+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Eucalyptus grandis (rose gum)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 104450185 mRNA cap guanine-N7 methyltransferase 1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 104454121 mRNA cap guanine-N7 methyltransferase 2 isoform X1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 104426395 mRNA-capping enzyme-like K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 120285921 LOW QUALITY PROTEIN: mRNA-capping enzyme-like K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 104425813 cyclin-dependent kinase D-3 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
D Cap binding complex
E 104433862 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 104424939 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 104448901 pre-mRNA cleavage factor Im 25 kDa subunit 2 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 104438066 pre-mRNA cleavage factor Im 25 kDa subunit 1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 104443464 pre-mRNA cleavage factor Im 25 kDa subunit 2 isoform X1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 104450422 LOW QUALITY PROTEIN: uncharacterized PE-PGRS family protein PE_PGRS54 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 104419345 protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 104438418 polyadenylation and cleavage factor homolog 4 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 104441387 polyadenylation and cleavage factor homolog 4 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 104424329 LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 104424427 cleavage and polyadenylation specificity factor subunit 2 isoform X1 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 104452616 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 104452614 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 104452615 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 104421172 uncharacterized protein LOC104421172 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 104444897 LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 104454545 LOW QUALITY PROTEIN: flowering time control protein FY K15542 PFS2; polyadenylation factor subunit 2
E 104420791 protein ANTHESIS POMOTING FACTOR 1 K14962 WDR82; COMPASS component SWD2
E 104422631 protein ANTHESIS POMOTING FACTOR 1 K14962 WDR82; COMPASS component SWD2
E 104433366 serine/threonine-protein phosphatase PP1 isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104432280 serine/threonine-protein phosphatase PP1 isozyme 9 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104432529 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104432687 serine/threonine-protein phosphatase PP1 isozyme 2 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104414514 serine/threonine-protein phosphatase PP1 isozyme 3 isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104422547 serine/threonine-protein phosphatase PP1 isozyme 3 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104416909 serine/threonine-protein phosphatase PP1 isozyme 3 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104415613 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 120290871 serine/threonine-protein phosphatase PP1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104421960 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X2 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 120286630 LOW QUALITY PROTEIN: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 104426027 cleavage stimulation factor subunit 50 isoform X1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 104451957 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 104426832 cleavage stimulation factor subunit 77 K14408 CSTF3; cleavage stimulation factor subunit 3
E 104433139 symplekin K06100 SYMPK; symplekin
E 104449207 uncharacterized protein LOC104449207 isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 104428006 LOW QUALITY PROTEIN: small nuclear ribonucleoprotein-associated protein B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 104438434 small nuclear ribonucleoprotein SmD3b K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 104431046 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 104435957 probable small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 104432953 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 104424427 cleavage and polyadenylation specificity factor subunit 2 isoform X1 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 104452616 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 104452614 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 104452615 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 104451957 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 104433139 symplekin K06100 SYMPK; symplekin
E 104449207 uncharacterized protein LOC104449207 isoform X1 K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E 104454038 transcription elongation factor SPT4 homolog 2 K15171 SUPT4H1; transcription elongation factor SPT4
E 104449636 LOW QUALITY PROTEIN: putative transcription elongation factor SPT5 homolog 1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 104441622 N6-adenosine-methyltransferase MT-A70-like K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 104438078 N6-adenosine-methyltransferase non-catalytic subunit MTB isoform X1 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 104453416 U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase isoform X1 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 104434002 FKBP12-interacting protein of 37 kDa K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 104417817 FKBP12-interacting protein of 37 kDa K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 104437801 uncharacterized protein LOC104437801 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 104435456 E3 ubiquitin-protein ligase HAKAI homolog K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 104423071 nuclear poly(A) polymerase 4 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 104425805 nuclear poly(A) polymerase 1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E 104440745 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 104419231 zinc finger CCCH domain-containing protein 41 K13192 RBM26; RNA-binding protein 26
