+F Repair protein KO #

  DNA Repair and Recombination Proteins - Edwardsiella ictaluri

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D NT01EI_2523 methylated DNA protein cysteine S-methyltransferase family, putative K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D NT01EI_2885 deoxyribodipyrimidine photo-lyase, putative K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E NT01EI_3061 uracil-DNA glycosylase, putative K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NT01EI_0272 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NT01EI_2092 endonuclease III, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D NT01EI_0746 mutator MutT protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NT01EI_1175 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NT01EI_2593 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NT01EI_0052 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D NT01EI_2523 methylated DNA protein cysteine S-methyltransferase family, putative K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D NT01EI_2885 deoxyribodipyrimidine photo-lyase, putative K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E NT01EI_3061 uracil-DNA glycosylase, putative K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NT01EI_0523 hypothetical protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E NT01EI_0272 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NT01EI_0017 DNA-3-methyladenine glycosylase 1, putative K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E NT01EI_0059 formamidopyrimidine-DNA glycosylase, putative K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E NT01EI_2874 endonuclease VIII, putative K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E NT01EI_2092 endonuclease III, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E NT01EI_1653 exodeoxyribonuclease III, putative K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] E NT01EI_1290 apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E NT01EI_0181 endonuclease V K05982 nfi; deoxyribonuclease V [EC:3.1.21.7] D RecJ E NT01EI_3340 single-stranded-DNA-specific exonuclease RecJ, putative K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E NT01EI_1249 DNA ligase, NAD-dependent, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E NT01EI_3873 DNA polymerase I, putative K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E NT01EI_3537 excinuclease ABC, subunit A, putative K03701 uvrA; excinuclease ABC subunit A E NT01EI_2825 excinuclease ABC subunit B, putative K03702 uvrB; excinuclease ABC subunit B E NT01EI_2281 excinuclease ABC subunit C, putative K03703 uvrC; excinuclease ABC subunit C E NT01EI_0118 DNA helicase II, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NT01EI_3873 DNA polymerase I, putative K02335 polA; DNA polymerase I [EC:2.7.7.7] E NT01EI_1249 DNA ligase, NAD-dependent, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F NT01EI_0174 DNA-directed RNA polymerase, beta subunit, putative K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F NT01EI_0175 DNA-directed RNA polymerase, beta' subunit, putative K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F NT01EI_3570 DNA-directed RNA polymerase subunit alpha, putative K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F NT01EI_0033 DNA-directed RNA polymerase, omega subunit, putative K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F NT01EI_2332 transcription-repair coupling factor, putative K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E NT01EI_3249 DNA mismatch repair protein MutS, putative K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E NT01EI_0407 DNA mismatch repair protein MutL, putative K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E NT01EI_3260 DNA mismatch repair endonuclease MutH, putative K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E NT01EI_1286 exonuclease, putative K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E NT01EI_3155 exodeoxyribonuclease VII, large subunit, putative K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E NT01EI_1063 exodeoxyribonuclease VII, small subunit, putative K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E NT01EI_0854 DNA polymerase III, subunit alpha, putative K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E NT01EI_0002 DNA polymerase III, beta subunit, putative K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E NT01EI_3456 DNA polymerase III, subunit chi, putative K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E NT01EI_2938 DNA polymerase III, delta subunit, putative K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E NT01EI_2363 DNA polymerase III subunit delta', putative K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E NT01EI_3193 DNA polymerase III, epsilon subunit, putative K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E NT01EI_1108 DNA polymerase III subunit tau, putative K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E NT01EI_0552 DNA polymerase III, psi subunit, putative K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E NT01EI_1700 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E NT01EI_1249 DNA ligase, NAD-dependent, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E NT01EI_0118 DNA helicase II, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NT01EI_3536 single-stranded DNA-binding protein, putative K03111 ssb; single-strand DNA-binding protein E NT01EI_3136 DNA adenine methylase, putative K06223 dam; DNA adenine methylase [EC:2.1.1.72] E NT01EI_3149 D12 class N6 adenine-specific DNA methyltransferase, putative K06223 dam; DNA adenine methylase [EC:2.1.1.72] E NT01EI_3621 DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E NT01EI_0808 exodeoxyribonuclease V, beta subunit, putative K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E NT01EI_0806 exodeoxyribonuclease V, gamma subunit, putative K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E NT01EI_0809 exodeoxyribonuclease V, alpha subunit, putative K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E