+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Esox lucius (northern pike)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 105030541 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 105017860 rngtt; mRNA-capping enzyme isoform X1 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 109614561 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 105006028 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 isoform X1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 105016137 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 105026508 ramac; RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 105028015 ncbp1; nuclear cap-binding protein subunit 1 isoform X1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 105011987 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 105016251 cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 105018441 cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 105022255 cpsf7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 105023121 cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 105028688 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 105006049 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 105012753 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 105017560 cpsf2; cleavage and polyadenylation specificity factor subunit 2 isoform X1 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 105017804 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 105031073 cpsf4; cleavage and polyadenylation specificity factor subunit 4 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 105011833 fip1l1; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 105020871 pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 105023233 wdr33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 105028835 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 105016858 WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 105012949 serine/threonine-protein phosphatase alpha-2 isoform K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 105020693 serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 105024808 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 105014191 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 105024386 serine/threonine-protein phosphatase alpha-2 isoform isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 105017109 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 105007594 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 105029800 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 105014273 cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 105010849 sympk; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 105016713 snrpb; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 105014179 snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 105014836 small nuclear ribonucleoprotein Sm D3 isoform X1 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 105025457 snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 105021811 small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 105020274 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 105023769 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 105012583 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 105006251 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 105017560 cpsf2; cleavage and polyadenylation specificity factor subunit 2 isoform X1 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 105017804 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 105029800 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 105010849 sympk; symplekin K06100 SYMPK; symplekin
E 105011284 oocyte-specific histone RNA stem-loop-binding protein 2 isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 105026866 slbp; histone RNA hairpin-binding protein isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 105017870 casp8ap2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 105027778 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 105024128 supt5h; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 105028165 mettl3; N6-adenosine-methyltransferase catalytic subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 105028566 mettl14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 105019345 mettl4; methyltransferase-like protein 4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 105005717 mettl16; RNA N6-adenosine-methyltransferase METTL16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 105029016 wtap; pre-mRNA-splicing regulator WTAP isoform X1 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 105015380 pre-mRNA-splicing regulator WTAP-like isoform X1 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 105018950 virma; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 105007632 rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 105029192 rbm15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 105017137 RNA-binding protein 15-like K13190 RBM15; RNA-binding protein 15
E 105022574 zc3h13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 105020222 cbll1; E3 ubiquitin-protein ligase Hakai K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 105008533 papolg; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 105024317 papola; poly(A) polymerase alpha K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 114840653 tent2; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 105024526 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 105016143 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 105020096 rbm26; RNA-binding protein 26 isoform X1 K13192 RBM26; RNA-binding protein 26
E 105023453 fto; alpha-ketoglutarate-dependent dioxygenase FTO isoform X1 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 105029638 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 105022966 tardbp; TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
E 105025427 TAR DNA-binding protein 43-like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 105011256 dhx40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 105028533 kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 105022487 mettl8; methyltransferase-like protein 8 isoform X1 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 105013481 mettl22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 105009185 uncharacterized protein LOC105009185 isoform X1 K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 105030564 tent5a; terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 105017638 terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 105016439 tent5c; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 105010192 tent5d; terminal nucleotidyltransferase 5D isoform X2 K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 105005944 zc3h14; zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 105008921 serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
D 105023912 srrt; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 105019282 rbm8a; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 105005904 magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 105012898 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 105021606 THO complex subunit 4-A K12881 THOC4; THO complex subunit 4
E 105012335 spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 105008739 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 105017198 ccdc174; coiled-coil domain-containing protein 174 isoform X1 K25178 CCDC174; coiled-coil domain-containing protein 174
E 105013269 casc3; protein CASC3 isoform X1 K14323 CASC3; protein CASC3
