+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Echinococcus granulosus (hydatid tapeworm)</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        EGR_02332 mRNA cap guanine-N7 methyltransferase	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        EGR_00095 Cell division protein kinase	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        EGR_03163 S-adenosyl-L-methionine-dependent methyltransferase ftsjd2	K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57] 
D      Cap binding complex
E        EGR_04403 Nuclear cap-binding protein subunit	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        EGR_07702 Nuclear cap-binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        EGR_06867 Cleavage and polyadenylation specificity factor subunit	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        EGR_01552 Cleavage and polyadenylation specificity factor subunit 6	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        EGR_04072 Polyribonucleotide 5'-hydroxyl-kinase Clp1	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        EGR_05073 Pre-mRNA cleavage complex 2 protein Pcf11	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        EGR_05005 Cleavage and polyadenylation specificity factor subunit	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        EGR_06977 putative cleavage and polyadenylation specificity factor subunit	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        EGR_00716 Cleavage and polyadenylation specificity factor subunit	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        EGR_00328 Pre-mRNA 3'-end-processing factor FIP1	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        EGR_01759 WD repeat-containing protein 33	K15542 PFS2; polyadenylation factor subunit 2 
E        EGR_07199 WD repeat-containing protein 82	K14962 WDR82; COMPASS component SWD2 
E        EGR_09295 Serine/threonine-protein phosphatase PP1-beta catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        EGR_03553 Serine/threonine-protein phosphatase PP1 isozyme	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        EGR_08621 Serine/threonine-protein phosphatase PP1-beta	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        EGR_00310 Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        EGR_02933 Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        EGR_05387 Cleavage stimulation factor subunit	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        EGR_06353 Cleavage stimulation factor subunit 2 tau variant	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        EGR_02408 Cleavage stimulation factor subunit 3	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        EGR_07431 Symplekin	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        EGR_09977 Small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        EGR_03805 putative small nuclear ribonucleoprotein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        EGR_01674 Small nuclear ribonucleoprotein G	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        EGR_06977 putative cleavage and polyadenylation specificity factor subunit	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        EGR_00716 Cleavage and polyadenylation specificity factor subunit	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        EGR_06353 Cleavage stimulation factor subunit 2 tau variant	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        EGR_07431 Symplekin	K06100 SYMPK; symplekin 
E        EGR_08140 Histone RNA hairpin-binding protein	K18710 SLBP; histone RNA hairpin-binding protein 
D      DRB sensitivity inducing factor (DSIF) complex
E        EGR_01848 Transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        EGR_00234 Transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        EGR_08908 N6-adenosine-methyltransferase subunit	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        EGR_08094 N6-adenosine-methyltransferase subunit	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        EGR_09506 Methyltransferase-like protein	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        EGR_05066 Putative methyltransferase	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        EGR_09372 Pre-mRNA-splicing regulator female-lethal(2)D	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        EGR_09379 Pre-mRNA-splicing regulator female-lethal(2)D	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        EGR_05579 Pre-mRNA-splicing regulator female-lethal(2)D	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        EGR_01247 hypothetical protein	K22910 VIRMA; protein virilizer 
E        EGR_03776 Putative RNA-binding protein 15B	K13190 RBM15; RNA-binding protein 15 
E        EGR_08703 Putative RNA-binding protein	K13190 RBM15; RNA-binding protein 15 
D      Poly(A) addition factors
E        EGR_07054 Poly(A) polymerase alpha	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        EGR_11136 Poly(A) RNA polymerase GLD2	K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] 
E        EGR_10020 Poly(A) RNA polymerase gld-2 A	K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] 
E        EGR_10023 Poly(A) RNA polymerase GLD2-A	K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] 
