+C RNA KO #

  Non-coding RNAs - Escherichia coli O26:H11 11368 (EHEC)

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ATransfer RNA B ECO26_tRNA051 alaX; tRNA-Ala K14218 tRNA-Ala; tRNA Ala B ECO26_tRNA052 alaW; tRNA-Ala K14218 tRNA-Ala; tRNA Ala B ECO26_tRNA002 alaV; tRNA-Ala K14218 tRNA-Ala; tRNA Ala B ECO26_tRNA077 alaT; tRNA-Ala K14218 tRNA-Ala; tRNA Ala B ECO26_tRNA075 alaU; tRNA-Ala K14218 tRNA-Ala; tRNA Ala B ECO26_tRNA006 argU; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA037 argN3; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA024 argO1; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA058 argO6; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA036 argO5; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA035 argO4; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA027 argO2; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA030 argO3; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA082 argX; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA023 argN1; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA050 argW; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA061 argQ; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA064 argV; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA063 argY; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA062 argZ; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA026 argN2; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA059 argN4; tRNA-Arg K14219 tRNA-Arg; tRNA Arg B ECO26_tRNA045 asnT; tRNA-Asn K14220 tRNA-Asn; tRNA Asn B ECO26_tRNA046 asnW; tRNA-Asn K14220 tRNA-Asn; tRNA Asn B ECO26_tRNA048 asnV; tRNA-Asn K14220 tRNA-Asn; tRNA Asn B ECO26_tRNA047 asnU; tRNA-Asn K14220 tRNA-Asn; tRNA Asn B ECO26_tRNA003 aspU; tRNA-Asp K14221 tRNA-Asp; tRNA Asp B ECO26_tRNA004 aspV; tRNA-Asp K14221 tRNA-Asp; tRNA Asp B ECO26_tRNA084 aspT; tRNA-Asp K14221 tRNA-Asp; tRNA Asp B ECO26_tRNA042 cysT; tRNA-Cys K14222 tRNA-Cys; tRNA Cys B ECO26_tRNA007 glnX; tRNA-Gln K14223 tRNA-Gln; tRNA Gln B ECO26_tRNA008 glnV; tRNA-Gln K14223 tRNA-Gln; tRNA Gln B ECO26_tRNA010 glnW; tRNA-Gln K14223 tRNA-Gln; tRNA Gln B ECO26_tRNA011 glnU; tRNA-Gln K14223 tRNA-Gln; tRNA Gln B ECO26_tRNA057 gltW; tRNA-Glu K14224 tRNA-Glu; tRNA Glu B ECO26_tRNA085 gltU; tRNA-Glu K14224 tRNA-Glu; tRNA Glu B ECO26_tRNA088 gltT; tRNA-Glu K14224 tRNA-Glu; tRNA Glu B ECO26_tRNA093 gltV; tRNA-Glu K14224 tRNA-Glu; tRNA Glu B ECO26_tRNA091 glyT; tRNA-Gly K14225 tRNA-Gly; tRNA Gly B ECO26_tRNA097 glyY; tRNA-Gly K14225 tRNA-Gly; tRNA Gly B ECO26_tRNA043 glyW; tRNA-Gly K14225 tRNA-Gly; tRNA Gly B ECO26_tRNA096 glyX; tRNA-Gly K14225 tRNA-Gly; tRNA Gly B ECO26_tRNA069 glyU; tRNA-Gly K14225 tRNA-Gly; tRNA Gly B ECO26_tRNA095 glyV; tRNA-Gly K14225 tRNA-Gly; tRNA Gly B ECO26_tRNA081 hisR; tRNA-His K14226 tRNA-His; tRNA His B ECO26_tRNA001 ileV; tRNA-Ile K14227 tRNA-Ile; tRNA Ile B ECO26_tRNA078 ileT; tRNA-Ile K14227 tRNA-Ile; tRNA Ile B ECO26_tRNA076 ileU; tRNA-Ile K14227 tRNA-Ile; tRNA Ile B ECO26_tRNA098 leuX; tRNA-Leu K14228 tRNA-Leu; tRNA Leu B ECO26_tRNA073 leuU; tRNA-Leu K14228 tRNA-Leu; tRNA Leu B ECO26_tRNA012 leuW; tRNA-Leu K14228 tRNA-Leu; tRNA Leu B ECO26_tRNA080 leuT; tRNA-Leu K14228 