E 105019766 sap18; Sin3A-associated protein, 18kDa K14324 SAP18; histone deacetylase complex subunit SAP18
E 105016423 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 105015487 pnn; pinin K13114 PNN; pinin
E 105020563 apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 105021555 acin1; apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 114830399 uncharacterized protein LOC114830399 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 105007889 RNA-binding protein with serine-rich domain 1 isoform X2 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 105027496 rnps1; RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 105015814 srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 105019902 thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 105025981 thoc2; THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 105030665 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 105012898 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 105021606 THO complex subunit 4-A K12881 THOC4; THO complex subunit 4
E 105025569 thoc5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 105030389 thoc6; THO complex subunit 6 homolog isoform X1 K13175 THOC6; THO complex subunit 6
E 105017244 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 105019705 pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 105030262 sem1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 105007755 eny2; enhancer of yellow 2 homolog K11368 ENY2; enhancer of yellow 2 transcription factor
E 105030803 eny2; enhancer of yellow 2 homolog K11368 ENY2; enhancer of yellow 2 transcription factor
E 105025766 caltractin K10840 CETN2; centrin-2
E 105015211 cetn3; centrin-3 K16466 CETN3; centrin-3
E 105016173 mcm3ap; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 105006047 nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 105011855 nucleoprotein TPR isoform X3 K09291 TPR; nucleoprotein TPR
E 105026338 mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 105017333 mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 105005644 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 105030161 nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 105013126 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 105017903 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 105026517 nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 105009047 nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 105026973 nuclear pore glycoprotein p62 isoform X1 K14306 NUP62; nuclear pore complex protein Nup62
E 105011082 nup88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88
E 105018494 nup93; nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93
E 105007221 nup98; nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 105017799 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 105021501 nup133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 105028403 nup188; nucleoporin NUP188 homolog K14311 NUP188; nuclear pore complex protein Nup188
E 105030276 nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 105025168 nup155; nuclear pore complex protein Nup155 isoform X1 K14312 NUP155; nuclear pore complex protein Nup155
E 105029516 nup160; nuclear pore complex protein Nup160 isoform X1 K14303 NUP160; nuclear pore complex protein Nup160
E 105027299 nup35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 105018122 nup205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 105024486 nuclear pore membrane glycoprotein 210 isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 105024970 nup210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 105015113 nup214; nuclear pore complex protein Nup214 isoform X2 K14317 NUP214; nuclear pore complex protein Nup214
E 105023983 nuclear envelope pore membrane protein POM 121 K14316 POM121; nuclear pore complex protein Nup121
E 105025644 nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 105027724 nup42; nucleoporin-like protein 2 K14321 NUPL2; nucleoporin-like protein 2
E 105006069 ndc1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 105016481 nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 105006555 nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 105016384 E3 SUMO-protein ligase RanBP2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 105019899 sentrin-specific protease 2-like K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 105026323 aaas; aladin K14320 AAAS; aladin
E 105015211 cetn3; centrin-3 K16466 CETN3; centrin-3
E 105014169 gle1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 105010949 nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 105026736 nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 105024405 nxt2; NTF2-related export protein 2 isoform X1 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 105028585 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 105022884 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 105013968 acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 105020972 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 105031521 acidic leucine-rich nuclear phosphoprotein 32 family member D K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 105010829 tumor necrosis factor ligand superfamily member 13-like K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 105011411 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 105009716 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 105026381 elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 105020785 elavl2; ELAV-like protein 2 isoform X3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 105027787 elavl3; ELAV-like protein 3 isoform X2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 105027875 faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 105006106 transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 105029745 transitional endoplasmic reticulum ATPase-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 105025565 transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 105026456 vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 105012068 transportin-2 K18727 TNPO2; transportin-2
E 105013145 transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 105008447 exportin-1 isoform X1 K14290 XPO1; exportin-1
E 105021538 exportin-1 K14290 XPO1; exportin-1
E 105014757 xpo7; exportin-7 isoform X1 K18460 XPO7; exportin-7
E 105025787 ran GTPase-activating protein 1 isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 105025082 ran GTPase-activating protein 1 isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 105007409 eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 105010873 eukaryotic translation initiation factor 4E-1B isoform X1 K03259 EIF4E; translation initiation factor 4E
E 105010612 eukaryotic translation initiation factor 4E-like isoform X1 K03259 EIF4E; translation initiation factor 4E
E 105020966 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X2 K03259 EIF4E; translation initiation factor 4E
E 105027498 eukaryotic translation initiation factor 4E-1A isoform X1 K03259 EIF4E; translation initiation factor 4E
E 105023310 eukaryotic translation initiation factor 4E-1A isoform X1 K03259 EIF4E; translation initiation factor 4E
E 105007919 eukaryotic initiation factor 4A-I isoform X1 K03257 EIF4A; translation initiation factor 4A
E 105027213 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 105028914 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 105016596 eukaryotic translation initiation factor 4 gamma 1 isoform X2 K03260 EIF4G; translation initiation factor 4G