E 104457030 RNA demethylase ALKBH10B K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 104422754 RNA demethylase ALKBH9B K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 104426697 RNA demethylase ALKBH10B K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
C Other processing factors
D 104438609 KIN17-like protein K13102 KIN; DNA/RNA-binding protein KIN17
D 104423114 methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 104423459 LOW QUALITY PROTEIN: serrate RNA effector molecule K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 104421496 RNA-binding protein Y14 K12876 RBM8A; RNA-binding protein 8A
E 104441364 protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 104432755 THO complex subunit 4A K12881 THOC4; THO complex subunit 4
E 104455868 THO complex subunit 4B K12881 THOC4; THO complex subunit 4
E 104422162 THO complex subunit 4D isoform X1 K12881 THOC4; THO complex subunit 4
E 104437679 DEAD-box ATP-dependent RNA helicase 15 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 104437040 DEAD-box ATP-dependent RNA helicase 15 isoform X1 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 104421593 eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 104444203 LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 104444206 LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III homolog B K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 108954036 eukaryotic initiation factor 4A-3-like K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 120293422 eukaryotic initiation factor 4A-3-like isoform X1 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 104444296 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 104452737 pinin K13114 PNN; pinin
E 104418232 apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 104450015 serine/arginine-rich splicing factor SR45 isoform X2 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 104432692 serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 104445651 THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 104433054 LOW QUALITY PROTEIN: THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 104449080 THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 104432755 THO complex subunit 4A K12881 THOC4; THO complex subunit 4
E 104455868 THO complex subunit 4B K12881 THOC4; THO complex subunit 4
E 104422162 THO complex subunit 4D isoform X1 K12881 THOC4; THO complex subunit 4
E 104449322 THO complex subunit 5B K13174 THOC5; THO complex subunit 5
E 104442299 THO complex subunit 7A K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 104436490 enhanced ethylene response protein 5 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 104418528 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 104426275 protein DELETION OF SUV3 SUPPRESSOR 1(I) K10881 SHFM1; 26 proteasome complex subunit DSS1
E 104419141 transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 104414935 SAC3 family protein B K23719 SAC3; nuclear mRNA export protein SAC3
E 104454500 SAC3 family protein C K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E 104451048 nuclear-pore anchor K09291 TPR; nucleoprotein TPR
E 104419926 protein RAE1 K14298 RAE1; mRNA export factor
E 104423208 protein RAE1 K14298 RAE1; mRNA export factor
E 104424193 protein RAE1 K14298 RAE1; mRNA export factor
E 104424675 protein transport protein SEC13 homolog B K14004 SEC13; protein transport protein SEC13
E 104422580 protein transport protein SEC13 homolog B K14004 SEC13; protein transport protein SEC13
E 104436251 LOW QUALITY PROTEIN: nuclear pore complex protein NUP85 K14304 NUP85; nuclear pore complex protein Nup85
E 104426516 nuclear pore complex protein NUP43 K14305 NUP43; nuclear pore complex protein Nup43
E 104441803 uncharacterized protein LOC104441803 K14295 NUP50; nuclear pore complex protein Nup50
E 104433659 LOW QUALITY PROTEIN: nuclear pore complex protein NUP54 K14308 NUP54; nuclear pore complex protein Nup54
E 104442288 nuclear pore complex protein NUP62 K14306 NUP62; nuclear pore complex protein Nup62
E 104443275 uncharacterized serine-rich protein C215.13 K14306 NUP62; nuclear pore complex protein Nup62
E 104442297 nuclear pore complex protein NUP62-like K14306 NUP62; nuclear pore complex protein Nup62
E 104421086 LOW QUALITY PROTEIN: nuclear pore complex protein NUP88 K14318 NUP88; nuclear pore complex protein Nup88
E 120289051 LOW QUALITY PROTEIN: nuclear pore complex protein NUP88-like K14318 NUP88; nuclear pore complex protein Nup88
E 104427474 LOW QUALITY PROTEIN: nuclear pore complex protein NUP93A K14309 NUP93; nuclear pore complex protein Nup93
E 108955995 LOW QUALITY PROTEIN: nuclear pore complex protein NUP93A-like K14309 NUP93; nuclear pore complex protein Nup93
E 104444151 nuclear pore complex protein NUP98A-like K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 104450616 nuclear pore complex protein NUP96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 104428341 nuclear pore complex protein NUP98A isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 104425641 nuclear pore complex protein NUP107 K14301 NUP107; nuclear pore complex protein Nup107
E 104434701 nuclear pore complex protein NUP133 isoform X1 K14300 NUP133; nuclear pore complex protein Nup133
E 104418917 uncharacterized protein LOC104418917 isoform X1 K14311 NUP188; nuclear pore complex protein Nup188
E 104453659 LOW QUALITY PROTEIN: nuclear pore complex protein NUP155 K14312 NUP155; nuclear pore complex protein Nup155
E 104452429 nuclear pore complex protein NUP160 K14303 NUP160; nuclear pore complex protein Nup160
E 104423085 nuclear pore complex protein NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 104438536 nuclear pore complex protein NUP205 isoform X1 K14310 NUP205; nuclear pore complex protein Nup205
E 104422642 nuclear pore complex protein GP210 K14314 NUP210; nuclear pore complex protein Nup210
E 104423777 nuclear pore complex protein NUP214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 104457250 nuclear pore complex protein NUP58 K14307 NUPL1; nucleoporin p58/p45
E 104435877 zinc finger CCCH domain-containing protein 46 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 104425867 uncharacterized protein LOC104425867 K14315 NDC1; nucleoporin NDC1