E        EGR_10025 Poly(A) RNA polymerase GLD2	K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        EGR_05978 BRCA1-associated RING domain protein	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        EGR_01051 TAR DNA-binding protein	K23600 TARDBP; TAR DNA-binding protein 43 
C    Other processing factors
D      EGR_08429 DNA/RNA-binding protein KIN17	K13102 KIN; DNA/RNA-binding protein KIN17 
D      EGR_00371 Zinc finger CCCH domain-containing protein	K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 
D      EGR_06848 Serrate RNA effector molecule	K27103 SRRT; serrate RNA effector molecule 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        EGR_04285 RNA-binding protein 8A	K12876 RBM8A; RNA-binding protein 8A 
E        EGR_01124 hypothetical protein	K12877 MAGOH; protein mago nashi 
E        EGR_06901 RNA and export factor-binding protein 2	K12881 THOC4; THO complex subunit 4 
E        EGR_06510 Spliceosome RNA helicase BAT1	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        EGR_07845 ATP-dependent RNA helicase FAL1	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        EGR_03121 Eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        EGR_09603 hypothetical protein	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        EGR_04356 Protein CASC3	K14323 CASC3; protein CASC3 
E        EGR_05179 Histone deacetylase complex subunit SAP18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        EGR_06416 putative kinase-interacting protein	K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus 
E        EGR_06277 hypothetical protein	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        EGR_02666 THO complex subunit	K12878 THOC1; THO complex subunit 1 
E        EGR_01578 THO complex subunit 2	K12879 THOC2; THO complex subunit 2 
E        EGR_03310 THO complex subunit 3	K12880 THOC3; THO complex subunit 3 
E        EGR_06901 RNA and export factor-binding protein 2	K12881 THOC4; THO complex subunit 4 
E        EGR_06657 THO complex subunit	K13174 THOC5; THO complex subunit 5 
E        EGR_05340 THO complex subunit	K13176 THOC7; THO complex subunit 7 
D      TREX-2 complex
E        EGR_01288 PCI domain-containing protein	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        EGR_03821 hypothetical protein	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        EGR_07193 Enhancer of yellow 2 transcription factor	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        EGR_06874 Enhancer of yellow 2 transcription factor	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        EGR_06570 Centrin-2	K10840 CETN2; centrin-2 
E        EGR_07150 Centrin-2	K10840 CETN2; centrin-2 
E        EGR_08823 Centrin-3	K16466 CETN3; centrin-3 
D      Nuclear pore complex
E        EGR_08158 Nucleoprotein TPR	K09291 TPR; nucleoprotein TPR 
E        EGR_00172 mRNA export factor	K14298 RAE1; mRNA export factor 
E        EGR_06985 hypothetical protein	K14004 SEC13; protein transport protein SEC13 
E        EGR_00573 Nuclear pore complex protein Nup54	K14308 NUP54; nuclear pore complex protein Nup54 
E        EGR_06142 Mitogen-activated protein kinase organizer	K14306 NUP62; nuclear pore complex protein Nup62 
E        EGR_08813 Nuclear pore complex protein Nup88	K14318 NUP88; nuclear pore complex protein Nup88 
E        EGR_02512 Nuclear pore complex protein Nup93	K14309 NUP93; nuclear pore complex protein Nup93 
E        EGR_10569 Nuclear pore complex protein Nup98	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        EGR_02137 Nuclear pore complex protein Nup107	K14301 NUP107; nuclear pore complex protein Nup107 
E        EGR_03913 hypothetical protein	K14300 NUP133; nuclear pore complex protein Nup133 
E        EGR_05842 hypothetical protein	K14311 NUP188; nuclear pore complex protein Nup188 
E        EGR_10112 Nuclear pore complex protein Nup155	K14312 NUP155; nuclear pore complex protein Nup155 
E        EGR_02897 Nuclear pore membrane glycoprotein	K14314 NUP210; nuclear pore complex protein Nup210 
E        EGR_07427 Methyltransferase-like protein 11A	K14317 NUP214; nuclear pore complex protein Nup214 
E        EGR_02414 Nucleoporin seh1	K14299 SEH1; nucleoporin SEH1 
E        EGR_00452 E3 SUMO-protein ligase RanBP2	K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-] 
E        EGR_08823 Centrin-3	K16466 CETN3; centrin-3 
E        EGR_05979 Nucleoporin GLE1	K18723 GLE1; nucleoporin GLE1 
E        EGR_04877 Nuclear RNA export factor	K14284 NXF; nuclear RNA export factor 
D      Ran-mediated transport factors
E        EGR_04178 GTP-binding nuclear protein Ran	K07936 RAN; GTP-binding nuclear protein Ran 
E        EGR_09665 hypothetical protein	K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D 
E        EGR_08430 ELAV-like protein	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        EGR_09928 ELAV-like protein	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        EGR_06740 ELAV-like protein 2	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        EGR_02907 FAS-associated factor 2	K18726 FAF2; FAS-associated factor 2 
E        EGR_01043 Transitional endoplasmic reticulum ATPase	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        EGR_02328 Transportin-1	K18727 TNPO2; transportin-2 
E        EGR_05229 Exportin-1	K14290 XPO1; exportin-1 