E 105018452 eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 105017291 eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 105026406 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 105016980 eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 105024774 eif4b; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 105023878 eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 105026797 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 105027007 eukaryotic translation initiation factor 4E-binding protein 2-like K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 105021430 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 105011307 eif4ebp3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 105026269 eukaryotic translation initiation factor 4E-binding protein 3-like K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 105016895 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 105017745 angel2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 105015700 angel1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel
E 105011693 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105020589 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105027457 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105007076 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 105027386 cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 105011141 gemin5; gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 105015576 transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 105011255 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105011806 cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105005729 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105024435 cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105013741 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105018695 cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105019846 putative ATP-dependent RNA helicase an3 isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 105021937 ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 105007977 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 105029899 gigyf1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 105024601 GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 105008385 embryonic polyadenylate-binding protein isoform X2 K13126 PABPC; polyadenylate-binding protein
E 105016474 polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 114839351 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 105006547 polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 105015806 pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 105030478 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 105014413 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 105030672 paip2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 105020531 polyadenylate-binding protein-interacting protein 2B isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 105007036 polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 105027855 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 105018626 deaf1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 105025602 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 105014794 denr; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 105006211 a1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 105022318 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 105013623 heterogeneous nuclear ribonucleoprotein A1 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105016231 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105016983 heterogeneous nuclear ribonucleoprotein A3 homolog 2-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105017060 RNA-binding protein Musashi homolog 1 isoform X2 K14411 MSI; RNA-binding protein Musashi
E 105014213 msi1; RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 105029302 dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 105013285 RNA-binding protein Musashi homolog 2 isoform X2 K14411 MSI; RNA-binding protein Musashi
E 105028669 RNA-binding protein Musashi homolog 2 isoform X2 K14411 MSI; RNA-binding protein Musashi
E 105018001 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 105024388 pelo; protein pelota homolog K06965 PELO; protein pelota
E 105017077 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 105019495 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 105013668 ATP-dependent RNA helicase DDX19B isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 105030692 ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 105023373 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 105013600 SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 105016956 sarnp; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 105008698 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 105011489 la-related protein 6 isoform X1 K18733 LARP6; la-related protein 6
E 105015381 larp6; la-related protein 6 K18733 LARP6; la-related protein 6
E 105021751 la-related protein 6-like isoform X1 K18733 LARP6; la-related protein 6
E 105010902 pura; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 105026742 transcriptional activator protein Pur-alpha-like K21772 PURA; transcriptional activator protein Pur-alpha
E 105007231 transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 105007340 purb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 105025756 poldip3; polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 105016926 zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 105019006 leng8; leukocyte receptor cluster member 8 isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
E 105024389 patl2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 105026176 eukaryotic peptide chain release factor subunit 1 isoform X2 K03265 ETF1; peptide chain release factor subunit 1
E 105029257 eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 105013069 eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 105025103 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 105024419 regulator of nonsense transcripts 1 isoform X3 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 105026208 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 105020176 upf2; regulator of nonsense transcripts 2 isoform X3 K14327 UPF2; regulator of nonsense transcripts 2
E 105031343 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 105025497 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 105025380 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 105021738 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 105026079 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 105026695 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 105011486 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 105011263 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 105009682 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 105010580 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 105024168 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 105025215 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 105024420 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 105020827 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 105015482 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 105028558 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 105019852 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 105006352 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 105015335 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 105030679 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 105015552 ppp2r5e; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 105025507 ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 105015991 ppp2r5c; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X5 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 105030485 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 105019277 smg5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 105031156 smg6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 105018103 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 105023980 smg8; protein SMG8 K18734 SMG8; protein SMG8
