+D Transcription factors KO #

  Transcription Factors - Edwardsiella ictaluri

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D NT01EI_1483 DNA-cytosine methyltransferase, putative K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D NT01EI_3776 putative transcriptional regulator, AraC family K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D NT01EI_1970 transcriptional regulator, AraC family K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator D NT01EI_0624 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D NT01EI_2620 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D NT01EI_1699 transcriptional regulator, AraC family K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator D NT01EI_0940 transcriptional regulator, AraC family K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D NT01EI_1776 melibiose operon regulatory protein, putative K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D NT01EI_3113 transcriptional regulator, AraC family protein K25495 nimR; AraC family transcriptional regulator, regulator of nimT C LysR family D NT01EI_0821 regulator of Gcv operon K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D NT01EI_0082 transcriptional regulator, LysR family K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D NT01EI_0675 transcriptional activator protein NhaR, putative K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D NT01EI_3840 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D NT01EI_3363 chromosome initiation inhibitor, putative K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D NT01EI_0721 transcriptional regulator, LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D NT01EI_1475 transcriptional regulator, LysR family K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator D NT01EI_1714 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D NT01EI_0999 LysR substrate binding domain protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D NT01EI_1478 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D NT01EI_3390 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D NT01EI_3483 hypothetical protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D NT01EI_3823 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D NT01EI_2540 transcriptional regulator, DeoR family K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D NT01EI_3680 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D NT01EI_0774 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D NT01EI_2818 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D NT01EI_1755 transcriptional regulator, DeoR family K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D NT01EI_3656 HTH-type transcriptional regulator UlaR, putative K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor C LacI family D NT01EI_3268 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NT01EI_3890 ribose operon repressor, putative K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NT01EI_3801 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D NT01EI_0725 transcriptional regulator FruR, putative K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D NT01EI_2110 Periplasmic binding proteins and sugar binding domain of the LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D NT01EI_0126 transcriptional regulator, GntR family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D NT01EI_1630 fatty acid metabolism transcriptional regulator FadR, putative K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D NT01EI_0757 pyruvate dehydrogenase complex repressor, putative K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D NT01EI_2584 transcriptional regulator, GntR family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D NT01EI_0497 transcriptional regulator, GntR family K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D NT01EI_2343 transcriptional regulator, GntR family/aminotransferase domain protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D NT01EI_1100 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D NT01EI_0051 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator D NT01EI_2465 transcriptional regulator, TetR family K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D NT01EI_2618 transcriptional regulator, TetR family K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D NT01EI_3838 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D NT01EI_2622 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D NT01EI_3901 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D NT01EI_2485 leucine-responsive regulatory protein, putative K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D NT01EI_1088 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D NT01EI_2880 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D NT01EI_2513 transcriptional regulator, LuxR family K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D NT01EI_3669 transcriptional regulator MalT, LuxR family, putative K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D NT01EI_2101 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D NT01EI_3093 transcriptional regulator, MarR family K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family D NT01EI_1140 Cu(I)-responsive transcriptional regulator, putative K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D NT01EI_3567 zinc(II)-responsive transcriptional regulator, putative K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA C Fur family D NT01EI_2899 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D NT01EI_0239 zinc uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D NT01EI_1116 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D NT01EI_1731 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D NT01EI_3665 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D NT01EI_1963 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D NT01EI_3184 iron-sulfur cluster assembly transcription factor IscR, putative K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D NT01EI_0417 transcriptional repressor, NsrR family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D NT01EI_1974 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D NT01EI_1148 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family C Other families D NT01EI_1606 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D NT01EI_0161 bifunctional protein BirA, putative K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D NT01EI_3506 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D NT01EI_0623 trp operon repressor, putative K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D NT01EI_0447 hypothetical protein K07724 ner; Ner family transcriptional regulator D NT01EI_0708 HTH-type transcriptional regulator SgrR, putative K11925 sgrR; SgrR family transcriptional regulator D NT01EI_1043 hypothetical protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D NT01EI_3288 transcriptional regulator, Fis family K15836 fhlA; formate hydrogenlyase transcriptional activator D NT01EI_3701 carbohydrate diacid regulator, putative K02647 cdaR; carbohydrate diacid regulator D NT01EI_1022 molybdenum-pterin binding protein, putative K02019 modE; molybdate transport system regulatory protein D NT01EI_2839 transcriptional regulator, ModE, putative K02019 modE; molybdate transport system regulatory protein D NT01EI_3128 hypothetical protein K07726 K07726; putative transcriptional regulator D NT01EI_3447 hypothetical protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family D NT01EI_0269 nickel-responsive transcriptional regulator NikR, putative K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D NT01EI_3804 met repressor MetJ, putative K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D NT01EI_2124 bifunctional protein PutA, putative K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D NT01EI_1076 BolA-like protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D NT01EI_0148 transcriptional activator RfaH, putative K05785 rfaH; transcriptional antiterminator RfaH D NT01EI_0313 transcriptional repressor, ArgR family K03402 argR; transcriptional regulator of arginine metabolism D NT01EI_0445 arginine repressor, putative K03402 argR; transcriptional regulator of arginine metabolism D NT01EI_2910 N-acetylglucosamine repressor, putative K02565 nagC; N-acetylglucosamine repressor D NT01EI_2071 ROK family protein K15545 mlc; transcriptional regulator of PTS gene D NT01EI_1839 transcriptional regulatory protein TyrR, putative K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D NT01EI_0857 transcriptional regulator, Cad family K03765 cadC; transcriptional activator of cad operon D NT01EI_1199 hypothetical protein K03567 gcvR; glycine cleavage system transcriptional repressor D NT01EI_1831 psp operon transcriptional activator, putative K03974 pspF; psp operon transcriptional activator D NT01EI_1834 phage shock protein C, putative K03973 pspC; phage shock protein C D NT01EI_3150 transcriptional regulator, AlpA family K07733 alpA; prophage regulatory protein D NT01EI_0285 hypothetical protein K07735 algH; putative transcriptional regulator D NT01EI_2969 hypothetical protein K08277 caiF; transcriptional activator CaiF D NT01EI_0790 RNA polymerase-binding protein DksA, putative K06204 dksA; RNA polymerase-binding transcription factor D NT01EI_1055 transcriptional regulator NrdR, putative K07738 nrdR; transcriptional repressor NrdR D NT01EI_0914 sigma factor-binding protein family K11926 crl; sigma factor-binding protein Crl D NT01EI_0727 mraZ protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0