E        EGR_08810 Exportin-7	K18460 XPO7; exportin-7 
D      eIF4F and regulatory proteins
E        EGR_00049 Eukaryotic translation initiation factor 4E	K03259 EIF4E; translation initiation factor 4E 
E        EGR_06994 Eukaryotic initiation factor 4A	K03257 EIF4A; translation initiation factor 4A 
E        EGR_05394 Eukaryotic translation initiation factor 4 gamma 2	K03260 EIF4G; translation initiation factor 4G 
E        EGR_05503 Eukaryotic translation initiation factor 4H	K24086 EIF4H; translation initiation factor 4H 
E        EGR_08339 Eukaryotic translation initiation factor 4E-binding protein	K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1 
E        EGR_01565 Fragile X mental retardation syndrome-related protein 2	K15516 FMR; fragile X mental retardation protein 
E        EGR_03880 Fragile X mental retardation syndrome-related protein	K15516 FMR; fragile X mental retardation protein 
E        EGR_01350 Cytoplasmic FMR1-interacting protein	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        EGR_00789 Cytoplasmic polyadenylation element-binding protein	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        EGR_00812 Cytoplasmic polyadenylation element-binding protein	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        EGR_03492 ATP-dependent RNA helicase ded1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        EGR_08130 ATP-dependent RNA helicase DDX3Y	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        EGR_03108 PERQ amino acid-rich with GYF domain-containing protein 2	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        EGR_04704 Polyadenylate-binding protein	K13126 PABPC; polyadenylate-binding protein 
E        EGR_02540 Density-regulated protein	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
E        EGR_06352 APOBEC1 complementation factor	K24978 A1CF; APOBEC1 complementation factor 
D      Other transport factors
E        EGR_02128 Partner of Y14 and mago	K14294 WIBG; partner of Y14 and mago 
E        EGR_00075 Heterogeneous nuclear ribonucleoprotein A2	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        EGR_00074 Heterogeneous nuclear ribonucleoprotein 87F	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        EGR_01603 RNA-binding protein Musashi	K14411 MSI; RNA-binding protein Musashi 
E        EGR_04515 RNA-binding protein Musashi	K14411 MSI; RNA-binding protein Musashi 
E        EGR_05293 RNA-binding protein Musashi Rbp6	K14411 MSI; RNA-binding protein Musashi 
E        EGR_07574 DAZ-associated protein	K14411 MSI; RNA-binding protein Musashi 
E        EGR_03155 DAZ-associated protein	K14411 MSI; RNA-binding protein Musashi 
E        EGR_08982 DAZ-associated protein 1	K14411 MSI; RNA-binding protein Musashi 
E        EGR_08093 DAZ-associated protein	K14411 MSI; RNA-binding protein Musashi 
E        EGR_06266 DAZ-associated protein	K14411 MSI; RNA-binding protein Musashi 
E        EGR_01955 HBS1-like protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        EGR_06736 Protein pelota	K06965 PELO; protein pelota 
E        EGR_09203 Polyadenylate-binding protein 2	K14396 PABPN1; polyadenylate-binding protein 2 
E        EGR_00197 ATP-dependent RNA helicase DDX19A	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        EGR_01892 Pre-mRNA-splicing factor SYF1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        EGR_07987 SAP domain-containing ribonucleoprotein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        EGR_02528 Regulator of chromosome condensation	K11493 RCC1; regulator of chromosome condensation 
E        EGR_00304 Transcriptional activator protein Pur-alpha	K21772 PURA; transcriptional activator protein Pur-alpha 
E        EGR_08936 Polymerase delta-interacting protein 3	K22414 POLDIP3; polymerase delta-interacting protein 3 
E        EGR_02774 Leukocyte receptor cluster member protein	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        EGR_00128 Eukaryotic peptide chain release factor subunit	K03265 ETF1; peptide chain release factor subunit 1 
E        EGR_07384 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	K03267 ERF3; peptide chain release factor subunit 3 
E        EGR_00533 Regulator of nonsense transcripts	K14327 UPF2; regulator of nonsense transcripts 2 
E        EGR_02817 Regulator of nonsense transcripts 3A	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        EGR_09643 Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        EGR_03499 Serine/threonine-protein phosphatase 2A regulatory subunit A beta isoform	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        EGR_06234 Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        EGR_09663 Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        EGR_04315 Serine/threonine-protein phosphatase 2A regulatory subunit B alpha isoform	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        EGR_00903 Serine/threonine-protein phosphatase 2A regulatory subunit B alpha isoform	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        EGR_08075 Protein phosphatase PP2A regulatory subunit	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        EGR_03936 Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        EGR_06709 Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        EGR_05331 Serine/threonine-protein phosphatase 2A regulatory subunit alpha isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        EGR_05308 Serine/threonine-protein phosphatase 2A regulatory subunit delta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        EGR_09037 Serine/threonine-protein phosphatase 2A regulatory subunit delta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        EGR_02427 Serine/threonine-protein kinase SMG1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        EGR_07898 hypothetical protein	K11125 SMG5; protein SMG5 