E 105019102 smg9; protein SMG9 K18735 SMG9; protein SMG9
E 105007977 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 105029899 gigyf1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 105024601 GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 105014682 secisbp2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 105022662 secisbp2l; selenocysteine insertion sequence-binding protein 2-like isoform X3 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 105029602 dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 105024155 GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 106024443 GTP-binding protein 1-like isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 105014748 pum3; pumilio homolog 3 isoform X1 K14844 PUF6; pumilio homology domain family member 6
E 105011552 unconventional myosin-Vb K10357 MYO5; myosin V
E 105018346 unconventional myosin-Va K10357 MYO5; myosin V
E 105022645 myo5a; unconventional myosin-Va isoform X16 K10357 MYO5; myosin V
E 105014710 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 105018175 myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 105005734 protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 105022381 protein bicaudal D homolog 2-like isoform X1 K18739 BICD; protein bicaudal D
E 105024963 protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 105018168 bicd1; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 105020135 protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 105015689 exd1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 105012846 actin, non-muscle 6.2 K05692 ACTB_G1; actin beta/gamma 1
E 105029642 actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 105031069 actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 105008174 myelin basic protein isoform X4 K17269 MBP; myelin basic protein
E 105019330 mbp; myelin basic protein K17269 MBP; myelin basic protein
E 105019331 myelin basic protein-like isoform X1 K17269 MBP; myelin basic protein
E 105023534 vimentin-like K07606 VIM; vimentin
E 105010334 vimentin A2 K07606 VIM; vimentin
E 105027106 vim; vimentin K07606 VIM; vimentin
E 105018493 metallothionein K14739 MT1_2; metallothionein 1/2
E 105019386 transcriptional regulator Myc K04377 MYC; Myc proto-oncogene protein
E 105029935 transcriptional regulator Myc-2 K04377 MYC; Myc proto-oncogene protein
E 105023685 myc; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 105015087 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 105014021 T-box-containing protein TBX6L K10180 TBX6; T-box protein 6
E 105030988 T-box transcription factor TBX6L-like K10180 TBX6; T-box protein 6
E 105024391 T-box transcription factor TBX6-like K10180 TBX6; T-box protein 6
E 105028277 nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 105012055 far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 105013140 far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 105031228 fubp1; far upstream element-binding protein 1 isoform X3 K13210 FUBP; far upstream element-binding protein
E 105015013 far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 105030200 far upstream element-binding protein 3 K13210 FUBP; far upstream element-binding protein
E 105019383 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 105027913 elongation factor 1-alpha, oocyte form K03231 EEF1A; elongation factor 1-alpha
E 105023253 eef1a1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 105027911 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 105029151 eef1g; elongation factor 1-gamma isoform X2 K03233 EEF1G; elongation factor 1-gamma
E 105008613 hax1; HCLS1-associated protein X-1 isoform X1 K16220 HAX1; HCLS1-associated protein X-1
E 105024976 arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 105020632 arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 105026898 agfg1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 105019652 stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 105026468 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 105023637 igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 105011410 polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 105019814 polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 105011255 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105011806 cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105005729 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105024435 cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105013741 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105018695 cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 105011693 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105020589 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105027457 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105007076 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 105027386 cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 105026324 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 105030566 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 105030110 poly(rC)-binding protein 4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 105007398 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 105019790 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 105008026 poly(rC)-binding protein 4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 105026556 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 105022260 caprin-1 K18743 CAPRIN1; caprin-1
E 105018320 caprin1; caprin-1 isoform X1 K18743 CAPRIN1; caprin-1
E 105020152 caprin2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 105013847 ybx1; nuclease-sensitive element-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 105018288 xrn1; 5'-3' exoribonuclease 1 isoform X3 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 105030266 ago2; protein argonaute-2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 105028370 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 105027900 protein argonaute-4 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 105007758 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 105028369 protein argonaute-1 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 105007409 eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 105010873 eukaryotic translation initiation factor 4E-1B isoform X1 K03259 EIF4E; translation initiation factor 4E
E 105010612 eukaryotic translation initiation factor 4E-like isoform X1 K03259 EIF4E; translation initiation factor 4E
E 105020966 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X2 K03259 EIF4E; translation initiation factor 4E
E 105027498 eukaryotic translation initiation factor 4E-1A isoform X1 K03259 EIF4E; translation initiation factor 4E
E 105023310 eukaryotic translation initiation factor 4E-1A isoform X1 K03259 EIF4E; translation initiation factor 4E
