+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Eptesicus fuscus (big brown bat)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 103302496 RNMT; mRNA cap guanine-N7 methyltransferase isoform X1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 103291791 RNGTT; mRNA-capping enzyme isoform X4 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 103305165 CDK7; cyclin-dependent kinase 7 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 103295496 CMTR1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 isoform X1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 103284647 CMTR2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 129148331 RAMAC; RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 103286407 NCBP1; nuclear cap-binding protein subunit 1 isoform X1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 103303538 NCBP2; nuclear cap-binding protein subunit 2 isoform X2 K12883 NCBP2; nuclear cap-binding protein subunit 2
E 129150641 NCBP2L; nuclear cap-binding protein subunit 2-like K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 103295846 NUDT21; cleavage and polyadenylation specificity factor subunit 5 isoform X1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 103303321 CPSF7; cleavage and polyadenylation specificity factor subunit 7 isoform X2 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 103292571 CPSF6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 103302287 CLP1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 103293644 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X2 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 103302640 CPSF1; cleavage and polyadenylation specificity factor subunit 1 isoform X3 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 103292245 CPSF2; cleavage and polyadenylation specificity factor subunit 2 isoform X1 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 103305601 CPSF3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 103285962 CPSF4; cleavage and polyadenylation specificity factor subunit 4 isoform X4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 103299437 CPSF4L; putative cleavage and polyadenylation specificity factor subunit 4-like protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 103284965 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 isoform X2 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 103301212 WDR33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 103295186 WDR82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 103287049 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit isoform X2 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 103290927 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 103297381 serine/threonine-protein phosphatase PP1-gamma catalytic subunit B-like isoform X2 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 103305499 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 103295272 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 103301722 LOW QUALITY PROTEIN: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 103296796 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 103285765 CSTF1; cleavage stimulation factor subunit 1 isoform X1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 103296370 CSTF2T; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 103299698 CSTF2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 103291045 CSTF3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 103301373 SYMPK; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 103285612 SNRPB; small nuclear ribonucleoprotein-associated proteins B and B' isoform X1 K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 103300333 SNRPD3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 103297511 SNRPE; small nuclear ribonucleoprotein E isoform X2 K11097 SNRPE; small nuclear ribonucleoprotein E
E 103288986 SNRPF; small nuclear ribonucleoprotein F isoform X1 K11098 SNRPF; small nuclear ribonucleoprotein F
E 103295519 small nuclear ribonucleoprotein F-like K11098 SNRPF; small nuclear ribonucleoprotein F
E 103291450 SNRPG; small nuclear ribonucleoprotein G isoform X1 K11099 SNRPG; small nuclear ribonucleoprotein G
E 114229175 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 114234207 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 114231058 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 129152080 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 114227427 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 114231556 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 103294729 LSM10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 103291633 LSM11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 103292245 CPSF2; cleavage and polyadenylation specificity factor subunit 2 isoform X1 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 103305601 CPSF3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 103296370 CSTF2T; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 103299698 CSTF2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 103301373 SYMPK; symplekin K06100 SYMPK; symplekin
E 103294579 SLBP; histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 103293592 CASP8AP2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 103291647 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 103284902 transcription elongation factor SPT4-A-like K15171 SUPT4H1; transcription elongation factor SPT4
E 103284323 SUPT5H; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 103302748 METTL3; N6-adenosine-methyltransferase catalytic subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 103298141 METTL14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 103304674 METTL4; N(6)-adenine-specific methyltransferase METTL4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 103291782 METTL16; RNA N6-adenosine-methyltransferase METTL16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 103297932 WTAP; pre-mRNA-splicing regulator WTAP isoform X2 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 103292340 VIRMA; protein virilizer homolog K22910 VIRMA; protein virilizer
E 103291163 RBM15; RNA-binding protein 15 isoform X1 K13190 RBM15; RNA-binding protein 15
E 103298475 RBM15B; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 103295600 ZC3H13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 103293720 CBLL1; E3 ubiquitin-protein ligase Hakai isoform X3 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