E        EGR_01371 Telomerase-binding protein EST1A	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        EGR_03448 hypothetical protein	K18734 SMG8; protein SMG8 
E        EGR_01068 hypothetical protein	K18735 SMG9; protein SMG9 
E        EGR_03108 PERQ amino acid-rich with GYF domain-containing protein 2	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        EGR_00580 putative ATP-dependent RNA helicase DHX34	K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6] 
E        EGR_07547 GTP-binding protein	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        EGR_01946 Myosin-Va	K10357 MYO5; myosin V 
E        EGR_05901 Protein bicaudal D	K18739 BICD; protein bicaudal D 
E        EGR_00121 hypothetical protein	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
E        EGR_08301 Actin, cytoplasmic 2	K05692 ACTB_G1; actin beta/gamma 1 
E        EGR_09069 Actin-1	K05692 ACTB_G1; actin beta/gamma 1 
E        EGR_10647 T-box transcription factor TBX6	K10180 TBX6; T-box protein 6 
E        EGR_09779 Brachyury protein	K10180 TBX6; T-box protein 6 
E        EGR_01635 Nanos	K18741 NANOS1; protein nanos 1 
E        EGR_04615 hypothetical protein	K18741 NANOS1; protein nanos 1 
D      Trans-acting binding proteins
E        EGR_02828 Far upstream element-binding protein 2	K13210 FUBP; far upstream element-binding protein 
E        EGR_02642 Elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        EGR_04125 Elongation factor 1-gamma	K03233 EEF1G; elongation factor 1-gamma 
E        EGR_03357 Polypyrimidine tract-binding protein	K13218 PTBP1; polypyrimidine tract-binding protein 1 
E        EGR_08482 Regulator of differentiation	K13218 PTBP1; polypyrimidine tract-binding protein 1 
E        EGR_00789 Cytoplasmic polyadenylation element-binding protein	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        EGR_00812 Cytoplasmic polyadenylation element-binding protein	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
D      Other mRNA localization factors
E        EGR_01565 Fragile X mental retardation syndrome-related protein 2	K15516 FMR; fragile X mental retardation protein 
E        EGR_03880 Fragile X mental retardation syndrome-related protein	K15516 FMR; fragile X mental retardation protein 
E        EGR_01350 Cytoplasmic FMR1-interacting protein	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        EGR_00783 hypothetical protein	K18743 CAPRIN1; caprin-1 
E        EGR_01213 Nuclease-sensitive element-binding protein	K09276 YBX1; Y-box-binding protein 1 
E        EGR_03088 DIS3-like exonuclease 2	K18748 SSD1; protein SSD1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        EGR_06606 Protein argonaute-2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        EGR_10859 Protein argonaute-3	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        EGR_10858 Protein argonaute-2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        EGR_00049 Eukaryotic translation initiation factor 4E	K03259 EIF4E; translation initiation factor 4E 
E        EGR_03492 ATP-dependent RNA helicase ded1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        EGR_08130 ATP-dependent RNA helicase DDX3Y	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        EGR_03463 ATP-dependent RNA helicase cgh-1	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        EGR_04338 hypothetical protein	K18749 LSM14; protein LSM14 
E        EGR_09010 hypothetical protein	K18749 LSM14; protein LSM14 
E        EGR_01213 Nuclease-sensitive element-binding protein	K09276 YBX1; Y-box-binding protein 1 
E        EGR_08308 Wilms tumor protein 1-interacting protein	K16682 AJUBA; LIM domain-containing protein 
E        EGR_02427 Serine/threonine-protein kinase SMG1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        EGR_07898 hypothetical protein	K11125 SMG5; protein SMG5 
E        EGR_01371 Telomerase-binding protein EST1A	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        EGR_08974 Zinc finger protein zfs1	K18753 ZFP36L; butyrate response factor 
E        EGR_00075 Heterogeneous nuclear ribonucleoprotein A2	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        EGR_00074 Heterogeneous nuclear ribonucleoprotein 87F	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        EGR_04421 cAMP-dependent protein kinase catalytic subunit alpha	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        EGR_06877 cAMP-dependent protein kinase catalytic subunit alpha	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        EGR_06851 cAMP-dependent protein kinase catalytic subunit alpha	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        EGR_01419 La-related protein	K18757 LARP1; la-related protein 1 