E 105024419 regulator of nonsense transcripts 1 isoform X3 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 105026208 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 105019846 putative ATP-dependent RNA helicase an3 isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 105021937 ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 105024285 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 105028510 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 105028270 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 105020535 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 105014577 mex3c; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 105014616 mex3b; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 105031462 mex3a; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 105025013 fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 105025741 lsm14b; protein LSM14 homolog B K18749 LSM14; protein LSM14
E 105018105 protein LSM14 homolog A-like isoform X1 K18749 LSM14; protein LSM14
E 105017337 protein LSM14 homolog B K18749 LSM14; protein LSM14
E 105025711 lsm14a; protein LSM14 homolog A isoform X1 K18749 LSM14; protein LSM14
E 105026324 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 105030566 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 105013847 ybx1; nuclease-sensitive element-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 105025707 wtip; Wilms tumor protein 1-interacting protein K16682 AJUBA; LIM domain-containing protein
E 105020564 ajuba; LIM domain-containing protein ajuba isoform X2 K16682 AJUBA; LIM domain-containing protein
E 105019185 limd1; LIM domain-containing protein 1 isoform X1 K16682 AJUBA; LIM domain-containing protein
E 105007953 mov10; helicase MOV-10 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 105019289 proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 105027267 tnpo1; transportin-1 isoform X1 K18752 TNPO1; transportin-1
E 105030485 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 105019277 smg5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 105031156 smg6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 105018103 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 105017570 zfp36l1; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 105029926 zfp36l2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 105023076 mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 105023081 mRNA decay activator protein ZFP36L1 isoform X1 K18753 ZFP36L; butyrate response factor
E 105026854 mRNA decay activator protein ZFP36L1 isoform X1 K18753 ZFP36L; butyrate response factor
E 105012614 protein lin-28 homolog A isoform X3 K18754 LIN28; protein lin-28
E 105027178 protein lin-28 homolog A isoform X2 K18754 LIN28; protein lin-28
E 105021683 lin28b; protein lin-28 homolog B isoform X2 K18754 LIN28; protein lin-28
E 105020824 htt; huntingtin isoform X1 K04533 HD; huntingtin
E 105020153 ipo8; importin-8 isoform X1 K18755 IPO8; importin-8
E 105010548 protein bicaudal C homolog 1-B isoform X1 K18756 BICC1; protein bicaudal C
E 105026175 protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 105026296 bicc1; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 105013623 heterogeneous nuclear ribonucleoprotein A1 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105016231 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105016983 heterogeneous nuclear ribonucleoprotein A3 homolog 2-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 105013090 cAMP-dependent protein kinase catalytic subunit alpha isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 105008738 cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 105029732 prkaca; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 105019307 cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 105015877 la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 105011192 larp1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 105012813 atxn2l; ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 105014636 atxn2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 105024378 ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 105021715 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 105026344 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 105023096 mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 105015299 U6 snRNA-associated Sm-like protein LSm1 isoform X1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 105014097 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 105029546 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 105006270 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 105026207 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 105030051 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 105020935 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 105022661 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 105024879 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 105012703 kinesin light chain 1 isoform X2 K10407 KLC; kinesin light chain
E 105012311 kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 105010677 kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 105015543 klc1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 105030124 klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 105011552 unconventional myosin-Vb K10357 MYO5; myosin V
E 105018346 unconventional myosin-Va K10357 MYO5; myosin V
E 105022645 myo5a; unconventional myosin-Va isoform X16 K10357 MYO5; myosin V
E 105014710 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 105018175 myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 105030354 tubulin alpha chain K07374 TUBA; tubulin alpha
E 105008555 tubulin alpha-8 chain isoform X1 K07374 TUBA; tubulin alpha
E 105030353 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 105030356 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 105013598 tubulin alpha chain K07374 TUBA; tubulin alpha
E 105013645 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 114828684 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 106024585 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 105023176 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 105030355 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 105016959 tubulin alpha-1C chain isoform X3 K07374 TUBA; tubulin alpha
E 105022333 tubulin alpha-8 chain isoform X1 K07374 TUBA; tubulin alpha
E 105015227 tubulin alpha chain, testis-specific K07374 TUBA; tubulin alpha
E 105019718 tubulin alpha chain K07374 TUBA; tubulin alpha
E 105023779 tubulin alpha chain K07374 TUBA; tubulin alpha
E 106024858 tubulin alpha-1A chain-like isoform X2 K07374 TUBA; tubulin alpha
E 105023174 tubulin alpha chain isoform X1 K07374 TUBA; tubulin alpha
