+F Repair protein KO #

  DNA Repair and Recombination Proteins - Anaerobutyricum hallii

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E EHLA_0281 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E EHLA_0183 HhH-GPD superfamily base excision DNA repair protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E EHLA_2849 HhH-GPD superfamily base excision DNA repair protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E EHLA_2498 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E EHLA_1783 Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D EHLA_0583 Nudix hydrolase domain profile. K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EHLA_2551 NUDIX hydrolase domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EHLA_2621 NUDIX hydrolase domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EHLA_0733 NUDIX hydrolase domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EHLA_1530 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D EHLA_2767 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E EHLA_0281 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E EHLA_0183 HhH-GPD superfamily base excision DNA repair protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E EHLA_2498 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E EHLA_0139 AP endonuclease 1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E EHLA_0267 deoxyribonuclease IV (phage-T4-induced) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E EHLA_1049 recJ: single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E EHLA_2439 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E EHLA_1121 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E EHLA_2622 adenosinetriphosphatase K03701 uvrA; excinuclease ABC subunit A E EHLA_2623 UvrABC system, subunit B K03702 uvrB; excinuclease ABC subunit B E EHLA_0319 UvrABC system, subunit C K03703 uvrC; excinuclease ABC subunit C E EHLA_0812 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EHLA_2119 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EHLA_1121 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E EHLA_2439 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F EHLA_2916 DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F EHLA_2915 DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F EHLA_2782 DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F EHLA_0619 DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F EHLA_3143 DNA helicase K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E EHLA_2146 MutS domain V K03555 mutS; DNA mismatch repair protein MutS E EHLA_2975 adenosinetriphosphatase K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E EHLA_2145 Ribosomal protein S5 domain 2-type fold, subgroup K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E EHLA_1240 exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E EHLA_1241 exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E EHLA_0313 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E EHLA_2426 DNA-directed DNA polymerase K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E EHLA_0002 DNA-directed DNA polymerase K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E EHLA_1816 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E EHLA_0024 DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E EHLA_3220 DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E EHLA_2439 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E EHLA_0812 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EHLA_2119 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EHLA_0180 Nucleic acid-binding, OB-fold K03111 ssb; single-strand DNA-binding protein E EHLA_1476 Nucleic acid-binding, OB-fold K03111 ssb; single-strand DNA-binding protein E EHLA_2069 Nucleic acid-binding, OB-fold K03111 ssb; single-strand DNA-binding protein E EHLA_2601 Nucleic acid-binding, OB-fold K03111 ssb; single-strand DNA-binding protein E EHLA_3314 Nucleic acid-binding, OB-fold K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E EHLA_2769 UvrD-like helicase C-terminal domain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E EHLA_0948 AAA+ ATPase domain K03553 recA; recombination protein RecA E EHLA_1777 DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E EHLA_1776 DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E EHLA_0622 Type III restriction enzyme, res subunit K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E EHLA_1023 Putative exonuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E EHLA_1024 Type 5 capsule protein repressor C-terminal domain K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E EHLA_0948 AAA+ ATPase domain K03553 recA; recombination protein RecA E EHLA_1662 Subunit ChlI of Mg-chelatase K04485 radA; DNA repair protein RadA/Sms E EHLA_0004 DNA-binding, RecF, conserved site K03629 recF; DNA replication and repair protein RecF E EHLA_1190 DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E EHLA_2533 Putative ATP-dependent DNA helicase recG C-terminal K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E EHLA_1744 ATP-dependent DNA helicase RecG, C-terminal domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E EHLA_1049 recJ: single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E EHLA_1299 Nucleic acid-binding, OB-fold K03584 recO; DNA repair protein RecO (recombination protein O) E EHLA_3222 Toprim domain K06187 recR; recombination protein RecR E EHLA_1247 P-loop containing nucleoside triphosphate hydrolase K03631 recN; DNA repair protein RecN (Recombination protein N) E EHLA_0615 Holliday junction resolvase RecU [recU]. K03700 recU; recombination protein U E EHLA_1777 DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E EHLA_1776 DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E EHLA_0939 DNA helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E EHLA_0938 DNA helicase K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E EHLA_1971 cas1: CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E EHLA_1636 cas1: CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E EHLA_2337 cas1: CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E EHLA_1023 Putative exonuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E EHLA_1024 Type 5 capsule protein repressor C-terminal domain K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F EHLA_0006 DNA topoisomerase (ATP-hydrolysing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F EHLA_0718 DNA topoisomerase (ATP-hydrolysing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F EHLA_0005 DNA topoisomerase (ATP-hydrolysing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F EHLA_0717 DNA topoisomerase (ATP-hydrolysing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F EHLA_1327 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F EHLA_3065 Bacterial DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F EHLA_1049 recJ: single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F EHLA_1299 Nucleic acid-binding, OB-fold K03584 recO; DNA repair protein RecO (recombination protein O) F EHLA_3222 Toprim domain K06187 recR; recombination protein RecR F EHLA_2439 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F EHLA_0197 DNA helicase/RNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F EHLA_2622 adenosinetriphosphatase K03701 uvrA; excinuclease ABC subunit A F EHLA_2623 UvrABC system, subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D EHLA_2151 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D EHLA_2547 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D EHLA_1424 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D EHLA_1512 DNA polymerase, Y-family, little finger domain K03502 umuC; DNA polymerase V D EHLA_1579 DNA polymerase type-Y, HhH motif K03502 umuC; DNA polymerase V C Other SOS response factors D EHLA_0948 AAA+ ATPase domain K03553 recA; recombination protein RecA D EHLA_1720 Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D EHLA_1425 Peptidase S24/S26A/S26B/S26C K01356 lexA; repressor LexA [EC:3.4.21.88] D EHLA_1247 P-loop containing nucleoside triphosphate hydrolase K03631 recN; DNA repair protein RecN (Recombination protein N) D EHLA_0180 Nucleic acid-binding, OB-fold K03111 ssb; single-strand DNA-binding protein D EHLA_1476 Nucleic acid-binding, OB-fold K03111 ssb; single-strand DNA-binding protein D EHLA_2069 Nucleic acid-binding, OB-fold K03111 ssb; single-strand DNA-binding protein D EHLA_2601 Nucleic acid-binding, OB-fold K03111 ssb; single-strand DNA-binding protein D EHLA_3314 Nucleic acid-binding, OB-fold K03111 ssb; single-strand DNA-binding protein D EHLA_0949 Regulatory protein RecX [recX]. K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D EHLA_0583 Nudix hydrolase domain profile. K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EHLA_2551 NUDIX hydrolase domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EHLA_2621 NUDIX hydrolase domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EHLA_0733 NUDIX hydrolase domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EHLA_1530 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D EHLA_2767 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D EHLA_1109 DHHA1 domain K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024