E 114227398 CBLL2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBLL2 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 103298050 PAPOLA; poly(A) polymerase alpha isoform X3 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 103299171 PAPOLB; poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 103305379 PAPOLG; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 103305226 TENT2; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 103303745 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 103289338 BARD1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 103288343 RBM26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 103295889 FTO; alpha-ketoglutarate-dependent dioxygenase FTO isoform X1 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 103299354 ALKBH5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 103295415 TARDBP; TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 103293258 DHX40; probable ATP-dependent RNA helicase DHX40 isoform X1 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 103298605 KIN; DNA/RNA-binding protein KIN17 isoform X1 K13102 KIN; DNA/RNA-binding protein KIN17
D 103286128 METTL22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 103287735 TENT5A; terminal nucleotidyltransferase 5A isoform X1 K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 103291902 TENT5B; terminal nucleotidyltransferase 5B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 103291234 TENT5C; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 103298555 TENT5D; terminal nucleotidyltransferase 5D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 103292226 ZC3H14; zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 103286000 SRRT; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 103296532 RBM8A; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 103284007 MAGOH; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 103285088 MAGOHB; protein mago nashi homolog 2 isoform X1 K12877 MAGOH; protein mago nashi
E 103298348 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 103300482 DDX39B; spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 103298370 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 103295918 CCDC174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 103288988 CASC3; protein CASC3 K14323 CASC3; protein CASC3
E 103304102 SAP18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 103303808 PNN; pinin isoform X1 K13114 PNN; pinin
E 103301518 ACIN1; apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 103290513 RNPS1; RNA-binding protein with serine-rich domain 1 isoform X2 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 103291939 SRRM1; serine/arginine repetitive matrix protein 1 isoform X5 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 103303127 THOC1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 103284186 THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 103301905 THOC2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 103291535 THOC3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 103298348 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 103286864 THOC5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 103286175 THOC6; THO complex subunit 6 homolog isoform X1 K13175 THOC6; THO complex subunit 6
E 103290380 THOC7; THO complex subunit 7 homolog isoform X1 K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 103288218 PCID2; PCI domain-containing protein 2 isoform X4 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 114234657 LOW QUALITY PROTEIN: 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 114234249 SEM1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 103287673 ENY2; transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 103304159 centrin-2 K10840 CETN2; centrin-2
E 103303951 CETN2; centrin-2 K10840 CETN2; centrin-2
E 103305254 CETN3; centrin-3 isoform X2 K16466 CETN3; centrin-3
E 103289762 MCM3AP; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 103290033 TPR; nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 103285771 RAE1; mRNA export factor RAE1 K14298 RAE1; mRNA export factor
E 103295570 SEC13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 103288958 NUP37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 103298296 NUP85; nuclear pore complex protein Nup85 isoform X1 K14304 NUP85; nuclear pore complex protein Nup85
E 103302351 NUP43; nucleoporin Nup43 isoform X2 K14305 NUP43; nuclear pore complex protein Nup43
E 103298683 NUP50; nuclear pore complex protein Nup50 isoform X1 K14295 NUP50; nuclear pore complex protein Nup50
E 103287928 NUP54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 103297613 NUP62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 103299867 NUP88; nuclear pore complex protein Nup88 isoform X8 K14318 NUP88; nuclear pore complex protein Nup88
E 103295840 NUP93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 103293654 NUP98; nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 103292570 NUP107; nuclear pore complex protein Nup107 isoform X1 K14301 NUP107; nuclear pore complex protein Nup107
E 103301634 NUP133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 103296178 NUP188; nucleoporin NUP188 K14311 NUP188; nuclear pore complex protein Nup188
E 103290159 NUP153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 103298811 NUP155; nuclear pore complex protein Nup155 isoform X1 K14312 NUP155; nuclear pore complex protein Nup155
E 103290820 NUP160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 103283466 NUP35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 103294116 NUP205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 103299025 NUP210L; nuclear pore membrane glycoprotein 210-like isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 103301575 NUP210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 103296012 NUP214; nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 103286032 nuclear envelope pore membrane protein POM 121C isoform X1 K14316 POM121; nuclear pore complex protein Nup121
E 103304025 POM121L2; POM121-like protein 2 K14316 POM121; nuclear pore complex protein Nup121
E 103296730 NUP58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 103291996 NUP42; nucleoporin NUP42 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 103284003 NDC1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 103302535 SEH1L; nucleoporin SEH1 isoform X2 K14299 SEH1; nucleoporin SEH1
E 103297413 E3 SUMO-protein ligase RanBP2 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 103300664 SENP2; sentrin-specific protease 2 isoform X2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 103285345 AAAS; aladin K14320 AAAS; aladin
E 129149338 aladin-like K14320 AAAS; aladin