E 105011255 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105011806 cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105005729 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105024435 cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105013741 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105018695 cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 105011141 gemin5; gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 105015576 transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 105025107 trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 105013132 tnrc6c; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 105029030 trinucleotide repeat-containing gene 6C protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 105030722 tnrc6a; trinucleotide repeat-containing gene 6A protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 105025798 trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 105018219 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 105018606 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 105023108 cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 105019079 cnot3; CCR4-NOT transcription complex subunit 3 isoform X6 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 105025878 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 105021833 cnot4; CCR4-NOT transcription complex subunit 4 isoform X2 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 105005612 LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 105030220 cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 105024905 CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 105025822 CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 105011142 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 105026542 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 105025709 uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 105028788 dis3l2; DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 105022316 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 105022056 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 105011006 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 105013499 uncharacterized protein LOC105013499 K14443 TOB; protein Tob/BTG
E 105005631 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 105020389 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 105019099 maternal B9.15 protein K14443 TOB; protein Tob/BTG
E 105025785 tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 105024149 protein Tob1 K14443 TOB; protein Tob/BTG
E 105025055 protein Tob1 K14443 TOB; protein Tob/BTG
E 105016815 protein BTG2 K14443 TOB; protein Tob/BTG
E 105016895 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 105029332 patl1; protein PAT1 homolog 1 isoform X3 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 105015307 enhancer of mRNA-decapping protein 3 isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 105018315 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 105018454 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 105012059 nanos homolog 2-like K18761 NANOS3; protein nanos 3
E 106024435 LOW QUALITY PROTEIN: nanos homolog 3-like K18761 NANOS3; protein nanos 3
E 105012064 nanos homolog 2 K18761 NANOS3; protein nanos 3
E 105020176 upf2; regulator of nonsense transcripts 2 isoform X3 K14327 UPF2; regulator of nonsense transcripts 2
E 105031343 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 105025497 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 105012419 E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 105029150 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 105008364 interferon-induced, double-stranded RNA-activated protein kinase-like isoform X1 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 105011817 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 105006934 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 105013949 YTH domain-containing family protein 1 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 105016020 ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 105022349 YTH domain-containing family protein 1 isoform X2 K20102 YTHDF; YTH domain-containing family protein
E 105019596 ythdf3; YTH domain-containing family protein 3 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 105029393 nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 105015180 nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 105028640 tial1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 105008385 embryonic polyadenylate-binding protein isoform X2 K13126 PABPC; polyadenylate-binding protein
E 105016474 polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 114839351 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 105006547 polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 105015806 pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 105030478 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 105019652 stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 105026468 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 105011693 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105020589 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105027457 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 105011411 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 105009716 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 105030027 g3bp1; ras GTPase-activating protein-binding protein 1 isoform X2 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 105020969 g3bp2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 105029767 eif2a; eukaryotic translation initiation factor 2A isoform X1 K15026 EIF2A; translation initiation factor 2A
E 105006303 eif3b; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 105007919 eukaryotic initiation factor 4A-I isoform X1 K03257 EIF4A; translation initiation factor 4A
E 105027213 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 105028914 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 105008739 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 105024774 eif4b; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 105023878 eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 105016596 eukaryotic translation initiation factor 4 gamma 1 isoform X2 K03260 EIF4G; translation initiation factor 4G
E 105018452 eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 105017291 eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 105026406 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 105016980 eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 105006544 rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 105030211 rps6ka6; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 105027683 ribosomal protein S6 kinase alpha-3 isoform X2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 105021344 ribosomal protein S6 kinase alpha-2 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 105021995 ribosomal protein S6 kinase alpha-3 isoform X2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 105030329 rack1; receptor of activated protein C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 105015142 TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 105014393 TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 105015035 TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 105010949 nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 105026736 nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 105028329 hdac6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 105019978 tdrd3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 105017883 larp4b; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
E 105022009 uncharacterized protein LOC105022009 isoform X1 K18763 LARP4; la-related protein 4
E 105017018 la-related protein 4 isoform X2 K18763 LARP4; la-related protein 4