tRNA-Leu; tRNA Leu B ECO26_tRNA101 leuQ; tRNA-Leu K14228 tRNA-Leu; tRNA Leu B ECO26_tRNA099 leuV; tRNA-Leu K14228 tRNA-Leu; tRNA Leu B ECO26_tRNA100 leuP; tRNA-Leu K14228 tRNA-Leu; tRNA Leu B ECO26_tRNA041 leuZ; tRNA-Leu K14228 tRNA-Leu; tRNA Leu B ECO26_tRNA014 lysT; tRNA-Lys K14229 tRNA-Lys; tRNA Lys B ECO26_tRNA019 lysZ; tRNA-Lys K14229 tRNA-Lys; tRNA Lys B ECO26_tRNA016 lysW; tRNA-Lys K14229 tRNA-Lys; tRNA Lys B ECO26_tRNA018 lysY; tRNA-Lys K14229 tRNA-Lys; tRNA Lys B ECO26_tRNA056 lysV; tRNA-Lys K14229 tRNA-Lys; tRNA Lys B ECO26_tRNA020 lysQ; tRNA-Lys K14229 tRNA-Lys; tRNA Lys B ECO26_tRNA022 ileZ1; tRNA-Ile K14230 tRNA-Met; tRNA Met B ECO26_tRNA025 ileZ2; tRNA-Ile K14230 tRNA-Met; tRNA Met B ECO26_tRNA034 ileZ4; tRNA-Ile K14230 tRNA-Met; tRNA Met B ECO26_tRNA060 ileZ6; tRNA-Ile K14230 tRNA-Met; tRNA Met B ECO26_tRNA038 ileZ5; tRNA-Ile K14230 tRNA-Met; tRNA Met B ECO26_tRNA029 ileZ3; tRNA-Ile K14230 tRNA-Met; tRNA Met B ECO26_tRNA009 metU; tRNA-Met K14230 tRNA-Met; tRNA Met B ECO26_tRNA013 metL; tRNA-Met K14230 tRNA-Met; tRNA Met B ECO26_tRNA071 ileX; tRNA-Ile K14230 tRNA-Met; tRNA Met B ECO26_tRNA066 metZ; tRNA-Met K14230 tRNA-Met; tRNA Met B ECO26_tRNA067 metW; tRNA-Met K14230 tRNA-Met; tRNA Met B ECO26_tRNA068 metV; tRNA-Met K14230 tRNA-Met; tRNA Met B ECO26_tRNA072 metY; tRNA-Met K14230 tRNA-Met; tRNA Met B ECO26_tRNA070 pheV; tRNA-Phe K14231 tRNA-Phe; tRNA Phe B ECO26_tRNA094 pheU; tRNA-Phe K14231 tRNA-Phe; tRNA Phe B ECO26_tRNA087 proK; tRNA-Pro K14232 tRNA-Pro; tRNA Pro B ECO26_tRNA049 proL; tRNA-Pro K14232 tRNA-Pro; tRNA Pro B ECO26_tRNA079 proM; tRNA-Pro K14232 tRNA-Pro; tRNA Pro B ECO26_tRNA065 serV; tRNA-Ser K14233 tRNA-Ser; tRNA Ser B ECO26_tRNA044 serU; tRNA-Ser K14233 tRNA-Ser; tRNA Ser B ECO26_tRNA031 serT; tRNA-Ser K14233 tRNA-Ser; tRNA Ser B ECO26_tRNA021 serW; tRNA-Ser K14233 tRNA-Ser; tRNA Ser B ECO26_tRNA028 serX; tRNA-Ser K14233 tRNA-Ser; tRNA Ser B ECO26_tRNA092 thrT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr B ECO26_tRNA074 thrV; tRNA-Thr K14234 tRNA-Thr; tRNA Thr B ECO26_tRNA005 thrW; tRNA-Thr K14234 tRNA-Thr; tRNA Thr B ECO26_tRNA089 thrU; tRNA-Thr K14234 tRNA-Thr; tRNA Thr B ECO26_tRNA083 trpT; tRNA-Trp K14235 tRNA-Trp; tRNA Trp B ECO26_tRNA032 tyrV; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr B ECO26_tRNA033 tyrT; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr B ECO26_tRNA090 tyrU; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr B ECO26_tRNA017 valZ; tRNA-Val K14237 tRNA-Val; tRNA Val B ECO26_tRNA055 valY; tRNA-Val K14237 tRNA-Val; tRNA Val B ECO26_tRNA054 valX; tRNA-Val K14237 tRNA-Val; tRNA Val B ECO26_tRNA053 valU; tRNA-Val K14237 tRNA-Val; tRNA Val B ECO26_tRNA015 valT; tRNA-Val K14237 tRNA-Val; tRNA Val B ECO26_tRNA039 valV; tRNA-Val K14237 tRNA-Val; tRNA Val B ECO26_tRNA040 valW; tRNA-Val K14237 tRNA-Val; tRNA Val B ECO26_tRNA086 serC; tRNA-Sec K14238 tRNA-Sec; tRNA Sec # ARibosomal RNA B Prokaryotic rRNA C ECO26_rRNA06 rrsG; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA C ECO26_rRNA10 rrsD; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA C ECO26_rRNA17 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA C ECO26_rRNA01 rrsH; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA C ECO26_rRNA20 rrsE; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA C ECO26_rRNA13 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA C ECO26_rRNA16 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA C ECO26_rRNA18 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C ECO26_rRNA12 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C ECO26_rRNA15 rrlC; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C ECO26_rRNA02 rrlH; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C ECO26_rRNA05 rrlG; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C ECO26_rRNA21 rrlE; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C ECO26_rRNA09 rrlD; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C ECO26_rRNA07 rrfF; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C ECO26_rRNA19 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C ECO26_rRNA08 rrfD; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C ECO26_rRNA04 rrfG; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C ECO26_rRNA22 rrfE; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C ECO26_rRNA11 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C ECO26_rRNA14 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C ECO26_rRNA03 rrfH; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA B Eukaryotic rRNA # ASmall non-coding RNA B Micro RNA B Small nuclear RNA B Small nucleolar RNA # ALong-non-coding RNA # AOther RNA B Signal recognition particle C ECO26_ncRNA03 ffs; 4.5S sRNA component of Signal Recognition Particle (SRP); works with the Ffh protein; involved in co-translational protein translocation into and possibly through membranes K01983 ffs; SRP RNA B Ribonuclease P C ECO26_ncRNA56 rnpB; RNase P, M1 sRNA component; involved in transfer RNA and 4.5S RNA-processing K01978 rnpB; M1 RNA B Antisense regulators C ECO26_ncRNA64 istR; sRNAs IstR-1 and IstR-2, tisB regulators K18526 istR; sRNA antisense regulator of TisB protein C ECO26_ncRNA33 quad; Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes K18864 sibA; sRNA antisense regulator of IbsA protein C ECO26_ncRNA34 quad; Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes K18865 sibB; sRNA antisense regulator of IbsB protein C ECO26_ncRNA35 quad; Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes K18865 sibB; sRNA antisense regulator of IbsB protein C ECO26_ncRNA50 quad; Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes K18867 sibC; sRNA antisense regulator of IbsC protein C ECO26_ncRNA53 quad; Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes K18868 sibD; sRNA antisense regulator of IbsD protein C ECO26_ncRNA54 quad; Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes K18869 sibE; sRNA antisense regulator of IbsE protein C ECO26_ncRNA42 ryfC; Novel sRNA, function unknown K18872 ohsC; sRNA antisense regulator of ShoB protein C ECO26_ncRNA70 ryjC; Novel sRNA, function unknown K18524 symR; sRNA antisense regulator of SymE protein B Unclassified C ssrA ssrA; ssrA K15035 ssrA; transfer-messenger RNA C ECO26_ncRNA31 dsrA; Regulatory sRNA enhances translation of RpoS; component of acid resistance regulatory circuit; also antagonist of H-NS function by decreasing