E 103305254 CETN3; centrin-3 isoform X2 K16466 CETN3; centrin-3
E 103296047 GLE1; mRNA export factor GLE1 K18723 GLE1; nucleoporin GLE1
E 103303729 NXF1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 103299724 nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 103302184 NXF3; nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 103302189 LOW QUALITY PROTEIN: nuclear RNA export factor 2-like K14284 NXF; nuclear RNA export factor
E 103299725 nuclear RNA export factor 2-like K14284 NXF; nuclear RNA export factor
E 103285718 NXT1; NTF2-related export protein 1 K14285 NXT1_2; NTF2-related export protein 1/2
E 103288242 NTF2-related export protein 1-like K14285 NXT1_2; NTF2-related export protein 1/2
E 103288954 NTF2-related export protein 1-like K14285 NXT1_2; NTF2-related export protein 1/2
E 103303099 NXT2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 103300349 RAN; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 103283774 ANP32A; acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X2 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 103286402 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 103296908 TNFSF13; tumor necrosis factor ligand superfamily member 13 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 103295030 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 103297383 ELAVL2; ELAV-like protein 2 isoform X2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 103301101 ELAVL3; ELAV-like protein 3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 103284035 ELAVL4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 103287127 FAF2; FAS-associated factor 2 isoform X1 K18726 FAF2; FAS-associated factor 2
E 103286453 VCP; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 103283762 VCPKMT; protein N-lysine methyltransferase METTL21D isoform X2 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 103301020 TNPO2; transportin-2 isoform X3 K18727 TNPO2; transportin-2
E 103305373 XPO1; exportin-1 K14290 XPO1; exportin-1
E 103295086 XPO7; exportin-7 K18460 XPO7; exportin-7
E 103291557 RANBP17; ran-binding protein 17 K24115 RANBP17; Ran-binding protein 17
E 103288829 RANGAP1; ran GTPase-activating protein 1 isoform X3 K14319 RANGAP1; Ran GTPase-activating protein 1
E 103297030 TAF15; TATA-binding protein-associated factor 2N K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 103283198 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 103287830 EIF4E; eukaryotic translation initiation factor 4E isoform X2 K03259 EIF4E; translation initiation factor 4E
E 103290240 EIF4E1B; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 103295147 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 103296905 EIF4A1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 103300649 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 isoform X2 K03260 EIF4G; translation initiation factor 4G
E 103292087 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X4 K03260 EIF4G; translation initiation factor 4G
E 103294688 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 103285332 EIF4B; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 103286050 EIF4H; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 103290263 EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 103289498 EIF4EBP2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 103285354 EIF4EBP3; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 103286828 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 103290045 ANGEL2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 103283546 ANGEL1; protein angel homolog 1 isoform X2 K18729 ANGEL; protein angel
E 103286760 FXR1; RNA-binding protein FXR1 isoform X3 K15516 FMR; fragile X mental retardation protein
E 103296903 FXR2; RNA-binding protein FXR2 isoform X2 K15516 FMR; fragile X mental retardation protein
E 103302021 FMR1; fragile X messenger ribonucleoprotein 1 isoform X5 K15516 FMR; fragile X mental retardation protein
E 103302980 LOW QUALITY PROTEIN: RNA-binding protein FXR1-like K15516 FMR; fragile X mental retardation protein
E 103291606 CYFIP2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 103304009 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 103295784 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 103294578 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 129148145 transforming acidic coiled-coil-containing protein 3-like K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 129148146 LOW QUALITY PROTEIN: transforming acidic coiled-coil-containing protein 3-like K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 103291541 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103300069 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103294532 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103303556 CPEB1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103296431 DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 103283441 GIGYF2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 103285993 GIGYF1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 103290366 PABPC4L; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 103294762 PABPC4; polyadenylate-binding protein 4 isoform X4 K13126 PABPC; polyadenylate-binding protein
E 103302424 PABPC5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 103304072 PABPC1L; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 114229477 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 103304084 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 103292309 PABPC1; polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 129148067 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 103299738 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 103295222 PAIP1; polyadenylate-binding protein-interacting protein 1 isoform X1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 103286189 PAIP2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 103291437 PAIP2B; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 103300454 SKIC2; SKI2 subunit of superkiller complex protein isoform X1 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 103302574 DEAF1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 103299289 MCTS1; malignant T-cell-amplified sequence 1 isoform X1 K07575 MCTS; malignant T-cell-amplified sequence
E 103300834 malignant T-cell-amplified sequence 1-like K07575 MCTS; malignant T-cell-amplified sequence
E 103287018 DENR; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 103285073 APOBEC1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 103296372 A1CF; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 103292402 PYM1; partner of Y14 and mago isoform X1 K14294 WIBG; partner of Y14 and mago
