+E Ribosome biogenesis KO
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Ribosome Biogenesis - Escherichia coli clone D i14
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D i14_2886 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D i14_4757 yjeR; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C i14_2885 era; GTP-binding protein Era K03595 era; GTPase
C i14_3627 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C i14_0163 dksA; DnaK transcriptional regulator DksA K06204 dksA; RNA polymerase-binding transcription factor
C i14_3614 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C i14_0508 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C i14_4529 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D i14_2520 rsuA; 16S rRNA pseudouridylate synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D i14_0055 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D i14_3731 sun; 16S rRNA methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D i14_4966 rsmC; 16S ribosomal RNA m2G1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D i14_3928 rsmD; 16S rRNA m(2)G966-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D i14_3250 yggJ; 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D i14_2062 yebU; rRNA (cytosine-C(5)-)-methyltransferase RsmF K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D i14_4259 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D i14_0091 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D i14_3589 yraL; hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D i14_3965 yhiQ; putative methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D i14_2047 rrmA; 23S rRNA methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D i14_4772 yjfH; 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D i14_3623 rrmJ; 23S rRNA methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D i14_0856 ybiN; putative SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D i14_3533 ygjO; putative ribosomal RNA small subunit K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D i14_0695 ybeA; rRNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D i14_1012 yccW; hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D i14_3967 yhiR; hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D i14_0992 rlmL; 23S rRNA m(2)G2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D i14_3099 ygdE; putative RNA 2'-O-ribose methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D i14_2835 yfgB; hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D i14_3073 rumA; 23S rRNA 5-methyluridine methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D i14_0908 rumB; 23S rRNA methyluridine methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D i14_0060 yabO; 23S rRNA/tRNA pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D i14_1565 yciL; 23S rRNA pseudouridylate synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D i14_1239 rluC; 23S rRNA pseudouridylate synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D i14_2913 rluD; 23S rRNA pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D i14_1357 hypothetical protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D i14_4577 yjbC; 23S rRNA pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D i14_2901 yfiF; putative methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C i14_4968 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C i14_1218 rimJ; ribosomal-protein-S5-alanine K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C i14_0901 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C i14_1675 rimL; ribosomal-protein-L7/L12-serine K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C i14_2925 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C i14_0884 yliG; hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C i14_0955 ycaO; hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C i14_3706 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C i14_2673 yfcB; N5-glutamine S-adenosyl-L-methionine-dependent K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C i14_1350 ycfD; hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C i14_2886 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C i14_1237 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C i14_3684 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C i14_3253 yqgF; Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C i14_1642 dbpA; ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C i14_3606 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C i14_2895 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C i14_2885 era; GTP-binding protein Era K03595 era; GTPase
C i14_4756 yjeQ; ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C i14_2829 engA; GTP-binding protein EngA K03977 engA; GTPase
C i14_3627 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C i14_4765 hflX; putative GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C i14_3725 yrdC; putative ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C i14_4137 spoT; bifunctional (p)ppGpp synthetase II K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C i14_3611 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C i14_3615 yhbC; hypothetical protein K09748 rimP; ribosome maturation factor RimP
C i14_0619 ybcJ; hypothetical protein K14761 rlbA; ribosome-associated protein
C i14_0696 ybeB; hypothetical protein K09710 ybeB; ribosome-associated protein
C i14_0713 ybeY; putative metalloprotease K07042 ybeY; probable rRNA maturation factor
C i14_3624 yhbY; RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
C i14_4085 yibL; hypothetical protein K14762 yibL; ribosome-associated protein
C i14_4835 yjgA; hypothetical protein K09889 yjgA; ribosome-associated protein
C i14_3647 yhbH; putative sigma(54) modulation protein K05808 hpf; ribosome hibernation promoting factor
C i14_2915 yfiA; translation inhibitor protein RaiA K05809 raiA; ribosome-associated inhibitor A
C i14_1736 rpsV; 30S ribosomal subunit S22 K02972 sra; stationary-phase-induced ribosome-associated protein
C i14_1491 ychF; GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
C i14_1242 yceD; hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024