E 104441642 protein SEH1 K14299 SEH1; nucleoporin SEH1
E 104425409 aladin K14320 AAAS; aladin
E 104433474 protein GLE1 K18723 GLE1; nucleoporin GLE1
D Ran-mediated transport factors
E 104438497 GTP-binding nuclear protein Ran1A isoform X1 K07936 RAN; GTP-binding nuclear protein Ran
E 104436643 LOW QUALITY PROTEIN: GTP-binding nuclear protein Ran-3 K07936 RAN; GTP-binding nuclear protein Ran
E 104444262 GTP-binding nuclear protein Ran1A-like K07936 RAN; GTP-binding nuclear protein Ran
E 104431007 GTP-binding nuclear protein Ran-3-like K07936 RAN; GTP-binding nuclear protein Ran
E 120291236 GTP-binding nuclear protein Ran1A-like K07936 RAN; GTP-binding nuclear protein Ran
E 104439167 GTP-binding nuclear protein Ran1A K07936 RAN; GTP-binding nuclear protein Ran
E 104426244 plant UBX domain-containing protein 10 K18726 FAF2; FAS-associated factor 2
E 104441625 LOW QUALITY PROTEIN: plant UBX domain-containing protein 10 K18726 FAF2; FAS-associated factor 2
E 104425081 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 104425078 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 104417839 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 104441001 protein N-lysine methyltransferase METTL21A isoform X2 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 104434063 protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 104450369 protein EXPORTIN 1A K14290 XPO1; exportin-1
E 104454494 exportin-7 isoform X1 K18460 XPO7; exportin-7
E 104414869 RAN GTPase-activating protein 2 K14319 RANGAP1; Ran GTPase-activating protein 1
E 104456999 RAN GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 104442972 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 104442557 eukaryotic translation initiation factor 4E-1 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 104445079 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E 104414438 LOW QUALITY PROTEIN: eukaryotic translation initiation factor K03259 EIF4E; translation initiation factor 4E
E 120286579 eukaryotic translation initiation factor-like K03259 EIF4E; translation initiation factor 4E
E 104438075 uncharacterized protein LOC104438075 K03257 EIF4A; translation initiation factor 4A
E 104423007 eukaryotic initiation factor 4A-2 K03257 EIF4A; translation initiation factor 4A
E 104449995 eukaryotic initiation factor 4A-14 K03257 EIF4A; translation initiation factor 4A
E 104436025 LOW QUALITY PROTEIN: eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 104436026 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 104446386 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 120288238 eukaryotic translation initiation factor-like K03260 EIF4G; translation initiation factor 4G
E 120293719 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like K03260 EIF4G; translation initiation factor 4G
E 104432559 LOW QUALITY PROTEIN: protein PIR K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 104439114 DEAD-box ATP-dependent RNA helicase 52B K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 104433789 DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 104425517 LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 104433705 protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 104423590 30S ribosomal protein 2, chloroplastic K13126 PABPC; polyadenylate-binding protein
E 104418709 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 104447874 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 104438776 polyadenylate-binding protein 7 K13126 PABPC; polyadenylate-binding protein
E 104449933 polyadenylate-binding protein 6 K13126 PABPC; polyadenylate-binding protein
E 104432671 LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH11 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 104431261 malignant T-cell-amplified sequence 1 homolog K07575 MCTS; malignant T-cell-amplified sequence
E 104436308 translation machinery-associated protein 22 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E 104419949 partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 104433917 UBP1-associated protein 2B K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104450080 LOW QUALITY PROTEIN: UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104423013 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104449107 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104448673 UBP1-associated protein 2B K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104454343 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104448524 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104419421 glycine-rich RNA-binding protein 4, mitochondrial K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104418214 UBP1-associated proteins 1A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 120289019 UBP1-associated protein 2B-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104427519 uncharacterized protein LOC104427519 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104445614 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 104457106 heterogeneous nuclear ribonucleoprotein A1-like 2 K14411 MSI; RNA-binding protein Musashi
E 104424662 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 104449238 RNA-binding protein 1 K14411 MSI; RNA-binding protein Musashi
E 104448159 heterogeneous nuclear ribonucleoprotein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 104420429 LOW QUALITY PROTEIN: RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 104438375 LOW QUALITY PROTEIN: HBS1-like protein K14416 HBS1; elongation factor 1 alpha-like protein
E 120286344 LOW QUALITY PROTEIN: HBS1-like protein K14416 HBS1; elongation factor 1 alpha-like protein
E 104426679 protein PELOTA 1 isoform X1 K06965 PELO; protein pelota
E 104450087 polyadenylate-binding protein 1 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 104419895 polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 104418311 polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 104425932 DEAD-box ATP-dependent RNA helicase 38 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 104445353 LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 120293536 pre-mRNA-splicing factor SYF1-like K12867 SYF1; pre-mRNA-splicing factor SYF1
