+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Eucalyptus grandis (rose gum)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        104448757 LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        104445284 LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        120293337 LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        104453152 LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        104454646 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        104421263 uncharacterized protein LOC104421263	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        104452609 uncharacterized protein LOC104452609	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        104418196 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        120292685 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        104423845 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        104414271 DNA-directed RNA polymerases II, IV and V subunit 9A	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        104436751 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104437304 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104425366 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104440336 LOW QUALITY PROTEIN: DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        120295350 DNA-directed RNA polymerase V subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104456272 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        104445264 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        104425878 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        104439661 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        104441805 DNA-directed RNA polymerase IV subunit 1 isoform X1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        104421868 DNA-directed RNA polymerase V subunit 1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        104435893 DNA-directed RNA polymerases IV and V subunit 2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        104414578 DNA-directed RNA polymerase subunit 7-like protein	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        104414628 DNA-directed RNA polymerase V subunit 7 isoform X1	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        104431158 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        104422474 transcription initiation factor IIA large subunit	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        104448037 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        104444836 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        104418814 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        104456868 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        104422271 LOW QUALITY PROTEIN: TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        104425251 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        104419885 transcription initiation factor TFIID subunit 1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        104426099 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        104449278 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        120292137 transcription initiation factor TFIID subunit 4b-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        120294596 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        104437599 transcription initiation factor TFIID subunit 5 isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        104448176 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        104424687 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        120286021 transcription initiation factor TFIID subunit 6-like isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        104433780 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        104439595 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        104422026 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        104441249 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        104414134 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        104454665 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        104433433 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        104455414 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        104450011 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        104425654 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        104435930 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        104421424 transcription initiation factor IIE subunit alpha	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        104441779 general transcription factor IIE subunit 2	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        120286494 uncharacterized protein LOC120286494	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        104445649 transcription initiation factor IIF subunit alpha isoform X1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        104448976 transcription initiation factor IIF subunit beta isoform X1	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        104454199 general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        104422047 general transcription and DNA repair factor IIH subunit TFB1-1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        104421682 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        104453007 general transcription and DNA repair factor IIH subunit TFB4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        104445290 general transcription and DNA repair factor IIH subunit TFB2 isoform X1	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        104443830 general transcription and DNA repair factor IIH helicase subunit XPB1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        104426669 general transcription and DNA repair factor IIH helicase subunit XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        104443736 general transcription and DNA repair factor IIH subunit TFB5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        104425813 cyclin-dependent kinase D-3	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        104429702 uncharacterized protein LOC104429702	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        104432304 cyclin-H1-1 isoform X1	K06634 CCNH; cyclin H 
E        104414823 uncharacterized protein LOC104414823 isoform X3	K06634 CCNH; cyclin H 
E        120285977 uncharacterized protein LOC120285977 isoform X1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        104422901 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        104432959 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        104438516 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        104448704 mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        104436429 mediator of RNA polymerase II transcription subunit 20a	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        104438002 mediator of RNA polymerase II transcription subunit 22b	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        104429607 mediator of RNA polymerase II transcription subunit 22b-like isoform X1	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        104449407 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        120295687 mediator of RNA polymerase II transcription subunit 28-like	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        104446336 mediator of RNA polymerase II transcription subunit 7a	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        104438547 mediator of RNA polymerase II transcription subunit 10b isoform X1	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        104453601 mediator of RNA polymerase II transcription subunit 21 isoform X1	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        104453594 mediator of RNA polymerase II transcription subunit 21-like isoform X1	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        104453603 mediator of RNA polymerase II transcription subunit 21-like	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        120295385 mediator of RNA polymerase II transcription subunit 21-like	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        104450061 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
D      CDK-module
E        104415974 cyclin-dependent kinase E-1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        104416304 cyclin-C1-2 isoform X3	K15161 CCNC; cyclin-C 