E        EGR_08859 La-related protein	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        EGR_07349 mRNA-decapping enzyme 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        EGR_05944 mRNA-decapping enzyme 1A	K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] 
E        EGR_02428 U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        EGR_01836 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        EGR_02158 U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        EGR_04393 U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        EGR_01131 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        EGR_00711 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        EGR_05266 U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        EGR_06441 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        EGR_03069 Kinesin light chain	K10407 KLC; kinesin light chain 
E        EGR_01946 Myosin-Va	K10357 MYO5; myosin V 
E        EGR_05177 Tubulin alpha-3 chain	K07374 TUBA; tubulin alpha 
E        EGR_00635 Tubulin alpha-1C chain	K07374 TUBA; tubulin alpha 
E        EGR_00665 Tubulin alpha-2/alpha-4 chain	K07374 TUBA; tubulin alpha 
E        EGR_00667 Tubulin alpha-1C chain	K07374 TUBA; tubulin alpha 
E        EGR_00677 Tubulin alpha-1C chain	K07374 TUBA; tubulin alpha 
E        EGR_05087 Tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        EGR_05342 Tubulin alpha-3 chain	K07374 TUBA; tubulin alpha 
E        EGR_08682 Tubulin alpha-1A chain	K07374 TUBA; tubulin alpha 
E        EGR_06356 Tubulin alpha-1C chain	K07374 TUBA; tubulin alpha 
E        EGR_08207 Tubulin alpha-8 chain	K07374 TUBA; tubulin alpha 
E        EGR_08168 Tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        EGR_08167 Tubulin alpha-1 chain	K07374 TUBA; tubulin alpha 
E        EGR_09705 Tubulin alpha-1C chain	K07374 TUBA; tubulin alpha 
E        EGR_00789 Cytoplasmic polyadenylation element-binding protein	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        EGR_00812 Cytoplasmic polyadenylation element-binding protein	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        EGR_03502 CCR4-NOT transcription complex subunit	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        EGR_09124 CCR4-NOT transcription complex subunit 2	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        EGR_05714 Regulator of gene activity	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        EGR_01622 CCR4-NOT transcription complex subunit 3	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        EGR_02957 CCR4-NOT transcription complex subunit 4	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        EGR_03377 CCR4-NOT transcription complex subunit 6-like protein	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        EGR_03383 Elongator complex protein 4	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        EGR_05874 PAB-dependent poly(A)-specific ribonuclease subunit	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        EGR_06576 Protein Tob1	K14443 TOB; protein Tob/BTG 
E        EGR_07367 Enhancer of mRNA-decapping protein	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        EGR_00533 Regulator of nonsense transcripts	K14327 UPF2; regulator of nonsense transcripts 2 
E        EGR_02817 Regulator of nonsense transcripts 3A	K14328 UPF3; regulator of nonsense transcripts 3 
E        EGR_01581 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        EGR_06439 YTH domain family protein	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        EGR_04704 Polyadenylate-binding protein	K13126 PABPC; polyadenylate-binding protein 
E        EGR_01565 Fragile X mental retardation syndrome-related protein 2	K15516 FMR; fragile X mental retardation protein 
E        EGR_03880 Fragile X mental retardation syndrome-related protein	K15516 FMR; fragile X mental retardation protein 
E        EGR_10118 Ras GTPase-activating protein-binding protein	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        EGR_03890 Eukaryotic translation initiation factor 2A	K15026 EIF2A; translation initiation factor 2A 
E        EGR_06994 Eukaryotic initiation factor 4A	K03257 EIF4A; translation initiation factor 4A 
E        EGR_07845 ATP-dependent RNA helicase FAL1	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        EGR_03121 Eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        EGR_05394 Eukaryotic translation initiation factor 4 gamma 2	K03260 EIF4G; translation initiation factor 4G 
E        EGR_01966 Ribosomal protein S6 kinase alpha-3	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        EGR_07740 Guanine nucleotide-binding protein subunit beta-2-like protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        EGR_04877 Nuclear RNA export factor	K14284 NXF; nuclear RNA export factor 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        EGR_05944 mRNA-decapping enzyme 1A	K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] 
E        EGR_07349 mRNA-decapping enzyme 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        EGR_03463 ATP-dependent RNA helicase cgh-1	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        EGR_07367 Enhancer of mRNA-decapping protein	K12616 EDC4; enhancer of mRNA-decapping protein 4 
