPREF0351_10217 IclR family transcriptional regulator	K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor 
C    CRP/FNR family
D      HMPREF0351_10406 rcfA; CRP/FNR family transcriptional regulator	K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein 
D      HMPREF0351_11695 crp; Crp family transcriptional regulator	K21828 arcR; CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator 
C    Rrf2 family
C    ArsR family
D      HMPREF0351_11987 czrA; ArsR family transcriptional regulator	K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor 
C    XRE family
C    PadR family
D      HMPREF0351_10425 transcriptional regulator	K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator 
D      HMPREF0351_12615 padR; PadR family transcriptional regulator	K26741 ladR; PadR family transcriptional regulator, multidrug transcriptional repressor LadR 
D      HMPREF0351_10440 transcriptional regulator	K10947 K10947; PadR family transcriptional regulator 
D      HMPREF0351_11063 PadR family transcriptional regulator	K10947 K10947; PadR family transcriptional regulator 
C    Other families
D      HMPREF0351_10804 sirR; metal-dependent transcriptional regulator	K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator 
D      HMPREF0351_12671 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon transcriptional regulator	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] 
D      HMPREF0351_11020 transcriptional regulator	K20391 plcR; HTH-type transcriptional regulator, pleiotropic regulator of extracellular virulence genes 
D      HMPREF0351_12581 purR3; LacI family transcriptional regulator	K09685 purR; HTH-type transcriptional regulator, purine operon repressor 
D      HMPREF0351_10286 NtrC family transcriptional regulator	K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator 
D      HMPREF0351_12885 transcriptional antiterminator	K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator 
D      HMPREF0351_12244 sigma-54 dependent DNA-binding transcriptional regulator	K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator 
D      HMPREF0351_10702 transcriptional antiterminator	K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator 
D      HMPREF0351_11796 PTS system transcriptional activator	K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator 
D      HMPREF0351_11649 cdaR; sugar diacid utilization regulator	K02647 cdaR; carbohydrate diacid regulator 
D      HMPREF0351_12158 redox-sensitive transcriptional regulator	K01926 rex; redox-sensing transcriptional repressor 
D      HMPREF0351_12187 redox-sensing transcriptional regulator	K01926 rex; redox-sensing transcriptional repressor 
D      HMPREF0351_11142 codY; CodY family transcriptional regulator	K03706 codY; transcriptional pleiotropic repressor 
D      HMPREF0351_11480 Cro/CI transcriptional regulator	K07727 K07727; putative transcriptional regulator 
B  Ribbon-helix-helix
C    CopG family
C    Other families
D      HMPREF0351_13002 DNA-damage-inducible protein	K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB 
B  Other transcription factors
C    BglG family
D      HMPREF0351_11994 bglG; transcriptional antiterminator	K03488 licT; beta-glucoside operon transcriptional antiterminator 
D      HMPREF0351_12923 bglG2; transcriptional antiterminator BglG	K03488 licT; beta-glucoside operon transcriptional antiterminator 
D      HMPREF0351_10623 licT; BglG family transcriptional antiterminator	K03488 licT; beta-glucoside operon transcriptional antiterminator 
D      HMPREF0351_11009 transcriptional antiterminator	K03488 licT; beta-glucoside operon transcriptional antiterminator 
D      HMPREF0351_12625 sacT; BglG family transcriptional antiterminator	K26932 sacT; sacPA operon transcriptional antiterminator 
D      HMPREF0351_12314 mtlR; mannitol operon transcriptional antiterminator	K03483 mtlR; mannitol operon transcriptional activator 
D      HMPREF0351_11033 BglG family transcriptional antiterminator	K03483 mtlR; mannitol operon transcriptional activator 
D      HMPREF0351_10361 PTS family porter component IIA	K03483 mtlR; mannitol operon transcriptional activator 
D      HMPREF0351_11044 BglG family transcriptional antiterminator	K02538 manR; mannose operon transcriptional activator 
D      HMPREF0351_11532 sorbitol operon transcription regulator	K03491 licR; probable licABCH operon transcriptional regulator 
D      HMPREF0351_12515 BglG family transcriptional antiterminator	K03491 licR; probable licABCH operon transcriptional regulator 
C    Others
D      HMPREF0351_12694 spo0J; stage 0 DNA-binding protein spoOJ	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      HMPREF0351_11687 argR3; arginine repressor	K03402 argR; transcriptional regulator of arginine metabolism 
D      HMPREF0351_10783 argR2; arginine repressor	K03402 argR; transcriptional regulator of arginine metabolism 
D      HMPREF0351_10508 argR; arginine metabolism transcriptional regulator	K03402 argR; transcriptional regulator of arginine metabolism 
D      HMPREF0351_11654 hrcA; heat shock transcriptional repressor HrcA	K03705 hrcA; heat-inducible transcriptional repressor 
D      HMPREF0351_12686 ctsR; transcriptional regulator CtsR	K03708 ctsR; transcriptional regulator of stress and heat shock response 
D      HMPREF0351_12014 pspC; stress-responsive transcriptional regulator	K03973 pspC; phage shock protein C 
D      HMPREF0351_12068 cggR; central glycolytic genes regulator	K05311 cggR; central glycolytic genes regulator 
D      HMPREF0351_11348 pyrR; pyrimidine operon attenuation protein	K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] 
D      HMPREF0351_11558 nrdR; NrdR family transcriptional regulator	K07738 nrdR; transcriptional repressor NrdR 
D      HMPREF0351_10788 mraZ; cell division protein MraZ	K03925 mraZ; transcriptional regulator MraZ 
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#Last updated: June 7, 2024
#<br>Classification taken and modified from <a href="http://www.gene-regulation.com/pub/databases.html#transfac">TRANSFAC 7.0</a>