E 103285366 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 103283288 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 129150697 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 103291659 MSI2; RNA-binding protein Musashi homolog 2 isoform X2 K14411 MSI; RNA-binding protein Musashi
E 103294294 DAZAP1; DAZ-associated protein 1 isoform X3 K14411 MSI; RNA-binding protein Musashi
E 103287255 MSI1; RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 103305428 HBS1L; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 103298068 PELO; protein pelota homolog K06965 PELO; protein pelota
E 103301511 polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 103284753 PABPN1L; LOW QUALITY PROTEIN: embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 103284655 DDX19A; ATP-dependent RNA helicase DDX19A isoform X3 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 103284656 LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 103286934 DDX25; ATP-dependent RNA helicase DDX25 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 103294996 XAB2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 103292397 SARNP; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 103291874 RCC1; regulator of chromosome condensation isoform X1 K11493 RCC1; regulator of chromosome condensation
E 103294986 LARP6; la-related protein 6 K18733 LARP6; la-related protein 6
E 103286037 PURA; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 129151487 PURB; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 103298621 POLDIP3; polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 103297513 ZC3H11A; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 103303372 LENG8; leukocyte receptor cluster member 8 K23802 LENG8; SAC3 family protein LENG8/THP3
E 103287536 PATL2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 103289615 LOW QUALITY PROTEIN: eukaryotic peptide chain release factor subunit 1-like K03265 ETF1; peptide chain release factor subunit 1
E 103289916 ETF1; eukaryotic peptide chain release factor subunit 1 isoform X1 K03265 ETF1; peptide chain release factor subunit 1
E 103286107 GSPT1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 103301312 GSPT2; eukaryotic peptide chain release factor GTP-binding subunit ERF3B K03267 ERF3; peptide chain release factor subunit 3
E 103299528 UPF1; regulator of nonsense transcripts 1 isoform X2 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 103294021 UPF2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 103288297 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 103299982 UPF3B; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 103286718 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 103290347 PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 103293769 PPP2R1B; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 103304255 PPP2R1A; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 103285340 PPP2R2B; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 103295052 PPP2R2A; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X2 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 103288691 PPP2R2D; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform isoform X3 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 103294548 PPP2R2C; protein phosphatase 2, regulatory subunit B, gamma K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 103301982 PPP2R3C; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 103296345 PPP2R3A; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 103304576 PPP2R3B; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 103283666 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 103290054 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 103296652 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 103298034 PPP2R5C; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X4 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 103302063 PPP2R5B; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 103286080 SMG1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 103298867 SMG5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 103291776 SMG6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 103290018 SMG7; nonsense-mediated mRNA decay factor SMG7 isoform X3 K14409 SMG7; protein SMG7
E 103291637 SMG8; nonsense-mediated mRNA decay factor SMG8 K18734 SMG8; protein SMG8
E 103301413 SMG9; nonsense-mediated mRNA decay factor SMG9 isoform X3 K18735 SMG9; protein SMG9
E 103283441 GIGYF2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 103285993 GIGYF1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 103297894 SECISBP2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 103287411 SECISBP2L; selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 103297681 DHX34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 103288859 GTPBP1; GTP-binding protein 1 isoform X2 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 103289138 PUM3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 103287563 MYO5A; unconventional myosin-Va K10357 MYO5; myosin V
E 103287562 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V
E 103292169 MYO5B; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 103285188 BICD1; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 129147025 BICD2; protein bicaudal D homolog 2 isoform X2 K18739 BICD; protein bicaudal D
E 103287512 EXD1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 103299154 ACTB; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 103298235 ACTG1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 103303356 MBP; myelin basic protein K17269 MBP; myelin basic protein
E 103292588 VIM; vimentin K07606 VIM; vimentin
E 103295841 metallothionein-1E-like K14739 MT1_2; metallothionein 1/2
E 103295842 metallothionein-1A-like isoform X2 K14739 MT1_2; metallothionein 1/2
E 103295843 metallothionein-2A K14739 MT1_2; metallothionein 1/2
E 114226695 metallothionein-2A-like K14739 MT1_2; metallothionein 1/2
E 103292358 MYC; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 103299527 GDF1; embryonic growth/differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 103296281 TBX6; LOW QUALITY PROTEIN: T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 103288674 NANOS1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 103285919 ZBP1; Z-DNA-binding protein 1 K12965 ZBP1; Z-DNA binding protein 1
E 103284143 FUBP1; far upstream element-binding protein 1 isoform X16 K13210 FUBP; far upstream element-binding protein