E 104436040 protein MODIFIER OF SNC1 11 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 104426518 protein MODIFIER OF SNC1 11 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 104422252 LOW QUALITY PROTEIN: transcription factor Pur-alpha 1 K21772 PURA; transcriptional activator protein Pur-alpha
E 104454163 SAC3 family protein A K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E 104422231 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 104419069 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 104422000 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 104425818 LOW QUALITY PROTEIN: eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 104443591 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 104454177 regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 104420011 regulator of nonsense transcripts UPF3 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 104432941 serine/threonine-protein phosphatase PP2A catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 104433580 serine/threonine-protein phosphatase PP2A catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 104433787 serine/threonine-protein phosphatase PP2A-2 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 104422309 serine/threonine-protein phosphatase PP2A-2 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 104425519 serine/threonine-protein phosphatase PP2A-4 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 104433288 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 104425779 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 104417952 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 104436290 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 104449952 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 104432544 serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 104415362 serine/threonine protein phosphatase 2A regulatory subunit B''beta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 104415099 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 104437079 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 104438475 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 104433636 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 104453442 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 104415719 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 104419175 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 104425950 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 104420534 uncharacterized protein LOC104420534 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 104438482 protein SMG7-like K14409 SMG7; protein SMG7
E 104438483 protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 104424279 protein SMG9 K18735 SMG9; protein SMG9
E 104433705 protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
C Factors involved in mRNA localization
D Cargo complex
E 104444150 pumilio homolog 24 K14844 PUF6; pumilio homology domain family member 6
E 104414393 myosin-6 K10357 MYO5; myosin V
E 104437936 LOW QUALITY PROTEIN: myosin-15 K10357 MYO5; myosin V
E 104434828 myosin-11 K10357 MYO5; myosin V
E 104438064 LOW QUALITY PROTEIN: myosin-17 K10357 MYO5; myosin V
E 104415385 myosin-9 K10357 MYO5; myosin V
E 104456572 myosin-6 K10357 MYO5; myosin V
E 104423003 myosin-17 isoform X1 K10357 MYO5; myosin V
E 104450162 myosin-2 K10357 MYO5; myosin V
E 104438956 piRNA biogenesis protein EXD1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E 104437826 LOW QUALITY PROTEIN: far upstream element-binding protein 1 K13210 FUBP; far upstream element-binding protein
E 104418019 far upstream element-binding protein 1 K13210 FUBP; far upstream element-binding protein
E 104432850 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 104454193 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 104421815 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 104421810 elongation factor 1-alpha isoform X1 K03231 EEF1A; elongation factor 1-alpha
E 104421812 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 104420014 elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 104425315 LOW QUALITY PROTEIN: probable ADP-ribosylation factor GTPase-activating protein AGD14 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
D Other mRNA localization factors
E 104432559 LOW QUALITY PROTEIN: protein PIR K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 104452934 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104424522 RNA-binding KH domain-containing protein RCF3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104422005 KH domain-containing protein At4g18375 isoform X2 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104450687 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104415417 flowering locus K homology domain K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104444474 KH domain-containing protein HEN4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104444436 poly(rC)-binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104444847 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104449426 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104437325 RNA-binding KH domain-containing protein PEPPER K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 120295407 LOW QUALITY PROTEIN: KH domain-containing protein HEN4-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 104421414 LOW QUALITY PROTEIN: protein argonaute 4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104433919 protein argonaute 4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104434026 protein argonaute 5 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104434029 protein argonaute 5 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104453923 protein argonaute 7 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104456350 protein argonaute 10 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104440664 LOW QUALITY PROTEIN: protein argonaute 2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104442832 LOW QUALITY PROTEIN: protein argonaute 2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104456414 protein argonaute 1 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104442472 LOW QUALITY PROTEIN: protein argonaute 2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104424710 protein argonaute 16 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104424711 protein argonaute 16 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104425865 protein argonaute 1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104442972 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 104442557 eukaryotic translation initiation factor 4E-1 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 104445079 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E 104414438 LOW QUALITY PROTEIN: eukaryotic translation initiation factor K03259 EIF4E; translation initiation factor 4E
