+F Repair protein KO #

  DNA Repair and Recombination Proteins - Enterococcus faecium DO

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D HMPREF0351_10564 ada; methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E HMPREF0351_10675 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HMPREF0351_12443 alkA; DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HMPREF0351_10952 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HMPREF0351_11321 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E HMPREF0351_11256 dinG; DNA-directed DNA polymerase III epsilon subunit K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D HMPREF0351_12080 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF0351_12260 MutT/Nudix family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF0351_12607 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D HMPREF0351_10564 ada; methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HMPREF0351_12997 AraC family response regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C BER (base exicision repair) D DNA glycosylases E HMPREF0351_10675 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HMPREF0351_10764 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HMPREF0351_12443 alkA; DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HMPREF0351_10952 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HMPREF0351_11839 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E HMPREF0351_11561 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E HMPREF0351_11321 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E HMPREF0351_10681 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E HMPREF0351_12000 nfo; deoxyribonuclease IV (phage-T(4)-induced) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E HMPREF0351_11306 recJ; recombination protein J K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E HMPREF0351_11608 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E HMPREF0351_11562 polA; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E HMPREF0351_11644 uvrA; excision endonuclease subunit UvrA K03701 uvrA; excinuclease ABC subunit A E HMPREF0351_11645 uvrB; excision endonuclease subunit UvrB K03702 uvrB; excinuclease ABC subunit B E HMPREF0351_10967 uvrC; excision endonuclease subunit UvrC K03703 uvrC; excinuclease ABC subunit C E HMPREF0351_12101 uvrC2; excision endonuclease subunit UvrC K03703 uvrC; excinuclease ABC subunit C E HMPREF0351_10466 uvrD; excision endonuclease subunit UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF0351_10989 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF0351_10397 superfamily I DNA/RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF0351_11609 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF0351_11562 polA; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E HMPREF0351_11608 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F HMPREF0351_12666 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F HMPREF0351_12665 rpoC; DNA-directed RNA polymerase subunit beta prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HMPREF0351_10083 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F HMPREF0351_12075 rpoE2; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F HMPREF0351_12571 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F HMPREF0351_12552 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E HMPREF0351_10135 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E HMPREF0351_12103 mutS3; MutS family DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 E HMPREF0351_10390 mutS2; DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E HMPREF0351_10136 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E HMPREF0351_10779 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E HMPREF0351_10780 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E HMPREF0351_11000 dnaE; DNA-directed DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HMPREF0351_11678 polC; DNA-directed DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E HMPREF0351_10002 dnaN; DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E HMPREF0351_11247 holA; DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E HMPREF0351_10741 holB; DNA-directed DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E HMPREF0351_10680 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HMPREF0351_10736 dnaZX; DNA-directed DNA polymerase III gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E HMPREF0351_11608 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HMPREF0351_10466 uvrD; excision endonuclease subunit UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF0351_10989 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF0351_10397 superfamily I DNA/RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF0351_11609 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF0351_10008 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HMPREF0351_13107 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HMPREF0351_12409 recD; exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E HMPREF0351_12589 recA; recombination protein A K03553 recA; recombination protein RecA E HMPREF0351_10141 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E HMPREF0351_10142 ruvA; crossover junction endoribonuclease subunit A K03550 ruvA; holliday junction DNA helicase RuvA E HMPREF0351_10143 ruvB; crossover junction endoribonuclease subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HMPREF0351_12570 priB; primosomal replication protein n K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E HMPREF0351_12427 sbcC; exodeoxyribonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E HMPREF0351_12428 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E HMPREF0351_12589 recA; recombination protein A K03553 recA; recombination protein RecA E HMPREF0351_12606 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E HMPREF0351_10004 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E HMPREF0351_10093 recG; DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HMPREF0351_11306 recJ; recombination protein J K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E HMPREF0351_11974 recO; recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E HMPREF0351_10738 recR; recombination protein RecR K06187 recR; recombination protein RecR E HMPREF0351_10784 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E HMPREF0351_11324 recU; recombination protein RecU K03700 recU; recombination protein U E HMPREF0351_10141 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E HMPREF0351_10142 ruvA; crossover junction endoribonuclease subunit A K03550 ruvA; holliday junction DNA helicase RuvA E HMPREF0351_10143 ruvB; crossover junction endoribonuclease subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E HMPREF0351_11280 addA; ATP-dependent deoxyribonuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E HMPREF0351_11279 addB; ATP-dependent deoxyribonuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E HMPREF0351_12427 sbcC; exodeoxyribonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E HMPREF0351_12428 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HMPREF0351_10006 gyrA; DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HMPREF0351_10005 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HMPREF0351_11137 topA; DNA topoisomerase TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F HMPREF0351_11110 hup; histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HMPREF0351_11306 recJ; recombination protein J K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HMPREF0351_11974 recO; recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F HMPREF0351_10738 recR; recombination protein RecR K06187 recR; recombination protein RecR F HMPREF0351_11608 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F HMPREF0351_11232 recQ2; ATP-dependent helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HMPREF0351_11105 recQ; ATP-dependent helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HMPREF0351_11644 uvrA; excision endonuclease subunit UvrA K03701 uvrA; excinuclease ABC subunit A F HMPREF0351_11645 uvrB; excision endonuclease subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D HMPREF0351_10745 dinB; DNA-directed DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D HMPREF0351_10489 dinB2; Y family DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D HMPREF0351_12820 dinB2-2; Y family DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D HMPREF0351_12771 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V C Other SOS response factors D HMPREF0351_12589 recA; recombination protein A K03553 recA; recombination protein RecA D HMPREF0351_11309 lexA; S24 family repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D HMPREF0351_10784 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D HMPREF0351_10008 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HMPREF0351_13107 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D HMPREF0351_10951 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D HMPREF0351_11897 dnaQ; DNA-directed DNA polymerase III epsilon subunit K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D HMPREF0351_12080 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF0351_12260 MutT/Nudix family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF0351_12607 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HMPREF0351_12378 nrdE; ribonuceloside diphosphate reductase, subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HMPREF0351_12379 nrdF; ribonucleoside-diphosphate reductase, subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D HMPREF0351_12223 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024