E 103296170 FUBP3; far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 103294375 KHSRP; far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 103286041 EEF1A1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 103303654 LOW QUALITY PROTEIN: elongation factor 1-alpha 1-like K03231 EEF1A; elongation factor 1-alpha
E 103302186 LOW QUALITY PROTEIN: elongation factor 1-alpha 1-like K03231 EEF1A; elongation factor 1-alpha
E 103300248 EEF1A2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 103303746 EEF1G; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 103291839 HNRNPA2B1; heterogeneous nuclear ribonucleoproteins A2/B1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 103284788 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoproteins A2/B1-like K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 103298923 HAX1; HCLS1-associated protein X-1 isoform X1 K16220 HAX1; HCLS1-associated protein X-1
E 103289251 AGFG1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 103293940 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X3 K17597 STAU; double-stranded RNA-binding protein Staufen
E 103285731 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 103294481 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 103294315 PTBP1; polypyrimidine tract-binding protein 1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 129149812 polypyrimidine tract-binding protein 1-like K13218 PTBP1; polypyrimidine tract-binding protein 1
E 103291541 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103300069 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103294532 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103303556 CPEB1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 103286760 FXR1; RNA-binding protein FXR1 isoform X3 K15516 FMR; fragile X mental retardation protein
E 103296903 FXR2; RNA-binding protein FXR2 isoform X2 K15516 FMR; fragile X mental retardation protein
E 103302021 FMR1; fragile X messenger ribonucleoprotein 1 isoform X5 K15516 FMR; fragile X mental retardation protein
E 103302980 LOW QUALITY PROTEIN: RNA-binding protein FXR1-like K15516 FMR; fragile X mental retardation protein
E 103291606 CYFIP2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 103304009 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 129149226 poly(rC)-binding protein 2-like K13162 PCBP2; poly(rC)-binding protein 2
E 103285348 PCBP2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 103289768 PCBP3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 103298402 PCBP4; poly(rC)-binding protein 4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 103290888 CAPRIN1; caprin-1 isoform X2 K18743 CAPRIN1; caprin-1
E 103285181 CAPRIN2; caprin-2 isoform X3 K18744 CAPRIN2; caprin-2
E 103294841 YBX1; LOW QUALITY PROTEIN: Y-box-binding protein 1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 103301571 XRN1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 103299758 AGO2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 103294721 AGO1; protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 103294874 AGO4; protein argonaute-4 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 103294875 protein argonaute-3 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 103283198 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 103287830 EIF4E; eukaryotic translation initiation factor 4E isoform X2 K03259 EIF4E; translation initiation factor 4E
E 103290240 EIF4E1B; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 103299528 UPF1; regulator of nonsense transcripts 1 isoform X2 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 103296431 DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 103293730 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 103292136 MEX3C; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 103304899 MEX3B; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 103299010 MEX3A; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 103294422 MEX3D; RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 103301759 FASTK; fas-activated serine/threonine kinase isoform X2 K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 103284482 LSM14A; protein LSM14 homolog A isoform X1 K18749 LSM14; protein LSM14
E 103300228 LSM14B; protein LSM14 homolog B isoform X3 K18749 LSM14; protein LSM14
E 103291454 PCBP1; poly(rC)-binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 129149226 poly(rC)-binding protein 2-like K13162 PCBP2; poly(rC)-binding protein 2
E 103285348 PCBP2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 103294841 YBX1; LOW QUALITY PROTEIN: Y-box-binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 103300089 LIMD1; LIM domain-containing protein 1 isoform X1 K16682 AJUBA; LIM domain-containing protein
E 103301524 AJUBA; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 103284761 WTIP; Wilms tumor protein 1-interacting protein isoform X1 K16682 AJUBA; LIM domain-containing protein
E 103285073 APOBEC1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 103289074 DNA dC->dU-editing enzyme APOBEC-3G-like K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 103289073 DNA dC->dU-editing enzyme APOBEC-3D K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 129149857 DNA dC->dU-editing enzyme APOBEC-3G-like isoform X1 K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 103291191 MOV10; helicase MOV-10 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 103291947 PNRC2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 103305184 TNPO1; transportin-1 K18752 TNPO1; transportin-1
E 103286080 SMG1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 103298867 SMG5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 103291776 SMG6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 103290018 SMG7; nonsense-mediated mRNA decay factor SMG7 isoform X3 K14409 SMG7; protein SMG7
E 103284326 ZFP36; mRNA decay activator protein ZFP36 K15308 TTP; tristetraprolin
E 103305437 ZFP36L2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 103283633 ZFP36L1; mRNA decay activator protein ZFP36L1 isoform X2 K18753 ZFP36L; butyrate response factor
E 103292058 LIN28A; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 103297371 LIN28B; protein lin-28 homolog B K18754 LIN28; protein lin-28
E 103294564 HTT; huntingtin K04533 HD; huntingtin
E 103285180 IPO8; importin-8 isoform X1 K18755 IPO8; importin-8