E 120286579 eukaryotic translation initiation factor-like K03259 EIF4E; translation initiation factor 4E
E 104443591 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 104439114 DEAD-box ATP-dependent RNA helicase 52B K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 104433789 DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 104425517 LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 104442084 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 104453829 LOW QUALITY PROTEIN: protein decapping 5 K18749 LSM14; protein LSM14
E 120296312 LOW QUALITY PROTEIN: protein decapping 5-like K18749 LSM14; protein LSM14
E 104414776 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 104421620 uncharacterized protein LOC104421620 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 104421625 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 104423504 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 104428812 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 104415478 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 104450439 transportin-1 K18752 TNPO1; transportin-1
E 104420534 uncharacterized protein LOC104420534 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 104438482 protein SMG7-like K14409 SMG7; protein SMG7
E 104438483 protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 104449675 zinc finger CCCH domain-containing protein 14 K18753 ZFP36L; butyrate response factor
E 104428846 cold shock protein 1-like K18754 LIN28; protein lin-28
E 104428848 cold shock protein 1 K18754 LIN28; protein lin-28
E 104433917 UBP1-associated protein 2B K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104450080 LOW QUALITY PROTEIN: UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104423013 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104449107 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104448673 UBP1-associated protein 2B K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104454343 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104448524 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104419421 glycine-rich RNA-binding protein 4, mitochondrial K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104418214 UBP1-associated proteins 1A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 120289019 UBP1-associated protein 2B-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104427519 uncharacterized protein LOC104427519 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104433918 la-related protein 1A K18757 LARP1; la-related protein 1
E 104448859 la-related protein 1B K18757 LARP1; la-related protein 1
E 104422799 la-related protein 1B K18757 LARP1; la-related protein 1
E 104419627 la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
D P-body specific factors
E 104421790 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 104433958 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 104447428 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 104449390 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 104422972 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 104426693 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 104449601 sm-like protein LSM3B K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 104426751 probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 104414977 sm-like protein LSM5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 104453287 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 104453285 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 104453291 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 104440627 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 104425185 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 104432840 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 104448228 sm-like protein LSM8 isoform X2 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 104414393 myosin-6 K10357 MYO5; myosin V
E 104437936 LOW QUALITY PROTEIN: myosin-15 K10357 MYO5; myosin V
E 104434828 myosin-11 K10357 MYO5; myosin V
E 104438064 LOW QUALITY PROTEIN: myosin-17 K10357 MYO5; myosin V
E 104415385 myosin-9 K10357 MYO5; myosin V
E 104456572 myosin-6 K10357 MYO5; myosin V
E 104423003 myosin-17 isoform X1 K10357 MYO5; myosin V
E 104450162 myosin-2 K10357 MYO5; myosin V
E 104449214 TUA1; tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 104453055 tubulin alpha chain K07374 TUBA; tubulin alpha
E 104448060 tubulin alpha chain K07374 TUBA; tubulin alpha
E 104433772 tubulin alpha-5 chain K07374 TUBA; tubulin alpha
E 104442991 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 104444451 CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 104422534 LOW QUALITY PROTEIN: probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 104442756 general negative regulator of transcription subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 104425248 CCR4-NOT transcription complex subunit 3-like K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 104432833 uncharacterized protein LOC104432833 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 104422543 uncharacterized protein LOC104422543 isoform X2 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 104446230 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104442335 carbon catabolite repressor protein 4 homolog 4 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104425511 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104447225 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104437559 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104436979 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104436985 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104433950 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104437158 LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104450622 probable CCR4-associated factor 1 homolog 6 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104421334 LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104450485 DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 104425160 protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 104450018 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 104449088 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 104454177 regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 104420011 regulator of nonsense transcripts UPF3 K14328 UPF3; regulator of nonsense transcripts 3
