+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Escherichia coli NA114 (UPEC)

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D ECNA114_2640 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D ECNA114_4381 orn; 3'-to-5' oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C ECNA114_2639 era; GTP-binding protein K03595 era; GTPase C ECNA114_3262 obgE; GTP-binding protein ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C ECNA114_0134 dksA; RNA polymerase-binding protein K06204 dksA; RNA polymerase-binding transcription factor C ECNA114_3250 nusA; Transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA C ECNA114_0393 nusB; Transcription antitermination protein K03625 nusB; transcription antitermination protein NusB C ECNA114_3439 nusG; Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D ECNA114_2277 rsuA; 16s rRNA pseudouridylate synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D ECNA114_0041 ksqA; Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D ECNA114_3363 rsmB; 16S ribosomal RNA methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D ECNA114_4611 rsmC; 16S rRNA methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D ECNA114_3574 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D ECNA114_2994 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D ECNA114_1881 yebU; rRNA cytosine-C5-methyltransferase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178] D ECNA114_3889 gidB; rRNA small subunit methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D ECNA114_0075 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D ECNA114_3226 Hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D ECNA114_3607 yhiQ; Putative methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D ECNA114_1867 rrmA; 23S rRNA methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D ECNA114_4396 yjfH; 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D ECNA114_3258 rrmJ; 23S ribosomal RNA methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D ECNA114_0740 ybiN; putative SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D ECNA114_3177 23S rRNA guanine-N-2-methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D ECNA114_0576 ybeA; rRNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D ECNA114_1047 Hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D ECNA114_3609 yhiR; Hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D ECNA114_1027 rlmL; 23S rRNA -methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D ECNA114_2846 ygdE; hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D ECNA114_2595 yfgB; Ribosomal RNA large subunit methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D ECNA114_2820 ygcA; 23S rRNA Uracil-5-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D ECNA114_0801 rumB; 23S rRNA (Uracil-5-) -methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D ECNA114_0046 yabO; 23S rRNA/tRNA pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D ECNA114_1456 yciL; 23S rRNA pseudouridylate synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D ECNA114_1142 rluC; 23S rRNA pseudouridylate synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D ECNA114_2664 sfhB; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D ECNA114_1193 rluE; 23S rRNA pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D ECNA114_4178 rluF; 23S rRNA pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D ECNA114_2654 yfiF; putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] B ribosomal protein modification factors C ECNA114_4613 rimI; Ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C ECNA114_1124 rimJ; Ribosomal-protein-S5p-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C ECNA114_0794 rimk; Ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C ECNA114_1565 rimL; Ribosomal-protein-L7p-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] C ECNA114_2676 yfjA; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM C ECNA114_0777 rimO; Ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C ECNA114_0937 ycaO; Hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C ECNA114_3340 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C ECNA114_2421 yfcB; putative adenine specific methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C ECNA114_1186 ycfD; Hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C ECNA114_2640 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C ECNA114_1141 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C ECNA114_3318 Cytoplasmic axial filament protein CafA K08301 rng; ribonuclease G [EC:3.1.26.-] C ECNA114_2997 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C ECNA114_1534 dbpA; ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C ECNA114_3243 deaD; ATP-dependentRNA helicase A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C ECNA114_2649 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] B GTPases C ECNA114_2639 era; GTP-binding protein K03595 era; GTPase C ECNA114_4380 yjeQ; Ribosome small subunit-stimulated GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C ECNA114_2589 putative GTP-binding protein K03977 engA; GTPase C ECNA114_3262 obgE; GTP-binding protein ObgE K03979 obgE; GTPase [EC:3.6.5.-] C ECNA114_4389 hflX; Putative GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C ECNA114_3357 yrdC; Ptative ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C ECNA114_3794 spoT; Bifunctinal GTP pyrophosphokinase,ppGpp synthetase II/Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C ECNA114_3248 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C ECNA114_3251 yhbC; Hypothetical protein K09748 rimP; ribosome maturation factor RimP C ECNA114_1436 Hypothetical protein K14761 rlbA; ribosome-associated protein C ECNA114_0577 ybeB; Hypothetical protein K09710 ybeB; ribosome-associated protein C ECNA114_0598 ybeY; putative metalloprotease K07042 ybeY; probable rRNA maturation factor C ECNA114_3259 yhbY; RNA binding protein K07574 yhbY; RNA-binding protein C ECNA114_3753 yibL; Hypothetical protein K14762 yibL; ribosome-associated protein C ECNA114_4456 yjgA; Hypothetical protein K09889 yjgA; ribosome-associated protein C ECNA114_3282 yhbH; Putative sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor C ECNA114_2666 yfiA; YfiA protein K05809 raiA; ribosome-associated inhibitor A C ECNA114_3655 rpsV; 30S ribosomal subunit S22 K02972 sra; stationary-phase-induced ribosome-associated protein C ECNA114_1368 ychF; GTP-dependent nucleic acid-binding protein K06942 ychF; ribosome-binding ATPase C ECNA114_1145 yceD; Hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 22, 2025