D      Lsm complex
E        EGR_02428 U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        EGR_01836 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        EGR_02158 U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        EGR_04393 U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        EGR_01131 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        EGR_00711 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        EGR_05266 U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        EGR_06441 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
D      Other 5'-3' decay factors
E        EGR_00336 Scavenger mRNA-decapping enzyme DcpS	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
C    3'-5' decay
D      Core exosome factors
E        EGR_09355 3'-5' exoribonuclease CSL4	K07573 CSL4; exosome complex component CSL4 
E        EGR_07245 Exosome complex exonuclease RRP4	K03679 RRP4; exosome complex component RRP4 
E        EGR_02545 Exosome complex exonuclease RRP40	K03681 RRP40; exosome complex component RRP40 
E        EGR_04796 Exosome complex exonuclease RRP41	K11600 RRP41; exosome complex component RRP41 
E        EGR_09011 Exosome complex exonuclease RRP46	K12590 RRP46; exosome complex component RRP46 
E        EGR_00344 Exosome complex exonuclease RRP42	K12589 RRP42; exosome complex component RRP42 
E        EGR_04397 Exosome complex exonuclease RRP45	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        EGR_07292 DIS3-like exonuclease	K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-] 
E        EGR_01358 Nuclear nucleic acid-binding protein C1D	K12592 C1D; exosome complex protein LRP1 
D      TRAMP complex
E        EGR_02753 DNA polymerase sigma	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        EGR_01262 Zinc finger CCHC domain-containing protein	K12597 AIR1_2; protein AIR1/2 
E        EGR_08693 Zinc finger CCHC domain-containing protein 7	K12597 AIR1_2; protein AIR1/2 
E        EGR_02546 Superkiller viralicidic activity 2-like 2	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
E        EGR_08106 Superkiller viralicidic activity 2-like 2	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        EGR_04101 WD repeat-containing protein SL1-17	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        EGR_03377 CCR4-NOT transcription complex subunit 6-like protein	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        EGR_03502 CCR4-NOT transcription complex subunit	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        EGR_09124 CCR4-NOT transcription complex subunit 2	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        EGR_05714 Regulator of gene activity	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        EGR_01622 CCR4-NOT transcription complex subunit 3	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        EGR_02957 CCR4-NOT transcription complex subunit 4	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        EGR_02174 Cell differentiation protein RCD1	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        EGR_07883 CCR4-NOT transcription complex subunit	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
D      Pan complex
E        EGR_03383 Elongator complex protein 4	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        EGR_05874 PAB-dependent poly(A)-specific ribonuclease subunit	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        EGR_01811 putative ATP-dependent RNA helicase DHX36	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        EGR_06576 Protein Tob1	K14443 TOB; protein Tob/BTG 
E        EGR_06482 ERI1 exoribonuclease	K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] 
E        EGR_00336 Scavenger mRNA-decapping enzyme DcpS	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        EGR_02242 hypothetical protein	K26109 NRDE2; nuclear exosome regulator NRDE2 
C    Other degradation factors
D      RNases
E        EGR_09192 putative ribonuclease ZC3H12C	K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] 
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        EGR_03488 Ribonuclease 3	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
D      Helicases
D      Other RNA degradosome components
E        EGR_07232 Beta-enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        EGR_09630 Enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        EGR_09632 Enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        EGR_07554 6-phosphofructokinase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        EGR_00425 Stress-70 protein	K04043 dnaK; molecular chaperone DnaK 
E        EGR_05042 Stress-70 protein	K04043 dnaK; molecular chaperone DnaK 
E        EGR_03136 heat shock protein	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        EGR_07245 Exosome complex exonuclease RRP4	K03679 RRP4; exosome complex component RRP4 
E        EGR_09355 3'-5' exoribonuclease CSL4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        EGR_04796 Exosome complex exonuclease RRP41	K11600 RRP41; exosome complex component RRP41 
E        EGR_00344 Exosome complex exonuclease RRP42	K12589 RRP42; exosome complex component RRP42 
D      Others
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#Last updated: April 25, 2024