E 103289553 BICC1; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 103285366 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 103283288 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 129150697 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 103300989 PRKACA; cAMP-dependent protein kinase catalytic subunit alpha isoform X2 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 103284158 PRKACB; cAMP-dependent protein kinase catalytic subunit beta K04345 PKA; protein kinase A [EC:2.7.11.11]
E 103295781 LARP1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 103287736 LARP1B; la-related protein 1B isoform X2 K18757 LARP1; la-related protein 1
E 103300801 ATXN2L; ataxin-2-like protein isoform X8 K23625 ATXN2_2L; ataxin 2/2L
E 103287056 ATXN2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 103288719 DCP2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 103290462 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 103296723 DCP1B; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 103290257 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 114232907 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 103300529 LSM2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 103295950 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 129149747 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 129149761 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 103292650 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 103299546 LSM4; U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 103291421 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 129151263 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 103288193 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 103294414 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 103295933 LSM8; LSM8 homolog, U6 small nuclear RNA associated isoform X2 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 103290962 KLC2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 103296647 KLC4; kinesin light chain 4 isoform X1 K10407 KLC; kinesin light chain
E 103301389 KLC3; kinesin light chain 3 isoform X1 K10407 KLC; kinesin light chain
E 103301801 KLC1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 103287563 MYO5A; unconventional myosin-Va K10357 MYO5; myosin V
E 103287562 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V
E 103292169 MYO5B; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 103285264 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 103289293 TUBA4A; tubulin alpha-4A chain K07374 TUBA; tubulin alpha
E 103289950 tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 103292767 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 103286986 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 103289292 tubulin alpha-1D chain K07374 TUBA; tubulin alpha
E 103287202 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 103285518 TUBA1C; tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 129149800 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 103298570 TUBAL3; tubulin alpha chain-like 3 K07374 TUBA; tubulin alpha
E 103291541 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103300069 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103294532 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103303556 CPEB1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103295784 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 103294578 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 129148145 transforming acidic coiled-coil-containing protein 3-like K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 129148146 LOW QUALITY PROTEIN: transforming acidic coiled-coil-containing protein 3-like K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 103298252 TNRC6C; trinucleotide repeat-containing gene 6C protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 103296213 TNRC6A; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 103288843 TNRC6B; trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 103284798 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 103298776 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 103303681 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 103294117 CNOT4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 103301656 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 103287918 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 103290308 CNOT7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 103295785 CNOT8; CCR4-NOT transcription complex subunit 8 isoform X4 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 103284484 GARRE1; granule associated Rac and RHOG effector protein 1 K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 103283193 DIS3L2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 103292427 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 103301263 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X2 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 103288054 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 103289743 BTG3; protein BTG3 K14443 TOB; protein Tob/BTG
E 103297518 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 103297047 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 103303174 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 103288826 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 103286828 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 103292675 PATL1; protein PAT1 homolog 1 isoform X2 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 103300191 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 103284595 EDC4; enhancer of mRNA-decapping protein 4 isoform X4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 103301368 NANOS2; nanos homolog 2 K18760 NANOS2; protein nanos 2
E 103300996 NANOS3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 103294021 UPF2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 103288297 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 103299982 UPF3B; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 103304327 TRIM21; E3 ubiquitin-protein ligase TRIM21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 103297267 TRIM71; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 103303730 POLR2G; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 103305673 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 103302383 protein ZAR1-like K18762 ZAR1; zygote arrest protein 1
E 129149543 protein ZAR1-like K18762 ZAR1; zygote arrest protein 1
E 114231054 ZAR1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 103291867 YTHDF2; LOW QUALITY PROTEIN: YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 103300246 YTHDF1; YTH domain-containing family protein 1 isoform X2 K20102 YTHDF; YTH domain-containing family protein