H-NS levels K18502 dsrA; small regulatory RNA DsrA C ECO26_ncRNA04 sroB; Novel sRNA, function unknown K18503 chiX; small regulatory RNA ChiX C ECO26_ncRNA58 ryhA; Novel sRNA, function unknown K18504 arcZ; small regulatory RNA ArcZ C ECO26_ncRNA40 sroF; Novel sRNA, function unknown K15841 glmY; small regulatory RNA GlmY C ECO26_ncRNA63 ryiA; Novel sRNA, function unknown K18505 glmZ; small regulatory RNA GlmZ C ECO26_ncRNA01 sgrS; sRNA that destabilizes ptsG mRNA; regulated by SgrR K18506 sgrS; small regulatory RNA SgrS C ECO26_ncRNA07 rybB; sRNA effector of ompC and ompW mRNA instability; requires Hfq K18508 rybB; small regulatory RNA RybB C ECO26_ncRNA20 rydC; sRNA regulator of yejABEF K18509 rydC; small regulatory RNA RydC C ECO26_ncRNA44 micA; sRNA effector of ompA mRNA instability in stationary phase; requires Hfq K18511 micA; small regulatory RNA MicA C ECO26_ncRNA19 micC; MicC sRNA regulator of OmpC translation K18512 micC; small regulatory RNA MicC C ECO26_ncRNA37 micF; Regulatory antisense sRNA affecting ompF expression; member of soxRS regulon K18513 micF; small regulatory RNA MicF C ECO26_ncRNA45 csrB; CsrA-binding sRNA, antagonizing CsrA regulation; blocks the CsrA binding of glgC mRNA K18515 csrB; small regulatory RNA CsrB C ECO26_ncRNA61 csrC; CsrC sRNA sequesters CsrA, a carbon flux regulator; also affects biofilms and motility K18516 csrC; small regulatory RNA CsrC C ECO26_ncRNA12 dicF_3; Prophage ECO26_P05; DicF antisense sRNA, inhibits ftsZ K18517 dicF; small regulatory RNA DicF C ECO26_ncRNA15 dicF_4; Prophage ECO26_P08; DicF antisense sRNA, inhibits ftsZ K18517 dicF; small regulatory RNA DicF C ECO26_ncRNA21 dicF_8; Prophage ECO26_P10; DicF antisense sRNA, inhibits ftsZ K18517 dicF; small regulatory RNA DicF C ECO26_ncRNA22 dicF_6; Prophage ECO26_P11; DicF antisense sRNA, inhibits ftsZ K18517 dicF; small regulatory RNA DicF C ECO26_ncRNA09 dicF_2; Prophage ECO26_P04; DicF antisense sRNA, inhibits ftsZ K18517 dicF; small regulatory RNA DicF C ECO26_ncRNA08 dicF_1; Prophage ECO26_P03; DicF antisense sRNA, inhibits ftsZ K18517 dicF; small regulatory RNA DicF C ECO26_ncRNA24 rprA; Positive regulatory sRNA for RpoS translation; non-essential gene K18518 rprA; small regulatory RNA RprA C ECO26_ncRNA36 ryeE; Novel sRNA, function unknown K18520 cyaR; small regulatory RNA CyaR C ECO26_ncRNA46 gcvB; GcvB sRNA gene divergent from gcvA K18521 gcvB; small regulatory RNA GcvB C ECO26_ncRNA47 omrA; sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq K18522 omrA; small regulatory RNA OmrA C ECO26_ncRNA48 omrB; sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq K18523 omrB; small regulatory RNA OmrB C ECO26_ncRNA60 gadY; sRNA regulator of gadAB transcriptional activator GadX mRNA K18525 gadY; small regulatory RNA GadY C ECO26_ncRNA62 spf; Spot 42 sRNA; antisense regulator of galK translation K18527 spf; small regulatory RNA Spot 42 C ECO26_ncRNA66 oxyS; OxyS sRNA activates genes that detoxify oxidative damage K18528 oxyS; small regulatory RNA OxyS C ECO26_ncRNA16 isrA; Novel sRNA, function unknown K21091 mcaS; small regulatory RNA McaS ! #
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#Last updated: January 23, 2024