E 104423845 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 104415277 YTH domain-containing protein ECT4 K20102 YTHDF; YTH domain-containing family protein
E 104423285 YTH domain-containing protein ECT1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 104436394 oligouridylate-binding protein 1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 104438013 oligouridylate-binding protein 1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 104422971 oligouridylate-binding protein 1B K13201 TIA1; nucleolysin TIA-1/TIAR
E 104424089 oligouridylate-binding protein 1B-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 104423590 30S ribosomal protein 2, chloroplastic K13126 PABPC; polyadenylate-binding protein
E 104418709 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 104447874 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 104438776 polyadenylate-binding protein 7 K13126 PABPC; polyadenylate-binding protein
E 104449933 polyadenylate-binding protein 6 K13126 PABPC; polyadenylate-binding protein
E 104420656 nuclear transport factor 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 104425708 nuclear transport factor 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 104456208 eukaryotic translation initiation factor 2A isoform X1 K15026 EIF2A; translation initiation factor 2A
E 104429888 eukaryotic translation initiation factor 2A isoform X1 K15026 EIF2A; translation initiation factor 2A
E 120287553 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 2A-like K15026 EIF2A; translation initiation factor 2A
E 120287555 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 2A-like K15026 EIF2A; translation initiation factor 2A
E 104422645 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 104438075 uncharacterized protein LOC104438075 K03257 EIF4A; translation initiation factor 4A
E 104423007 eukaryotic initiation factor 4A-2 K03257 EIF4A; translation initiation factor 4A
E 104449995 eukaryotic initiation factor 4A-14 K03257 EIF4A; translation initiation factor 4A
E 104421593 eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 104444203 LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 104444206 LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III homolog B K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 108954036 eukaryotic initiation factor 4A-3-like K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 120293422 eukaryotic initiation factor 4A-3-like isoform X1 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 104436025 LOW QUALITY PROTEIN: eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 104436026 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 104446386 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 120288238 eukaryotic translation initiation factor-like K03260 EIF4G; translation initiation factor 4G
E 120293719 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like K03260 EIF4G; translation initiation factor 4G
E 104422039 guanine nucleotide-binding protein subunit beta-like protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 104425826 guanine nucleotide-binding protein subunit beta-like protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 104436631 tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 104433958 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 104447428 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 104421790 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 104442084 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 104449088 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 104425160 protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 104450018 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 104449390 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 104422972 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 104426693 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 104449601 sm-like protein LSM3B K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 104426751 probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 104414977 sm-like protein LSM5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 104453287 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 104453285 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 104453291 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 104440627 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 104425185 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 104432840 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 104448228 sm-like protein LSM8 isoform X2 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 104448827 5'-3' exoribonuclease 3 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 104415467 LOW QUALITY PROTEIN: 5'-3' exoribonuclease 4 K20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E 104432552 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 104457036 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 104418660 putative exosome complex component rrp40 K03681 RRP40; exosome complex component RRP40
E 104450961 exosome complex component RRP41 homolog isoform X1 K11600 RRP41; exosome complex component RRP41
E 104437777 exosome complex exonuclease RRP46 homolog K12590 RRP46; exosome complex component RRP46
E 104421643 exosome complex component RRP41-like K12587 MTR3; exosome complex component MTR3
E 104454005 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 104432537 exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 104432145 LOW QUALITY PROTEIN: exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 120292641 LOW QUALITY PROTEIN: exosome complex component RRP43-like K12586 RRP43; exosome complex component RRP43