E 103287605 YTHDF3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 103288603 TIAL1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 103291518 TIA1; cytotoxic granule associated RNA binding protein TIA1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 103290366 PABPC4L; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 103294762 PABPC4; polyadenylate-binding protein 4 isoform X4 K13126 PABPC; polyadenylate-binding protein
E 103302424 PABPC5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 103304072 PABPC1L; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 114229477 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 103304084 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 103292309 PABPC1; polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 129148067 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 103299738 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 103293940 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X3 K17597 STAU; double-stranded RNA-binding protein Staufen
E 103285731 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 103286760 FXR1; RNA-binding protein FXR1 isoform X3 K15516 FMR; fragile X mental retardation protein
E 103296903 FXR2; RNA-binding protein FXR2 isoform X2 K15516 FMR; fragile X mental retardation protein
E 103302021 FMR1; fragile X messenger ribonucleoprotein 1 isoform X5 K15516 FMR; fragile X mental retardation protein
E 103302980 LOW QUALITY PROTEIN: RNA-binding protein FXR1-like K15516 FMR; fragile X mental retardation protein
E 103285919 ZBP1; Z-DNA-binding protein 1 K12965 ZBP1; Z-DNA binding protein 1
E 103295030 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 103295769 G3BP1; ras GTPase-activating protein-binding protein 1 isoform X2 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 103287934 G3BP2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 103304340 EIF2A; eukaryotic translation initiation factor 2A isoform X1 K15026 EIF2A; translation initiation factor 2A
E 103299202 EIF3B; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 103295147 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 103296905 EIF4A1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 103298370 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 103285332 EIF4B; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 103300649 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 isoform X2 K03260 EIF4G; translation initiation factor 4G
E 103292087 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X4 K03260 EIF4G; translation initiation factor 4G
E 103294688 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 103291913 RPS6KA1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 103297815 RPS6KA3; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 114228252 RPS6KA6; ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 103299834 RPS6KA2; ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 103301650 RACK1; receptor of activated protein C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 103295968 TRAF2; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 103303729 NXF1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 103299724 nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 103302184 NXF3; nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 103302189 LOW QUALITY PROTEIN: nuclear RNA export factor 2-like K14284 NXF; nuclear RNA export factor
E 103299725 nuclear RNA export factor 2-like K14284 NXF; nuclear RNA export factor
E 103301287 HDAC6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 103289630 TDRD3; tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
E 103293892 LARP4B; la-related protein 4B K18763 LARP4; la-related protein 4
E 103285526 LARP4; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 103290462 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 103296723 DCP1B; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 103288719 DCP2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 103293730 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 103300191 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 103284595 EDC4; enhancer of mRNA-decapping protein 4 isoform X4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 103292675 PATL1; protein PAT1 homolog 1 isoform X2 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 103290257 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 114232907 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 103300529 LSM2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 103295950 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 129149747 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 129149761 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 103292650 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 103299546 LSM4; U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 103291421 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 129151263 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 103288193 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 103294414 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 103295933 LSM8; LSM8 homolog, U6 small nuclear RNA associated isoform X2 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 103301571 XRN1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 103285712 XRN2; 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 103299790 NUDT16; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 129147024 DCPS; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 103293124 HELZ; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 103288639 EXOSC1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
E 103296017 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 103286415 EXOSC3; exosome complex component RRP40 isoform X1 K03681 RRP40; exosome complex component RRP40
E 103302660 EXOSC4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 103284286 EXOSC5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 103284659 EXOSC6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 103297637 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 103303071 EXOSC8; exosome complex component RRP43 isoform X2 K12586 RRP43; exosome complex component RRP43
E 103301643 EXOSC9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 103288363 DIS3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 103283795 DIS3L; DIS3-like exonuclease 1 isoform X1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 103295321 EXOSC10; exosome component 10 isoform X1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 103291473 C1D; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 103301250 nuclear nucleic acid-binding protein C1D-like K12592 C1D; exosome complex protein LRP1