E        104422286 mediator of RNA polymerase II transcription subunit 13 isoform X1	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        104433236 mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        104441266 mediator of RNA polymerase II transcription subunit 25	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        104426076 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        104452639 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        104457023 mediator of RNA polymerase II transcription subunit 33B isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        104414903 mediator of RNA polymerase II transcription subunit 33A isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        104433338 mediator of RNA polymerase II transcription subunit 33A isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        104426623 histone acetyltransferase GCN5 isoform X1	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        104426624 LOW QUALITY PROTEIN: histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        104419662 transformation/transcription domain-associated protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        104434577 transcriptional adapter ADA2a isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        104447525 transcriptional adapter ADA2 isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        104426099 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        104449278 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        120292137 transcription initiation factor TFIID subunit 4b-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        120294596 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        104437599 transcription initiation factor TFIID subunit 5 isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        104448176 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        104424687 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        120286021 transcription initiation factor TFIID subunit 6-like isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        104433780 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        104414134 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        104454665 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        104433433 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        104450011 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        104425654 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        104432627 SAGA-associated factor 11 isoform X1	K11363 SGF11; SAGA-associated factor 11 
E        104422654 SAGA-associated factor 29 homolog A	K11364 SGF29; SAGA-associated factor 29 
E        104419141 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        104438409 ubiquitin C-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        104425527 uncharacterized protein LOC104425527	K12830 SF3B3; splicing factor 3B subunit 3 
E        104421851 spliceosome-associated protein 130 A	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        104443214 ATP-dependent helicase BRM	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        104432592 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        104450524 SWI/SNF complex subunit SWI3C	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        104448964 LOW QUALITY PROTEIN: SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        104418828 SWI/SNF complex subunit SWI3D	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        104418309 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        104422708 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        104421522 actin-related protein 4	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        104432592 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        104444006 RNA polymerase II transcriptional coactivator KELP	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        104453932 protein SHORT ROOT IN SALT MEDIUM 1 isoform X1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        104420976 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        104454050 transcription elongation factor TFIIS isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        104454038 transcription elongation factor SPT4 homolog 2	K15171 SUPT4H1; transcription elongation factor SPT4 
E        104449636 LOW QUALITY PROTEIN: putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        104427460 transcription elongation factor SPT6 homolog	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        104438418 polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        104441387 polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        104424329 LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        104452616 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        104452614 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        104452615 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        104421172 uncharacterized protein LOC104421172 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        104444897 LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        104433366 serine/threonine-protein phosphatase PP1 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        104432280 serine/threonine-protein phosphatase PP1 isozyme 9	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        104432529 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        104432687 serine/threonine-protein phosphatase PP1 isozyme 2	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        104414514 serine/threonine-protein phosphatase PP1 isozyme 3 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        104422547 serine/threonine-protein phosphatase PP1 isozyme 3	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        104416909 serine/threonine-protein phosphatase PP1 isozyme 3	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        104415613 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        120290871 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        104433139 symplekin	K06100 SYMPK; symplekin 
E        104449207 uncharacterized protein LOC104449207 isoform X1	K06100 SYMPK; symplekin 
E        104421960 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X2	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        120286630 LOW QUALITY PROTEIN: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        104448827 5'-3' exoribonuclease 3 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        104441971 NAD-capped RNA hydrolase DXO1	K14845 RAI1; RAT1-interacting protein 
E        104443498 regulation of nuclear pre-mRNA domain-containing protein 1A	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        104414718 regulation of nuclear pre-mRNA domain-containing protein 1B	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        104418220 regulation of nuclear pre-mRNA domain-containing protein 1B	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        104422748 LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
E        120292721 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        104449920 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        104414780 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        104436428 protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        104426005 protein LEO1 homolog	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        104445308 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        104437015 ELL-associated factor 1	K15186 EAF; ELL-associated factor 
E        104449687 suppressor protein SRP40	K15186 EAF; ELL-associated factor 
E        104444614 LOW QUALITY PROTEIN: cyclin-T1-5	K15188 CCNT; cyclin T 
E        104414861 cyclin-T1-4 isoform X2	K15188 CCNT; cyclin T 
E        120285887 LOW QUALITY PROTEIN: cyclin-T1-5-like	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        104444614 LOW QUALITY PROTEIN: cyclin-T1-5	K15188 CCNT; cyclin T 
E        104414861 cyclin-T1-4 isoform X2	K15188 CCNT; cyclin T 
E        120285887 LOW QUALITY PROTEIN: cyclin-T1-5-like	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        104438248 probable RNA methyltransferase At5g51130 isoform X1	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        104453230 la-related protein 6C	K15191 LARP7; La-related protein 7 
E        104440791 la-related protein 6A	K15191 LARP7; La-related protein 7 
E        104444614 LOW QUALITY PROTEIN: cyclin-T1-5	K15188 CCNT; cyclin T 
E        104414861 cyclin-T1-4 isoform X2	K15188 CCNT; cyclin T 
E        120285887 LOW QUALITY PROTEIN: cyclin-T1-5-like	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        104441303 TATA-binding protein-associated factor BTAF1 isoform X1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        104421251 protein Dr1 homolog isoform X1	K21751 DR1; down-regulator of transcription 1 
E        104454511 dr1-associated corepressor isoform X1	K21752 DRAP1; Dr1-associated corepressor 
E        104421439 dr1-associated corepressor	K21752 DRAP1; Dr1-associated corepressor 
E        120289057 LOW QUALITY PROTEIN: dr1-associated corepressor-like	K21752 DRAP1; Dr1-associated corepressor 
E        104440708 LOW QUALITY PROTEIN: protein spt2	K15193 SPTY2D1; protein SPT2 
E        104445305 LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        104426379 RNA polymerase II C-terminal domain phosphatase-like 2	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        104426380 RNA polymerase II C-terminal domain phosphatase-like 2	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        104427936 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        104439758 LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        104453549 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        104437552 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        104425954 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        104427937 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        120293688 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        104433138 CTD small phosphatase-like protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        104454396 CTD small phosphatase-like protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        104440866 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        104443496 protein IWS1 homolog 1 isoform X1	K17498 SPN1; transcription factor SPN1 