E 104414033 LOW QUALITY PROTEIN: exosome complex component RRP45A K03678 RRP45; exosome complex component RRP45
E 120287570 exosome complex component RRP45A-like isoform X1 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 104421073 exosome complex exonuclease RRP44 homolog A K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 104443185 protein RRP6-like 2 isoform X1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 104437564 nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 104432711 uncharacterized protein LOC104432711 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 104448435 terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 104435888 DExH-box ATP-dependent RNA helicase DExH10 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E 104452464 LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH9 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 104432671 LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH11 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 104450366 LOW QUALITY PROTEIN: tetratricopeptide repeat protein SKI3 K12600 SKI3; superkiller protein 3
E 104438065 WD repeat-containing protein VIP3 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 104446230 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104442335 carbon catabolite repressor protein 4 homolog 4 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104425511 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104444451 CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 104422534 LOW QUALITY PROTEIN: probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 104442756 general negative regulator of transcription subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 104425248 CCR4-NOT transcription complex subunit 3-like K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 104432833 uncharacterized protein LOC104432833 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 104422543 uncharacterized protein LOC104422543 isoform X2 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 104447225 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104437559 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104436979 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104436985 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104433950 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104437158 LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104450622 probable CCR4-associated factor 1 homolog 6 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104421334 LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104436006 uncharacterized protein LOC104436006 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 104448204 CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 104436827 CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
E 104431810 ABC transporter I family member 19 K12608 CAF16; CCR4-NOT complex subunit CAF16
E 104456885 ABC transporter I family member 20 K12608 CAF16; CCR4-NOT complex subunit CAF16
D Pan complex
D Other 3'-5' decay factors
E 104449117 poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 104425678 uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 104421971 DExH-box ATP-dependent RNA helicase DExH3 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 104454062 DExH-box ATP-dependent RNA helicase DExH3 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 104425567 DExH-box ATP-dependent RNA helicase DExH1 isoform X2 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 104453748 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 104442350 DExH-box ATP-dependent RNA helicase DExH6 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 104454523 3'-5' exoribonuclease 1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 104421455 uncharacterized protein LOC104421455 isoform X1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 104456396 nuclear exosome regulator NRDE2 isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 104419229 protein RST1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 104433914 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 104438557 enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 104438537 enolase 1 isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 104421210 enolase 1, chloroplastic K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 104422419 cytosolic enolase 3 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 104443314 LOW QUALITY PROTEIN: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 104422623 polyribonucleotide nucleotidyltransferase 2, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 104449962 ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 104437807 ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 104436270 ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 104436541 LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase 3 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 104440310 ATP-dependent 6-phosphofructokinase 3 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 104441179 ATP-dependent 6-phosphofructokinase 2 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 104418330 ATP-dependent 6-phosphofructokinase 5, chloroplastic K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 104419853 LOW QUALITY PROTEIN: heat shock 70 kDa protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 104452953 heat shock 70 kDa protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 120288266 LOW QUALITY PROTEIN: heat shock 70 kDa protein, mitochondrial-like K04043 dnaK; molecular chaperone DnaK
E 104433762 chaperonin 60 subunit beta 2, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 104449971 chaperonin CPN60-like 2, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 104453858 chaperonin 60 subunit beta 4, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 104414388 chaperonin CPN60-2, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 104457036 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 104432552 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 104450961 exosome complex component RRP41 homolog isoform X1 K11600 RRP41; exosome complex component RRP41
E 104454005 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024