E 103303913 nuclear nucleic acid-binding protein C1D-like K12592 C1D; exosome complex protein LRP1
E 103284407 MPHOSPH6; M-phase phosphoprotein 6 isoform X1 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 103290898 probable ATP-dependent RNA helicase DDX60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
E 103290882 probable ATP-dependent RNA helicase DDX60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 103305104 TENT4A; terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 103295863 TENT4B; terminal nucleotidyltransferase 4B isoform X2 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 103286426 ZCCHC7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 103303103 MTREX; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 103300454 SKIC2; SKI2 subunit of superkiller complex protein isoform X1 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 103288766 SKIC3; SKI3 subunit of superkiller complex protein K12600 SKI3; superkiller protein 3
E 103303828 SKIC8; SKI8 subunit of superkiller complex protein K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 103301656 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 103287918 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 103284798 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 103298776 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 103303681 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 103294117 CNOT4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 103290308 CNOT7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 103295785 CNOT8; CCR4-NOT transcription complex subunit 8 isoform X4 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 103289314 CNOT9; CCR4-NOT transcription complex subunit 9 isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 103297251 CNOT10; CCR4-NOT transcription complex subunit 10 isoform X2 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 103292427 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 103301263 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X2 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 103286099 PARN; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 103297928 PNLDC1; poly(A)-specific ribonuclease PNLDC1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 103286778 DHX36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 103288054 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 103289743 BTG3; protein BTG3 K14443 TOB; protein Tob/BTG
E 103297518 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 103297047 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 103303174 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 103288826 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 103286945 CSF2; granulocyte-macrophage colony-stimulating factor K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 103290399 NOCT; nocturnin isoform X3 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 103290296 ERI1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 129147071 ERI2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 129147024 DCPS; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 103290403 PDE12; 2',5'-phosphodiesterase 12 isoform X1 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 103303769 IREB2; iron-responsive element-binding protein 2 isoform X1 K22416 IREB2; iron-responsive element-binding protein 2
E 103293124 HELZ; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 103300294 HELZ2; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 103292235 NRDE2; nuclear exosome regulator NRDE2 isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 103283722 SAMD4A; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 103284330 SAMD4B; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 103289192 FOCAD; focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 103302733 ribonuclease pancreatic K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 103302756 RNASE2; non-secretory ribonuclease K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 103304773 ribonuclease pancreatic-like isoform X2 K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 129149164 ribonuclease pancreatic K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 103302732 ribonuclease 4-like K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 103303509 ribonuclease 4 K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 114229640 ribonuclease 4-like K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 129149163 ribonuclease 4-like K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 103299631 ribonuclease 4-like K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 103302731 ribonuclease K6-like K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 103302755 ribonuclease K3-like K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 103302739 ribonuclease 7 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 103302759 LOW QUALITY PROTEIN: ribonuclease 7-like K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 103303506 RNASE11; probable ribonuclease 11 K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 103294732 ZC3H12A; endoribonuclease ZC3H12A isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 103302456 ZC3H12B; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 103302372 ZC3H12D; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 103303064 ZC3H12C; probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 103305097 DROSHA; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 103293762 REXO2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 103295301 ENO1; alpha-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 103299861 ENO3; beta-enolase isoform X2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 103289033 ENO2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 103305388 PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 103285238 PFKM; ATP-dependent 6-phosphofructokinase, muscle type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 103289780 PFKL; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 103300829 PFKP; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 103286282 HSPA9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 103290563 HSPD1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 103296017 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 103288639 EXOSC1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 103302660 EXOSC4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 103297637 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024