E        120293521 protein IWS1 homolog 1-like	K17498 SPN1; transcription factor SPN1 
E        104453454 LOW QUALITY PROTEIN: transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        104445679 transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        104431245 LOW QUALITY PROTEIN: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        104428246 RNA polymerase II-associated protein 3 isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        104446983 agamous-like MADS-box protein AGL61	K12412 MCM1; pheromone receptor transcription factor 
E        108956750 agamous-like MADS-box protein AGL62	K12412 MCM1; pheromone receptor transcription factor 
E        104456459 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        104449257 GPN-loop GTPase QQT1	K24104 GPN; GPN-loop GTPase 
E        104425362 GPN-loop GTPase QQT2	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        104422539 DNA-directed RNA polymerase III subunit 1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        104432857 DNA-directed RNA polymerase III subunit 2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        104451022 DNA-directed RNA polymerases I and III subunit rpac1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        104452942 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
E        104452947 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        104424424 DNA-directed RNA polymerase III subunit rpc3	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        104438141 DNA-directed RNA polymerase III subunit RPC4 isoform X2	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        104424353 DNA-directed RNA polymerase III subunit rpc4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        120286850 uncharacterized protein LOC120286850 isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        104456864 DNA-directed RNA polymerase III subunit RPC5 isoform X1	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        104421729 DNA-directed RNA polymerase III subunit RPC6 isoform X3	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        104448923 DNA-directed RNA polymerase III subunit RPC6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        104449926 DNA-directed RNA polymerase III subunit rpc31	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        104427437 DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        104414757 uncharacterized protein LOC104414757	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        104445348 DNA-directed RNA polymerase III subunit RPC10 isoform X2	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        104436751 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104437304 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104425366 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104440336 LOW QUALITY PROTEIN: DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        120295350 DNA-directed RNA polymerase V subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104456272 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        104445264 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        104425878 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        104439661 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        104423584 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
E        104424623 transcription factor IIIA isoform X1	K09191 GTF3A; general transcription factor IIIA 
E        104437804 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
E        104453105 transcription factor IIIA-like	K09191 GTF3A; general transcription factor IIIA 
E        104423836 transcription factor IIIA-like	K09191 GTF3A; general transcription factor IIIA 
E        120295892 transcription factor IIIA-like	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        104422271 LOW QUALITY PROTEIN: TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        104425251 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        104443341 transcription factor IIIB 60 kDa subunit isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        104433220 plant-specific TFIIB-related protein PTF2	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        104439057 uncharacterized protein LOC104439057 isoform X1	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        104422989 uncharacterized protein LOC104422989	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        104425637 general transcription factor 3C polypeptide 2 isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        104453084 general transcription factor 3C polypeptide 3 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
D      TFIIIC, fungi type
E        104453084 general transcription factor 3C polypeptide 3 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        104436825 uncharacterized protein LOC104436825	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        104441192 snRNA-activating protein complex subunit isoform X1	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        104453737 repressor of RNA polymerase III transcription MAF1 homolog	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        104425470 LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit 1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        104454525 DNA-directed RNA polymerase I subunit 2 isoform X1	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        104451022 DNA-directed RNA polymerases I and III subunit rpac1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        104452942 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
E        104452947 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        104450005 DNA-directed RNA polymerase I subunit rpa49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        104436735 DNA-directed RNA polymerase I subunit RPA12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
E        104456650 DNA-directed RNA polymerase I subunit RPA12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
E        104430037 DNA-directed RNA polymerase I subunit RPA12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
E        120291080 DNA-directed RNA polymerase I subunit RPA12-like	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        104436751 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104437304 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104425366 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104440336 LOW QUALITY PROTEIN: DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        120295350 DNA-directed RNA polymerase V subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        104456272 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        104445264 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        104425878 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        104439661 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        104422271 LOW QUALITY PROTEIN: TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        104425251 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        104443977 high mobility group B protein 6	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        104422859 RNA polymerase I-specific transcription initiation factor rrn3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        120288830 LOW QUALITY PROTEIN: RNA polymerase I-specific transcription initiation factor rrn3-like	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        104418765 DNA ligase 1	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        104454038 transcription elongation factor SPT4 homolog 2	K15171 SUPT4H1; transcription elongation factor SPT4 
E        104449636 LOW QUALITY PROTEIN: putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        104415085 ISWI chromatin-remodeling complex ATPase CHR11	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        9829690 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        9829634 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
D      Sigma factors
E        104450632 RNA polymerase sigma factor sigA	K03086 rpoD; RNA polymerase primary sigma factor 
E        104415229 LOW QUALITY PROTEIN: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial	K03093 sigI; RNA polymerase sigma-I factor 
E        104436273 RNA polymerase sigma factor sigC	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        104444836 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        104418814 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        104456868 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        104421424 transcription initiation factor IIE subunit alpha	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 9, 2024