+E Transcription factors KO #

  Transcription Factors - Erythrobacter litoralis DSM 8509

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D Ga0102493_111565 DNA (cytosine-5)-methyltransferase 1 K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D Ga0102493_112029 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D Ga0102493_112085 DNA-binding transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Ga0102493_112920 LysR family transcriptional regulator, transcriptional activator of nhaA K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D Ga0102493_112871 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator C DeoR family C LacI family D Ga0102493_11854 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family C TetR/AcrR family D Ga0102493_111411 TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor C Lrp/AsnC family C LuxR family C MarR family C MerR family C Fur family D Ga0102493_112087 Fur family transcriptional regulator, ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Ga0102493_11844 Fur family transcriptional regulator, zinc uptake regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D Ga0102493_112997 IclR family transcriptional regulator, mhp operon transcriptional activator K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator C CRP/FNR family D Ga0102493_111577 CRP-family regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Ga0102493_112862 CRP/FNR family transcriptional regulator, anaerobic regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Ga0102493_111797 CRP/FNR family transcriptional regulator,anaerobic regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Ga0102493_113073 CRP/FNR family transcriptional regulator, anaerobic regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family D Ga0102493_112568 DNA-binding transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family D Ga0102493_112688 hypothetical protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D Ga0102493_112330 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Ga0102493_112428 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Ga0102493_111294 putative transcriptional regulator K07727 K07727; putative transcriptional regulator D Ga0102493_112579 putative transcriptional regulator K07729 K07729; putative transcriptional regulator D Ga0102493_111479 putative transcriptional regulator K07729 K07729; putative transcriptional regulator D Ga0102493_11817 putative transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D Ga0102493_11644 RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D Ga0102493_111077 DNA-binding transcriptional regulator, FrmR family K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Ga0102493_113104 BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Ga0102493_11950 parB; chromosome partitioning protein, ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Ga0102493_11962 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Ga0102493_112535 heat-inducible transcriptional repressor K03705 hrcA; heat-inducible transcriptional repressor D Ga0102493_113150 thiaminase TenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D Ga0102493_1121 thiaminase II TenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D Ga0102493_111901 psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D Ga0102493_111897 phage shock protein C K03973 pspC; phage shock protein C D Ga0102493_111979 phage shock protein C K03973 pspC; phage shock protein C D Ga0102493_112986 prophage regulatory protein K07733 alpA; prophage regulatory protein D Ga0102493_11282 transcriptional regulator K07734 paiB; transcriptional regulator D Ga0102493_111203 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D Ga0102493_11783 DnaK suppressor protein, TraR/DksA K06204 dksA; RNA polymerase-binding transcription factor D Ga0102493_112903 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D Ga0102493_112623 transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D Ga0102493_11204 MraZ protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0