E 105023891 la-related protein 4-like isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 105026344 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 105023096 mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 105021715 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 105024285 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 105028510 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 105028270 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 105015307 enhancer of mRNA-decapping protein 3 isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 105018315 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 105018454 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 105029332 patl1; protein PAT1 homolog 1 isoform X3 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 105015299 U6 snRNA-associated Sm-like protein LSm1 isoform X1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 105014097 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 105029546 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 105006270 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 105026207 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 105030051 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 105020935 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 105022661 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 105024879 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 105018288 xrn1; 5'-3' exoribonuclease 1 isoform X3 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 105017831 xrn2; 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 105018732 U8 snoRNA-decapping enzyme isoform X1 K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 105028750 dcps; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 105021573 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 105006847 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 105015015 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 105007534 exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 105019298 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 105029595 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 105018505 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 105028017 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 105029974 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 105020844 exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 105020049 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 105026503 dis3l; DIS3-like exonuclease 1 isoform X2 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 105022978 exosc10; exosome component 10 isoform X1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 105008616 c1d; nuclear nucleic acid-binding protein C1D isoform X2 K12592 C1D; exosome complex protein LRP1
E 105018102 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 105018100 terminal nucleotidyltransferase 4A-like K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 105012515 tent4a; terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 105025701 tent4b; terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 105007033 zcchc7; zinc finger CCHC domain-containing protein 7 isoform X1 K12597 AIR1_2; protein AIR1/2
E 105028528 zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 105026680 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 105027855 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 105027574 ttc37; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 105018686 wdr61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 105030220 cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 105024905 CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 105025822 CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 105018219 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 105018606 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 105023108 cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 105019079 cnot3; CCR4-NOT transcription complex subunit 3 isoform X6 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 105025878 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 105021833 cnot4; CCR4-NOT transcription complex subunit 4 isoform X2 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 105005612 LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 105011142 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 105026542 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 105022524 CCR4-NOT transcription complex subunit 9 isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 105016174 cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 105018884 cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 105022316 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 105022056 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 105029847 parn; poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 105009664 dhx36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 105011006 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 105013499 uncharacterized protein LOC105013499 K14443 TOB; protein Tob/BTG
E 105005631 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 105020389 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 105019099 maternal B9.15 protein K14443 TOB; protein Tob/BTG
E 105025785 tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 105024149 protein Tob1 K14443 TOB; protein Tob/BTG
E 105025055 protein Tob1 K14443 TOB; protein Tob/BTG
E 105016815 protein BTG2 K14443 TOB; protein Tob/BTG
E 105029048 nocturnin isoform X2 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 105020852 nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 105014715 eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 105030259 eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 105028750 dcps; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 105013236 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 105018687 ireb2; iron-responsive element-binding protein 2 isoform X1 K22416 IREB2; iron-responsive element-binding protein 2
E 105021573 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 105009913 helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 105016731 helz2; helicase with zinc finger domain 2 isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 105015472 nrde2; protein NRDE2 homolog K26109 NRDE2; nuclear exosome regulator NRDE2
E 105023275 samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 105023195 samd4b; protein Smaug homolog 2 isoform X1 K27396 SMG; protein Smaug
E 105029504 focad; focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 105012585 zc3h12a; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 105006455 zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 105016467 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 105027161 ribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 105017898 zc3h12d; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 105019887 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 105031121 drosha; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 105011013 rexo2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 105006402 beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 105025849 gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 105030450 eno1; enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 105016883 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 105029963 gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 105010519 pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 105019441 ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 105017837 pfkp; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 105023842 ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 105017153 ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 105029874 pfkl; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 105027269 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 105016278 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 105015015 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 105006847 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 105019298 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 105028017 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024