+E Ribosome biogenesis KO
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Ribosome Biogenesis - Escherichia coli W
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D ECW_m2796 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D ECW_m4524 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C ECW_m2794 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
C ECW_m3455 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C ECW_m0142 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C ECW_m3441 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
C ECW_m0485 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
C ECW_m4339 nusG; transcription termination factor K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D ECW_m2385 rsuA; 16S rRNA pseudouridylate 516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D ECW_m0051 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D ECW_m3556 rsmB; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D ECW_m4732 rsmC; 16S rRNA m(2)G1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D ECW_m3726 rsmD; predicted methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D ECW_m3204 rsmE; 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D ECW_m2006 rsmF; predicted methyltransferase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D ECW_m4043 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D ECW_m0081 mraW; S-adenosyl-dependent methyltransferase activity on membrane-located substrates K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D ECW_m3416 yraL; predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D ECW_m3756 yhiQ; predicted SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D ECW_m1993 rrmA; 23S rRNA m1G745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D ECW_m4542 rlmB; 23S rRNA (Gm2251)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D ECW_m3451 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D ECW_m0863 rlmF; predicted SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D ECW_m3350 rlmG; predicted methyltransferase small domain K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D ECW_m0690 ybeA; conserved protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D ECW_m1077 yccW; predicted methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D ECW_m3758 yhiR; predicted DNA (exogenous) processing protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D ECW_m1058 rlmL; predicted methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D ECW_m3016 ygdE; predicted methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D ECW_m2742 rlmN; radical SAM protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D ECW_m2994 rumA; 23S rRNA (uracil-5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D ECW_m0967 rumB; 23S rRNA m(5)U747 methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D ECW_m0056 rluA; pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D ECW_m1360 rluB; 23S rRNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D ECW_m1193 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D ECW_m2823 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D ECW_m1243 rluE; 23S rRNA pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D ECW_m4381 rluF; 23S rRNA pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D ECW_m2810 yfiF; predicted methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C ECW_m4734 rimI; acetylase for 30S ribosomal subunit protein S18 K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C ECW_m1173 rimJ; ribosomal-protein-S5-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C ECW_m0960 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C ECW_m1555 rimL; ribosomal-protein-L7/L12-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C ECW_m2836 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C ECW_m0893 yliG; predicted SAM-dependent methyltransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C ECW_m1015 ycaO; conserved hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C ECW_m3525 prmA; methylase for 50S ribosomal subunit protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C ECW_m2519 prmB; N5-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C ECW_m1236 ycfD; conserved protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C ECW_m2796 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C ECW_m1191 rne; fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C ECW_m3513 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C ECW_m3207 yqgF; predicted Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C ECW_m1442 dbpA; ATP-dependent RNA helicase, specific for 23S rRNA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C ECW_m3432 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C ECW_m2805 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C ECW_m2794 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
C ECW_m4523 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C ECW_m2735 der; predicted GTP-binding protein K03977 engA; GTPase
C ECW_m3455 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-]
C ECW_m4535 hflX; predicted GTPase K03665 hflX; GTPase
B Other maturation factors
C ECW_m3550 rimN; predicted ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C ECW_m3926 spoT; bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C ECW_m3439 rbfA; 30S ribosome binding factor K02834 rbfA; ribosome-binding factor A
C ECW_m3442 yhbC; conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C ECW_m0599 ybcJ; predicted RNA-binding protein K14761 rlbA; ribosome-associated protein
C ECW_m0691 ybeB; predicted protein K09710 ybeB; ribosome-associated protein
C ECW_m0714 ybeY; conserved protein K07042 ybeY; probable rRNA maturation factor
C ECW_m3452 yhbY; predicted RNA-binding protein K07574 yhbY; RNA-binding protein
C ECW_m3879 yibL; conserved hypothetical protein K14762 yibL; ribosome-associated protein
C ECW_m4595 yjgA; conserved hypothetical protein K09889 yjgA; ribosome-associated protein
C ECW_m1063 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor
C ECW_m3475 hpf; predicted ribosome-associated, sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C ECW_m2825 raiA; cold shock protein associated with 30S ribosomal subunit K05809 raiA; ribosome-associated inhibitor A
C ECW_m1608 sra; 30S ribosomal subunit protein S22 K02972 sra; stationary-phase-induced ribosome-associated protein
C ECW_m1289 ychF; predicted GTP-binding protein K06942 ychF; ribosome-binding ATPase
C ECW_m1196 yceD; conserved protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024