NT01EI_3241 protein RecA, putative K03553 recA; recombination protein RecA E NT01EI_1598 holliday junction DNA helicase RuvA, putative K03550 ruvA; holliday junction DNA helicase RuvA E NT01EI_1599 holliday junction DNA helicase RuvB, putative K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NT01EI_1597 crossover junction endodeoxyribonuclease RuvC, putative K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E NT01EI_3802 primosomal protein N', putative K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E NT01EI_1105 Primosomal replication protein PriB and PriC K04067 priC; primosomal replication protein N'' E NT01EI_1286 exonuclease, putative K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E NT01EI_1181 exonuclease SbcC, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E NT01EI_1182 exonuclease SbcD, putative K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E NT01EI_3241 protein RecA, putative K03553 recA; recombination protein RecA E NT01EI_0619 DNA repair protein RadA, putative K04485 radA; DNA repair protein RadA/Sms E NT01EI_0003 DNA replication and repair protein RecF, putative K03629 recF; DNA replication and repair protein RecF E NT01EI_0030 ATP-dependent DNA helicase RecG, putative K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E NT01EI_0351 Divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E NT01EI_3340 single-stranded-DNA-specific exonuclease RecJ, putative K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E NT01EI_3030 DNA repair protein RecO, putative K03584 recO; DNA repair protein RecO (recombination protein O) E NT01EI_1110 recombination protein RecR, putative K06187 recR; recombination protein RecR E NT01EI_3064 DNA repair protein RecN, putative K03631 recN; DNA repair protein RecN (Recombination protein N) E NT01EI_1176 Putative exonuclease, RdgC K03554 rdgC; recombination associated protein RdgC E NT01EI_1598 holliday junction DNA helicase RuvA, putative K03550 ruvA; holliday junction DNA helicase RuvA E NT01EI_1599 holliday junction DNA helicase RuvB, putative K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NT01EI_1597 crossover junction endodeoxyribonuclease RuvC, putative K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E NT01EI_2606 Type III restriction enzyme, res subunit K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E NT01EI_1181 exonuclease SbcC, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E NT01EI_1182 exonuclease SbcD, putative K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F NT01EI_2630 DNA gyrase, A subunit, putative K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F NT01EI_0004 DNA gyrase, B subunit, putative K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F NT01EI_1709 DNA topoisomerase I, putative K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F NT01EI_0183 DNA-binding protein HU-alpha, putative K05787 hupA; DNA-binding protein HU-alpha F NT01EI_1082 DNA-binding protein HU-beta, putative K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F NT01EI_2041 hypothetical protein K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-] F NT01EI_3340 single-stranded-DNA-specific exonuclease RecJ, putative K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F NT01EI_3030 DNA repair protein RecO, putative K03584 recO; DNA repair protein RecO (recombination protein O) F NT01EI_1110 recombination protein RecR, putative K06187 recR; recombination protein RecR F NT01EI_1249 DNA ligase, NAD-dependent, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F NT01EI_3506 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F NT01EI_1892 integration host factor, alpha subunit, putative K04764 ihfA; integration host factor subunit alpha F NT01EI_2454 integration host factor, beta subunit, putative K05788 ihfB; integration host factor subunit beta E Supressor F NT01EI_1286 exonuclease, putative K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F NT01EI_0122 ATP-dependent DNA helicase RecQ, putative K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F NT01EI_3537 excinuclease ABC, subunit A, putative K03701 uvrA; excinuclease ABC subunit A F NT01EI_2825 excinuclease ABC subunit B, putative K03702 uvrB; excinuclease ABC subunit B F NT01EI_1663 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F NT01EI_3380 H-NS histone family protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D NT01EI_0907 ImpB/MucB/SamB family protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D NT01EI_3241 protein RecA, putative K03553 recA; recombination protein RecA D NT01EI_0237 repressor LexA, putative K01356 lexA; repressor LexA [EC:3.4.21.88] D NT01EI_3064 DNA repair protein RecN, putative K03631 recN; DNA repair protein RecN (Recombination protein N) D NT01EI_0703 DNA polymerase family B protein K02336 polB; DNA polymerase II [EC:2.7.7.7] D NT01EI_3536 single-stranded DNA-binding protein, putative K03111 ssb; single-strand DNA-binding protein D NT01EI_2339 DinI-like family protein K12149 dinI; DNA-damage-inducible protein I D NT01EI_3240 regulatory protein RecX, putative K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D NT01EI_0085 ATP-dependent DNA helicase Rep, putative K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D NT01EI_1397 UvrD/REP helicase family protein K03658 helD; DNA helicase IV [EC:5.6.2.4] D NT01EI_1288 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D NT01EI_1615 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D NT01EI_0746 mutator MutT protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NT01EI_1175 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NT01EI_2593 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NT01EI_0052 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D NT01EI_2632 ribonucleoside-diphosphate reductase, alpha subunit, putative K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D NT01EI_2633 ribonucleoside-diphosphate reductase, beta subunit, putative K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 5, 2025